Wall clock time and date at job start Mon Mar 30 2020 07:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.29445 * 117.96174 * 2 1 4 4 C 1.50061 * 124.07488 * 180.51500 * 3 2 1 5 5 H 1.08998 * 109.36063 * 103.05185 * 4 3 2 6 6 C 1.52999 * 109.35967 * 222.77754 * 4 3 2 7 7 C 1.53042 * 110.14098 * 342.82949 * 4 3 2 8 8 C 1.53397 * 108.42410 * 49.46572 * 7 4 3 9 9 H 1.09004 * 109.81293 * 52.34011 * 8 7 4 10 10 C 1.52994 * 109.64081 * 172.86726 * 8 7 4 11 11 N 1.46905 * 109.47345 * 297.05964 * 10 8 7 12 12 C 1.46846 * 111.00051 * 183.78539 * 11 10 8 13 13 C 1.53041 * 109.52124 * 185.83966 * 12 11 10 14 14 C 1.53118 * 109.27862 * 300.82077 * 13 12 11 15 15 C 1.50704 * 109.52422 * 177.55734 * 14 13 12 16 16 H 1.08000 * 119.99383 * 0.12910 * 15 14 13 17 17 C 1.37870 * 120.00158 * 180.12453 * 15 14 13 18 18 N 1.31513 * 120.00074 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 120.00018 * 0.02562 * 17 15 14 20 20 H 1.48492 * 109.46999 * 90.00045 * 19 17 15 21 21 H 1.48506 * 109.47057 * 329.99862 * 19 17 15 22 22 H 1.48503 * 109.47035 * 209.99916 * 19 17 15 23 23 C 1.53118 * 109.21207 * 57.62188 * 14 13 12 24 24 C 1.46852 * 110.99736 * 307.99587 * 11 10 8 25 25 C 1.50069 * 117.96256 * 180.02562 * 2 1 3 26 26 H 1.08999 * 109.47003 * 269.98085 * 1 2 3 27 27 H 1.09003 * 109.47001 * 29.97949 * 1 2 3 28 28 H 1.08998 * 109.47232 * 149.98247 * 1 2 3 29 29 H 1.07999 * 117.95760 * 0.49045 * 3 2 1 30 30 H 1.09003 * 109.47047 * 59.99788 * 6 4 3 31 31 H 1.08994 * 109.47464 * 180.02562 * 6 4 3 32 32 H 1.09008 * 109.47094 * 299.99874 * 6 4 3 33 33 H 1.09001 * 109.65689 * 289.78064 * 7 4 3 34 34 H 1.08994 * 109.63763 * 169.14050 * 7 4 3 35 35 H 1.09007 * 109.47162 * 177.06242 * 10 8 7 36 36 H 1.08996 * 109.47398 * 57.05800 * 10 8 7 37 37 H 1.08994 * 109.46298 * 65.82484 * 12 11 10 38 38 H 1.09002 * 109.46254 * 305.85087 * 12 11 10 39 39 H 1.08993 * 109.50635 * 180.87615 * 13 12 11 40 40 H 1.08998 * 109.53412 * 60.77852 * 13 12 11 41 41 H 1.08998 * 109.52322 * 297.68673 * 14 13 12 42 42 H 0.97008 * 119.99974 * 179.97438 * 18 17 15 43 43 H 1.09003 * 109.50320 * 62.32386 * 23 14 13 44 44 H 1.09002 * 109.50206 * 182.43730 * 23 14 13 45 45 H 1.08991 * 109.46138 * 294.17124 * 24 11 10 46 46 H 1.08998 * 109.46485 * 54.15279 * 24 11 10 47 47 H 1.08997 * 109.35465 * 42.63796 * 25 2 1 48 48 H 1.08997 * 109.24490 * 282.98325 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1140 1.1433 0.0000 4 6 3.6060 1.3032 -0.0112 5 1 3.9326 1.5768 -1.0144 6 6 4.0053 2.4065 0.9707 7 6 4.2795 -0.0075 0.4022 8 6 3.6702 -1.1472 -0.4241 9 1 3.7164 -0.9002 -1.4848 10 6 4.4432 -2.4416 -0.1634 11 7 5.8326 -2.2813 -0.6129 12 6 6.5828 -3.5345 -0.4608 13 6 8.0556 -3.2931 -0.7995 14 6 8.1661 -2.7818 -2.2386 15 6 9.6086 -2.4853 -2.5584 16 1 10.3716 -2.6473 -1.8113 17 6 9.9544 -2.0075 -3.8046 18 7 11.2133 -1.7492 -4.0838 19 14 8.6346 -1.7269 -5.0965 20 1 8.1170 -0.3398 -4.9820 21 1 7.5232 -2.6890 -4.8858 22 1 9.2146 -1.9288 -6.4486 23 6 7.3365 -1.5031 -2.3840 24 6 5.8848 -1.7959 -1.9979 25 6 2.2107 -1.3255 -0.0006 26 1 -0.3633 -0.0003 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5141 29 1 1.5089 2.0378 0.0082 30 1 3.6752 2.1370 1.9740 31 1 5.0888 2.5245 0.9637 32 1 3.5362 3.3446 0.6736 33 1 4.1060 -0.1904 1.4626 34 1 5.3503 0.0539 0.2082 35 1 3.9763 -3.2603 -0.7111 36 1 4.4300 -2.6640 0.9036 37 1 6.1736 -4.2868 -1.1349 38 1 6.4995 -3.8850 0.5680 39 1 8.6093 -4.2268 -0.7016 40 1 8.4697 -2.5511 -0.1169 41 1 7.7893 -3.5404 -2.9246 42 1 11.4566 -1.4134 -4.9607 43 1 7.7385 -0.7318 -1.7270 44 1 7.3768 -1.1587 -3.4175 45 1 5.4790 -2.5564 -2.6648 46 1 5.2948 -0.8836 -2.0856 47 1 1.7119 -1.9990 -0.6975 48 1 2.1750 -1.7517 1.0020 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576796022.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:26 Heat of formation + Delta-G solvation = -8.783384 kcal Electronic energy + Delta-G solvation = -22675.940062 eV Core-core repulsion = 19729.607033 eV Total energy + Delta-G solvation = -2946.333029 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.68580 -38.06896 -34.56553 -33.52199 -32.47280 -30.97578 -30.13864 -27.14220 -26.62899 -26.41718 -24.21030 -22.65095 -21.62747 -21.24896 -19.83013 -18.75541 -17.78109 -16.65143 -15.74919 -15.56922 -14.91746 -14.56559 -14.35707 -13.97192 -13.82050 -13.73090 -13.42183 -12.94761 -12.90310 -12.56736 -12.50302 -12.41323 -12.12056 -11.99554 -11.82605 -11.62895 -11.49763 -11.40282 -11.12778 -10.82909 -10.51643 -10.49991 -10.26433 -10.14410 -9.96365 -9.81026 -9.54426 -9.01629 -8.86026 -8.80649 -8.47302 -7.85848 -6.02546 -4.00452 2.16468 3.29475 3.39625 3.41903 4.22041 4.44929 4.54260 4.71810 4.76985 5.07083 5.16963 5.23833 5.24743 5.29213 5.39076 5.41300 5.44359 5.55647 5.63310 5.66828 5.69154 5.71356 5.75963 5.77829 5.82594 5.89504 5.94884 6.01990 6.04199 6.07138 6.17362 6.20741 6.23697 6.39675 6.46819 6.47849 6.54705 6.66735 6.79365 6.89687 6.93107 6.98930 7.27764 7.49562 7.59639 7.70129 7.84188 8.58849 9.02355 9.60860 11.11083 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.022559 B = 0.004381 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.899878 B = 6389.989341 C = 6692.428914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.129 4.129 3 C -0.150 4.150 4 C -0.065 4.065 5 H 0.077 0.923 6 C -0.141 4.141 7 C -0.101 4.101 8 C -0.090 4.090 9 H 0.076 0.924 10 C 0.061 3.939 11 N -0.530 5.530 12 C 0.057 3.943 13 C -0.095 4.095 14 C 0.013 3.987 15 C -0.509 4.509 16 H 0.073 0.927 17 C 0.068 3.932 18 N -0.904 5.904 19 Si 0.887 3.113 20 H -0.279 1.279 21 H -0.268 1.268 22 H -0.299 1.299 23 C -0.115 4.115 24 C 0.051 3.949 25 C -0.076 4.076 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.026 0.974 36 H 0.070 0.930 37 H 0.024 0.976 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.020 0.980 42 H 0.262 0.738 43 H 0.068 0.932 44 H 0.046 0.954 45 H 0.021 0.979 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.486 3.343 9.264 22.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.129 4.129 3 C -0.168 4.168 4 C -0.083 4.083 5 H 0.095 0.905 6 C -0.198 4.198 7 C -0.139 4.139 8 C -0.108 4.108 9 H 0.094 0.906 10 C -0.067 4.067 11 N -0.254 5.254 12 C -0.070 4.070 13 C -0.133 4.133 14 C -0.006 4.006 15 C -0.547 4.547 16 H 0.091 0.909 17 C -0.133 4.133 18 N -0.543 5.543 19 Si 0.718 3.282 20 H -0.206 1.206 21 H -0.193 1.193 22 H -0.227 1.227 23 C -0.153 4.153 24 C -0.077 4.077 25 C -0.113 4.113 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.116 0.884 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.044 0.956 36 H 0.089 0.911 37 H 0.042 0.958 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.038 0.962 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.064 0.936 45 H 0.040 0.960 46 H 0.086 0.914 47 H 0.085 0.915 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.135 3.749 9.428 22.547 hybrid contribution -1.134 -0.331 -1.385 1.821 sum -21.269 3.418 8.043 22.995 Atomic orbital electron populations 1.20934 0.92904 1.02101 1.01703 1.20852 0.95335 0.95079 1.01612 1.21972 0.96083 0.96826 1.01895 1.20067 0.92205 0.96243 0.99753 0.90526 1.21766 1.01500 0.97584 0.98950 1.21642 1.01035 0.92198 0.99014 1.21344 0.93285 0.95474 1.00713 0.90621 1.22102 0.88736 0.95673 1.00203 1.61953 1.11034 1.30014 1.22437 1.22166 0.96054 0.89366 0.99457 1.21479 0.92293 1.00656 0.98891 1.19178 0.96033 0.92567 0.92807 1.21078 0.91194 1.43242 0.99154 0.90900 1.25019 0.95059 0.95017 0.98188 1.69906 1.16494 1.45717 1.22142 0.86853 0.82151 0.78724 0.80506 1.20583 1.19303 1.22660 1.22003 0.92543 1.01345 0.99401 1.22279 0.99187 0.98682 0.87545 1.20408 0.94812 0.94530 1.01559 0.91918 0.92231 0.92154 0.88405 0.92857 0.92225 0.93068 0.92236 0.89741 0.95587 0.91112 0.95786 0.91971 0.92516 0.91821 0.96201 0.92788 0.91334 0.93581 0.96027 0.91398 0.91513 0.91033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 9.87 36.01 0.36 -0.62 16 2 C -0.13 -1.30 5.84 -100.94 -0.59 -1.89 16 3 C -0.15 -1.57 8.61 -35.90 -0.31 -1.87 16 4 C -0.06 -0.72 2.98 -92.06 -0.27 -0.99 16 5 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 6 C -0.14 -1.40 9.13 37.16 0.34 -1.06 16 7 C -0.10 -1.23 4.51 -26.50 -0.12 -1.34 16 8 C -0.09 -1.08 1.74 -90.41 -0.16 -1.23 16 9 H 0.08 1.01 6.05 -51.93 -0.31 0.69 16 10 C 0.06 0.80 4.53 -3.82 -0.02 0.78 16 11 N -0.53 -8.59 4.04 -234.67 -0.95 -9.54 16 12 C 0.06 0.96 5.46 -3.83 -0.02 0.94 16 13 C -0.10 -1.92 5.32 -26.65 -0.14 -2.06 16 14 C 0.01 0.31 1.75 -91.65 -0.16 0.15 16 15 C -0.51 -14.40 9.15 -34.44 -0.31 -14.72 16 16 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 17 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 18 N -0.90 -28.00 13.96 55.43 0.77 -27.22 16 19 Si 0.89 22.31 24.36 -169.99 -4.14 18.17 16 20 H -0.28 -6.81 6.89 56.52 0.39 -6.42 16 21 H -0.27 -6.49 6.53 56.52 0.37 -6.12 16 22 H -0.30 -7.55 7.11 56.52 0.40 -7.14 16 23 C -0.12 -2.51 4.83 -26.65 -0.13 -2.64 16 24 C 0.05 0.91 5.04 -3.83 -0.02 0.89 16 25 C -0.08 -0.78 5.11 -28.18 -0.14 -0.92 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.46 7.90 -51.93 -0.41 0.05 16 28 H 0.06 0.46 8.03 -51.93 -0.42 0.04 16 29 H 0.10 0.93 7.81 -52.49 -0.41 0.52 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.46 8.14 -51.92 -0.42 0.03 16 33 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 34 H 0.08 1.19 7.53 -51.93 -0.39 0.80 16 35 H 0.03 0.34 8.14 -51.92 -0.42 -0.08 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.92 8.12 -51.93 -0.42 0.49 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 41 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 42 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 43 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 44 H 0.05 1.06 3.36 -51.93 -0.17 0.89 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 1.11 5.76 -51.93 -0.30 0.81 16 47 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 48 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 352.23 15.07 5.31 5.31 Total: -1.00 -29.58 352.23 -9.95 -39.53 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -9.14 Total: -1.54 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: -1.80 Total: -24.71 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -0.17 Total: -36.76 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.14 Total: 18.17 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.58 -9.95 -39.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576796022.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.746 kcal (2) G-P(sol) polarization free energy of solvation -29.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds