Wall clock time and date at job start Mon Mar 30 2020 07:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.29442 * 117.95730 * 2 1 4 4 C 1.50074 * 124.06613 * 179.30116 * 3 2 1 5 5 H 1.09008 * 109.23233 * 137.67605 * 4 3 2 6 6 C 1.53004 * 109.42586 * 257.36039 * 4 3 2 7 7 C 1.53023 * 110.09854 * 17.57695 * 4 3 2 8 8 C 1.53395 * 108.43634 * 310.37981 * 7 4 3 9 9 H 1.08994 * 109.63732 * 307.74560 * 8 7 4 10 10 C 1.53003 * 109.63943 * 187.11567 * 8 7 4 11 11 N 1.46903 * 109.46984 * 63.00660 * 10 8 7 12 12 C 1.46845 * 111.00028 * 52.04347 * 11 10 8 13 13 C 1.53040 * 109.52308 * 185.83823 * 12 11 10 14 14 C 1.53117 * 109.27748 * 300.82172 * 13 12 11 15 15 C 1.50700 * 109.52478 * 177.56027 * 14 13 12 16 16 H 1.07998 * 119.99985 * 240.32048 * 15 14 13 17 17 C 1.37878 * 120.00078 * 60.31084 * 15 14 13 18 18 N 1.31519 * 119.99847 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00206 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46983 * 60.00191 * 19 17 15 21 21 H 1.48496 * 109.47474 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47123 * 300.00604 * 19 17 15 23 23 C 1.53115 * 109.16226 * 57.65227 * 14 13 12 24 24 C 1.46844 * 110.99793 * 176.25499 * 11 10 8 25 25 C 1.50066 * 117.96225 * 180.26403 * 2 1 3 26 26 H 1.08997 * 109.46746 * 269.73589 * 1 2 3 27 27 H 1.08994 * 109.47043 * 29.73663 * 1 2 3 28 28 H 1.09006 * 109.46714 * 149.73848 * 1 2 3 29 29 H 1.07997 * 117.96617 * 359.52821 * 3 2 1 30 30 H 1.09000 * 109.47404 * 180.66599 * 6 4 3 31 31 H 1.08999 * 109.47283 * 300.66666 * 6 4 3 32 32 H 1.09003 * 109.46837 * 60.66784 * 6 4 3 33 33 H 1.08997 * 109.64672 * 190.69085 * 7 4 3 34 34 H 1.09005 * 109.81546 * 70.16315 * 7 4 3 35 35 H 1.08996 * 109.46831 * 183.00540 * 10 8 7 36 36 H 1.09000 * 109.47185 * 303.00875 * 10 8 7 37 37 H 1.09000 * 109.46212 * 305.85489 * 12 11 10 38 38 H 1.09000 * 109.46339 * 65.82387 * 12 11 10 39 39 H 1.08999 * 109.50355 * 180.87922 * 13 12 11 40 40 H 1.09001 * 109.53566 * 60.77826 * 13 12 11 41 41 H 1.09000 * 109.57399 * 297.71386 * 14 13 12 42 42 H 0.96996 * 120.00126 * 179.97438 * 18 17 15 43 43 H 1.09001 * 109.50863 * 182.40166 * 23 14 13 44 44 H 1.09004 * 109.53354 * 62.30886 * 23 14 13 45 45 H 1.09005 * 109.46362 * 294.17212 * 24 11 10 46 46 H 1.08997 * 109.46409 * 54.15190 * 24 11 10 47 47 H 1.08999 * 109.35845 * 317.31710 * 25 2 1 48 48 H 1.09002 * 109.36008 * 76.90193 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1139 1.1434 0.0000 4 6 3.6060 1.3031 0.0152 5 1 3.8896 2.0940 -0.6794 6 6 4.0632 1.6793 1.4260 7 6 4.2793 -0.0055 -0.4041 8 6 3.6706 -1.1491 0.4173 9 1 3.7173 -0.9033 1.4782 10 6 4.4434 -2.4423 0.1500 11 7 5.8326 -2.2845 0.6008 12 6 5.8846 -1.8072 1.9885 13 6 7.3365 -1.5162 2.3752 14 6 8.1658 -2.7944 2.2240 15 6 9.6083 -2.4999 2.5458 16 1 10.3712 -2.6555 1.7974 17 6 9.9541 -2.0318 3.7957 18 7 9.0251 -1.8427 4.7073 19 14 11.7420 -1.6660 4.1944 20 1 12.2528 -0.6245 3.2673 21 1 11.8476 -1.1790 5.5933 22 1 12.5469 -2.9043 4.0397 23 6 8.0556 -3.2974 0.7820 24 6 6.5829 -3.5367 0.4414 25 6 2.2107 -1.3255 -0.0061 26 1 -0.3633 -0.0047 1.0276 27 1 -0.3633 0.8923 -0.5097 28 1 -0.3633 -0.8877 -0.5179 29 1 1.5088 2.0379 -0.0079 30 1 5.1457 1.8071 1.4352 31 1 3.5848 2.6114 1.7266 32 1 3.7849 0.8873 2.1213 33 1 5.3502 0.0549 -0.2106 34 1 4.1083 -0.1855 -1.4655 35 1 3.9762 -3.2636 0.6933 36 1 4.4304 -2.6591 -0.9181 37 1 5.2943 -0.8956 2.0814 38 1 5.4786 -2.5717 2.6510 39 1 7.3764 -1.1768 3.4103 40 1 7.7393 -0.7418 1.7225 41 1 7.7890 -3.5570 2.9056 42 1 9.2684 -1.5137 5.5867 43 1 8.6093 -4.2305 0.6787 44 1 8.4695 -2.5516 0.1033 45 1 6.1737 -4.2931 1.1112 46 1 6.5000 -3.8811 -0.5893 47 1 1.7124 -2.0022 0.6880 48 1 2.1743 -1.7493 -1.0097 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576796021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:24 Heat of formation + Delta-G solvation = -15.082683 kcal Electronic energy + Delta-G solvation = -22774.071451 eV Core-core repulsion = 19827.465264 eV Total energy + Delta-G solvation = -2946.606187 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.64685 -37.79994 -34.36246 -33.34081 -32.34462 -30.46613 -29.73698 -26.92347 -26.52892 -26.20073 -24.23239 -22.46839 -21.64848 -21.20906 -19.73221 -18.48949 -17.29094 -16.32411 -15.52409 -15.25417 -14.76726 -14.44895 -14.10704 -14.01305 -13.74202 -13.55616 -13.20881 -12.75866 -12.58458 -12.52995 -12.41101 -12.29560 -11.89853 -11.80832 -11.68657 -11.30992 -11.16888 -11.10542 -10.88563 -10.68033 -10.49747 -10.22407 -10.15411 -10.04337 -9.96169 -9.85602 -9.34161 -8.89660 -8.73897 -8.62064 -8.24261 -7.63542 -5.92852 -3.98019 2.25176 3.35394 3.39806 3.42775 4.41993 4.48941 4.65479 4.84660 4.92687 5.17292 5.31459 5.33856 5.37166 5.40515 5.45686 5.56163 5.60853 5.70572 5.74476 5.80025 5.80847 5.84794 5.87390 5.95883 6.05271 6.07794 6.14932 6.21004 6.25002 6.28692 6.38082 6.42801 6.57818 6.60374 6.69714 6.72520 6.77822 6.92292 7.03980 7.14374 7.23826 7.51070 7.69216 7.78781 7.90000 8.11069 8.22036 8.53553 9.05478 9.65998 11.13190 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.026871 B = 0.004108 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.751697 B = 6814.996110 C = 7382.296984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.127 4.127 3 C -0.150 4.150 4 C -0.062 4.062 5 H 0.071 0.929 6 C -0.142 4.142 7 C -0.102 4.102 8 C -0.089 4.089 9 H 0.080 0.920 10 C 0.060 3.940 11 N -0.531 5.531 12 C 0.052 3.948 13 C -0.102 4.102 14 C 0.048 3.952 15 C -0.510 4.510 16 H 0.053 0.947 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.889 3.111 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.279 1.279 23 C -0.106 4.106 24 C 0.061 3.939 25 C -0.076 4.076 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.096 0.904 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.023 0.977 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.018 0.982 39 H 0.090 0.910 40 H 0.042 0.958 41 H 0.019 0.981 42 H 0.259 0.741 43 H 0.047 0.953 44 H 0.056 0.944 45 H 0.021 0.979 46 H 0.055 0.945 47 H 0.066 0.934 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.200 3.576 -9.076 18.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.127 4.127 3 C -0.169 4.169 4 C -0.080 4.080 5 H 0.090 0.910 6 C -0.199 4.199 7 C -0.140 4.140 8 C -0.107 4.107 9 H 0.098 0.902 10 C -0.068 4.068 11 N -0.256 5.256 12 C -0.075 4.075 13 C -0.140 4.140 14 C 0.030 3.970 15 C -0.549 4.549 16 H 0.071 0.929 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.204 1.204 23 C -0.143 4.143 24 C -0.067 4.067 25 C -0.114 4.114 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.115 0.885 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.042 0.958 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.036 0.964 39 H 0.108 0.892 40 H 0.061 0.939 41 H 0.037 0.963 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.040 0.960 46 H 0.074 0.926 47 H 0.084 0.916 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.997 3.985 -9.174 18.027 hybrid contribution 0.427 -0.402 0.814 1.003 sum -14.570 3.583 -8.361 17.176 Atomic orbital electron populations 1.20927 0.93008 1.01952 1.01750 1.20846 0.95250 0.95132 1.01436 1.21929 0.96141 0.96770 1.02013 1.20035 0.91992 0.98373 0.97597 0.91041 1.21817 1.01436 1.00837 0.95787 1.21612 1.01166 0.92541 0.98658 1.21360 0.93003 0.95336 1.01041 0.90184 1.22091 0.89255 0.95601 0.99857 1.62020 1.10521 1.29873 1.23157 1.22381 1.00586 0.98123 0.86452 1.21634 0.90182 0.99838 1.02395 1.18671 0.95127 0.93345 0.89893 1.21187 0.92724 1.43394 0.97548 0.92881 1.24958 0.96983 0.95632 0.96394 1.69872 1.32165 1.46468 1.04636 0.86712 0.85720 0.78645 0.77220 1.20323 1.21400 1.20426 1.21666 0.92209 0.99956 1.00507 1.22094 0.96205 0.89576 0.98831 1.20410 0.95032 0.94488 1.01464 0.91861 0.92304 0.92208 0.88548 0.91923 0.93270 0.92472 0.89695 0.92554 0.95843 0.91555 0.91887 0.96399 0.89163 0.93938 0.96299 0.93114 0.93384 0.92542 0.96027 0.92640 0.91556 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.87 36.01 0.36 -0.70 16 2 C -0.13 -1.38 5.84 -100.94 -0.59 -1.96 16 3 C -0.15 -1.68 8.61 -35.90 -0.31 -1.99 16 4 C -0.06 -0.73 3.12 -92.06 -0.29 -1.02 16 5 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 6 C -0.14 -1.75 8.98 37.16 0.33 -1.42 16 7 C -0.10 -1.34 4.65 -26.51 -0.12 -1.46 16 8 C -0.09 -1.16 1.69 -90.40 -0.15 -1.32 16 9 H 0.08 1.16 4.35 -51.93 -0.23 0.94 16 10 C 0.06 0.87 4.53 -3.82 -0.02 0.85 16 11 N -0.53 -9.35 4.04 -234.67 -0.95 -10.30 16 12 C 0.05 1.01 5.05 -3.83 -0.02 0.99 16 13 C -0.10 -2.41 5.12 -26.65 -0.14 -2.55 16 14 C 0.05 1.21 2.16 -91.65 -0.20 1.01 16 15 C -0.51 -14.14 8.56 -34.44 -0.29 -14.44 16 16 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.70 5.31 -17.82 -0.09 1.60 16 18 N -0.89 -25.56 11.37 55.43 0.63 -24.93 16 19 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 23 C -0.11 -2.24 5.32 -26.65 -0.14 -2.39 16 24 C 0.06 1.11 5.46 -3.84 -0.02 1.09 16 25 C -0.08 -0.86 5.09 -28.18 -0.14 -1.00 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.47 7.88 -51.93 -0.41 0.06 16 28 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 29 H 0.10 0.97 7.80 -52.49 -0.41 0.56 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.75 6.34 -51.93 -0.33 0.43 16 33 H 0.08 1.29 7.50 -51.93 -0.39 0.90 16 34 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 1.14 5.55 -51.93 -0.29 0.85 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 2.38 6.17 -51.93 -0.32 2.06 16 40 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.90 8.12 -51.93 -0.42 0.48 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 LS Contribution 355.57 15.07 5.36 5.36 Total: -1.00 -27.73 355.57 -10.91 -38.65 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -9.09 Total: -0.53 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: -1.84 Total: -24.68 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: -0.32 Total: -35.23 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.73 -10.91 -38.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576796021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.565 kcal (2) G-P(sol) polarization free energy of solvation -27.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds