Wall clock time and date at job start Mon Mar 30 2020 07:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.29442 * 117.95730 * 2 1 4 4 C 1.50074 * 124.06613 * 179.30116 * 3 2 1 5 5 H 1.09008 * 109.23233 * 137.67605 * 4 3 2 6 6 C 1.53004 * 109.42586 * 257.36039 * 4 3 2 7 7 C 1.53023 * 110.09854 * 17.57695 * 4 3 2 8 8 C 1.53395 * 108.43634 * 310.37981 * 7 4 3 9 9 H 1.08994 * 109.63732 * 307.74560 * 8 7 4 10 10 C 1.53003 * 109.63943 * 187.11567 * 8 7 4 11 11 N 1.46903 * 109.46984 * 63.00660 * 10 8 7 12 12 C 1.46845 * 111.00028 * 52.04347 * 11 10 8 13 13 C 1.53040 * 109.52308 * 185.83823 * 12 11 10 14 14 C 1.53117 * 109.27748 * 300.82172 * 13 12 11 15 15 C 1.50700 * 109.52478 * 177.56027 * 14 13 12 16 16 H 1.07998 * 119.99985 * 240.32048 * 15 14 13 17 17 C 1.37878 * 120.00078 * 60.31084 * 15 14 13 18 18 N 1.31519 * 119.99847 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00206 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46983 * 60.00191 * 19 17 15 21 21 H 1.48496 * 109.47474 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47123 * 300.00604 * 19 17 15 23 23 C 1.53115 * 109.16226 * 57.65227 * 14 13 12 24 24 C 1.46844 * 110.99793 * 176.25499 * 11 10 8 25 25 C 1.50066 * 117.96225 * 180.26403 * 2 1 3 26 26 H 1.08997 * 109.46746 * 269.73589 * 1 2 3 27 27 H 1.08994 * 109.47043 * 29.73663 * 1 2 3 28 28 H 1.09006 * 109.46714 * 149.73848 * 1 2 3 29 29 H 1.07997 * 117.96617 * 359.52821 * 3 2 1 30 30 H 1.09000 * 109.47404 * 180.66599 * 6 4 3 31 31 H 1.08999 * 109.47283 * 300.66666 * 6 4 3 32 32 H 1.09003 * 109.46837 * 60.66784 * 6 4 3 33 33 H 1.08997 * 109.64672 * 190.69085 * 7 4 3 34 34 H 1.09005 * 109.81546 * 70.16315 * 7 4 3 35 35 H 1.08996 * 109.46831 * 183.00540 * 10 8 7 36 36 H 1.09000 * 109.47185 * 303.00875 * 10 8 7 37 37 H 1.09000 * 109.46212 * 305.85489 * 12 11 10 38 38 H 1.09000 * 109.46339 * 65.82387 * 12 11 10 39 39 H 1.08999 * 109.50355 * 180.87922 * 13 12 11 40 40 H 1.09001 * 109.53566 * 60.77826 * 13 12 11 41 41 H 1.09000 * 109.57399 * 297.71386 * 14 13 12 42 42 H 0.96996 * 120.00126 * 179.97438 * 18 17 15 43 43 H 1.09001 * 109.50863 * 182.40166 * 23 14 13 44 44 H 1.09004 * 109.53354 * 62.30886 * 23 14 13 45 45 H 1.09005 * 109.46362 * 294.17212 * 24 11 10 46 46 H 1.08997 * 109.46409 * 54.15190 * 24 11 10 47 47 H 1.08999 * 109.35845 * 317.31710 * 25 2 1 48 48 H 1.09002 * 109.36008 * 76.90193 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1139 1.1434 0.0000 4 6 3.6060 1.3031 0.0152 5 1 3.8896 2.0940 -0.6794 6 6 4.0632 1.6793 1.4260 7 6 4.2793 -0.0055 -0.4041 8 6 3.6706 -1.1491 0.4173 9 1 3.7173 -0.9033 1.4782 10 6 4.4434 -2.4423 0.1500 11 7 5.8326 -2.2845 0.6008 12 6 5.8846 -1.8072 1.9885 13 6 7.3365 -1.5162 2.3752 14 6 8.1658 -2.7944 2.2240 15 6 9.6083 -2.4999 2.5458 16 1 10.3712 -2.6555 1.7974 17 6 9.9541 -2.0318 3.7957 18 7 9.0251 -1.8427 4.7073 19 14 11.7420 -1.6660 4.1944 20 1 12.2528 -0.6245 3.2673 21 1 11.8476 -1.1790 5.5933 22 1 12.5469 -2.9043 4.0397 23 6 8.0556 -3.2974 0.7820 24 6 6.5829 -3.5367 0.4414 25 6 2.2107 -1.3255 -0.0061 26 1 -0.3633 -0.0047 1.0276 27 1 -0.3633 0.8923 -0.5097 28 1 -0.3633 -0.8877 -0.5179 29 1 1.5088 2.0379 -0.0079 30 1 5.1457 1.8071 1.4352 31 1 3.5848 2.6114 1.7266 32 1 3.7849 0.8873 2.1213 33 1 5.3502 0.0549 -0.2106 34 1 4.1083 -0.1855 -1.4655 35 1 3.9762 -3.2636 0.6933 36 1 4.4304 -2.6591 -0.9181 37 1 5.2943 -0.8956 2.0814 38 1 5.4786 -2.5717 2.6510 39 1 7.3764 -1.1768 3.4103 40 1 7.7393 -0.7418 1.7225 41 1 7.7890 -3.5570 2.9056 42 1 9.2684 -1.5137 5.5867 43 1 8.6093 -4.2305 0.6787 44 1 8.4695 -2.5516 0.1033 45 1 6.1737 -4.2931 1.1112 46 1 6.5000 -3.8811 -0.5893 47 1 1.7124 -2.0022 0.6880 48 1 2.1743 -1.7493 -1.0097 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576796021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:24 Heat of formation + Delta-G solvation = -27.680318 kcal Electronic energy + Delta-G solvation = -22774.617726 eV Core-core repulsion = 19827.465264 eV Total energy + Delta-G solvation = -2947.152461 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.76549 -39.22826 -35.98908 -34.30949 -33.91802 -32.03021 -31.43775 -28.15933 -27.67065 -27.28569 -25.79236 -24.03171 -23.28637 -22.28114 -20.96567 -20.21690 -18.46830 -18.20208 -16.84591 -16.49176 -16.30163 -15.80592 -15.53293 -15.10046 -14.89430 -14.77405 -14.51303 -14.29223 -14.17866 -13.99163 -13.47681 -13.27699 -13.13521 -13.01442 -12.95147 -12.82531 -12.54478 -12.45069 -12.31452 -12.23967 -12.08808 -11.96403 -11.83238 -11.41667 -11.23776 -11.01878 -10.94925 -10.76853 -10.54546 -10.34269 -9.56660 -9.09334 -8.06641 -6.20152 1.41467 1.42477 1.42832 1.50383 2.44461 3.07955 3.20085 3.73256 3.86079 3.89868 4.23046 4.28309 4.30236 4.36164 4.41423 4.43505 4.48473 4.55142 4.62964 4.68713 4.72701 4.76354 4.79600 4.85404 4.94204 4.94931 4.96424 5.01268 5.05601 5.07502 5.09365 5.13147 5.24097 5.26164 5.28361 5.36230 5.39286 5.56750 5.58398 5.60344 5.65042 5.88871 6.02678 6.06138 6.20725 6.34571 6.40614 6.42686 6.91398 7.47402 8.97612 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.026871 B = 0.004108 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.751697 B = 6814.996110 C = 7382.296984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.129 4.129 3 C -0.161 4.161 4 C -0.060 4.060 5 H 0.079 0.921 6 C -0.140 4.140 7 C -0.098 4.098 8 C -0.085 4.085 9 H 0.062 0.938 10 C 0.062 3.938 11 N -0.534 5.534 12 C 0.068 3.932 13 C -0.091 4.091 14 C 0.044 3.956 15 C -0.535 4.535 16 H 0.050 0.950 17 C 0.013 3.987 18 N -0.917 5.917 19 Si 0.952 3.048 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.272 1.272 23 C -0.099 4.099 24 C 0.066 3.934 25 C -0.074 4.074 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.109 0.891 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.044 0.956 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.027 0.973 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.005 0.995 39 H 0.057 0.943 40 H 0.029 0.971 41 H -0.015 1.015 42 H 0.260 0.740 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.017 0.983 46 H 0.087 0.913 47 H 0.072 0.928 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.461 3.697 -10.615 19.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.129 4.129 3 C -0.179 4.179 4 C -0.078 4.078 5 H 0.097 0.903 6 C -0.197 4.197 7 C -0.136 4.136 8 C -0.103 4.103 9 H 0.080 0.920 10 C -0.066 4.066 11 N -0.259 5.259 12 C -0.060 4.060 13 C -0.130 4.130 14 C 0.026 3.974 15 C -0.573 4.573 16 H 0.068 0.932 17 C -0.186 4.186 18 N -0.557 5.557 19 Si 0.778 3.222 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.197 1.197 23 C -0.136 4.136 24 C -0.062 4.062 25 C -0.111 4.111 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.127 0.873 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.045 0.955 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.023 0.977 39 H 0.076 0.924 40 H 0.048 0.952 41 H 0.003 0.997 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.036 0.964 46 H 0.106 0.894 47 H 0.091 0.909 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.266 4.100 -10.728 19.912 hybrid contribution 0.824 -0.454 1.297 1.603 sum -15.442 3.646 -9.431 18.458 Atomic orbital electron populations 1.20934 0.91351 1.02917 1.02249 1.21045 0.96520 0.94699 1.00664 1.21967 0.95481 0.97560 1.02856 1.20002 0.92803 0.97898 0.97090 0.90323 1.21787 1.00577 1.01094 0.96222 1.21535 0.99651 0.93328 0.99056 1.21285 0.94414 0.94611 1.00014 0.91956 1.22188 0.87137 0.96464 1.00774 1.61973 1.12876 1.29709 1.21313 1.22091 0.97672 0.98533 0.87665 1.21377 0.92794 0.98649 1.00147 1.18651 0.94086 0.93015 0.91664 1.21571 0.94064 1.43734 0.97897 0.93157 1.25735 1.01120 0.95422 0.96293 1.70018 1.34010 1.46839 1.04841 0.85705 0.80763 0.78654 0.77095 1.19684 1.20934 1.19742 1.21529 0.94834 0.99682 0.97597 1.22036 0.93969 0.89689 1.00506 1.20391 0.93369 0.95105 1.02233 0.91528 0.91397 0.91267 0.87324 0.93403 0.91948 0.93677 0.92252 0.91805 0.95483 0.89660 0.90458 0.97683 0.92408 0.95203 0.99715 0.93143 0.93035 0.93014 0.96437 0.89446 0.90949 0.89887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.72 9.87 71.24 0.70 -1.02 16 2 C -0.13 -2.47 5.84 -15.10 -0.09 -2.56 16 3 C -0.16 -3.23 8.61 27.04 0.23 -3.00 16 4 C -0.06 -1.34 3.12 -11.73 -0.04 -1.38 16 5 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 6 C -0.14 -3.42 8.98 71.98 0.65 -2.77 16 7 C -0.10 -2.44 4.65 30.73 0.14 -2.30 16 8 C -0.08 -2.09 1.69 -10.65 -0.02 -2.11 16 9 H 0.06 1.77 4.35 -2.39 -0.01 1.76 16 10 C 0.06 1.66 4.53 86.30 0.39 2.05 16 11 N -0.53 -18.36 4.04 -896.36 -3.62 -21.98 16 12 C 0.07 2.71 5.05 86.33 0.44 3.15 16 13 C -0.09 -4.48 5.12 30.65 0.16 -4.33 16 14 C 0.04 2.30 2.16 -11.46 -0.02 2.28 16 15 C -0.53 -30.40 8.56 25.60 0.22 -30.18 16 16 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 17 C 0.01 0.72 5.31 84.65 0.45 1.17 16 18 N -0.92 -54.14 11.37 21.45 0.24 -53.89 16 19 Si 0.95 44.54 29.54 68.60 2.03 46.56 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 23 C -0.10 -4.20 5.32 30.64 0.16 -4.04 16 24 C 0.07 2.32 5.46 86.33 0.47 2.79 16 25 C -0.07 -1.46 5.09 29.66 0.15 -1.31 16 26 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.07 0.88 7.88 -2.39 -0.02 0.86 16 28 H 0.07 0.88 8.08 -2.38 -0.02 0.87 16 29 H 0.11 1.92 7.80 -2.91 -0.02 1.89 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.04 1.19 6.34 -2.39 -0.02 1.18 16 33 H 0.06 1.79 7.50 -2.39 -0.02 1.77 16 34 H 0.06 1.48 8.13 -2.38 -0.02 1.47 16 35 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.08 2.85 5.55 -2.39 -0.01 2.84 16 38 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 39 H 0.06 3.20 6.17 -2.39 -0.01 3.19 16 40 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 41 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 42 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 43 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.05 2.23 8.14 -2.38 -0.02 2.22 16 45 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 46 H 0.09 2.57 8.12 -2.39 -0.02 2.55 16 47 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 48 H 0.08 1.47 8.10 -2.39 -0.02 1.45 16 Total: -1.00 -60.70 355.57 3.53 -57.17 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.88 Total: 15.68 kcal Atomic # 6 Polarization: -47.54 SS G_CDS: 4.00 Total: -43.55 kcal Atomic # 7 Polarization: -72.50 SS G_CDS: -3.38 Total: -75.88 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -60.70 3.53 -57.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576796021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.492 kcal (2) G-P(sol) polarization free energy of solvation -60.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds