Wall clock time and date at job start Mon Mar 30 2020 07:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.29446 * 117.95913 * 2 1 4 4 C 1.50063 * 124.07698 * 180.42173 * 3 2 1 5 5 H 1.08999 * 109.35968 * 222.68804 * 4 3 2 6 6 C 1.52997 * 109.35762 * 103.10026 * 4 3 2 7 7 C 1.52954 * 110.30266 * 343.05514 * 4 3 2 8 8 C 1.53392 * 108.48023 * 49.07615 * 7 4 3 9 9 H 1.08999 * 109.64458 * 52.68049 * 8 7 4 10 10 C 1.53000 * 109.64080 * 173.10235 * 8 7 4 11 11 N 1.46905 * 109.47031 * 181.19926 * 10 8 7 12 12 C 1.46842 * 110.99923 * 52.01094 * 11 10 8 13 13 C 1.53047 * 109.52106 * 185.84126 * 12 11 10 14 14 C 1.53121 * 109.27521 * 300.82250 * 13 12 11 15 15 C 1.50703 * 109.52042 * 177.56112 * 14 13 12 16 16 H 1.08000 * 119.99946 * 240.31517 * 15 14 13 17 17 C 1.37875 * 120.00066 * 60.31579 * 15 14 13 18 18 N 1.31516 * 119.99799 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00010 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47043 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.46968 * 119.99925 * 19 17 15 22 22 H 1.48503 * 109.46968 * 239.99775 * 19 17 15 23 23 C 1.53121 * 109.16151 * 57.65481 * 14 13 12 24 24 C 1.46845 * 111.00030 * 176.22615 * 11 10 8 25 25 C 1.50068 * 117.96738 * 179.97438 * 2 1 3 26 26 H 1.08998 * 109.46929 * 270.01455 * 1 2 3 27 27 H 1.08993 * 109.47595 * 30.01905 * 1 2 3 28 28 H 1.09006 * 109.46678 * 150.02194 * 1 2 3 29 29 H 1.08005 * 117.96307 * 0.45043 * 3 2 1 30 30 H 1.08999 * 109.47135 * 60.00299 * 6 4 3 31 31 H 1.09006 * 109.47425 * 180.02562 * 6 4 3 32 32 H 1.09003 * 109.47389 * 299.99986 * 6 4 3 33 33 H 1.08994 * 109.43881 * 289.48452 * 7 4 3 34 34 H 1.08999 * 109.79964 * 168.87968 * 7 4 3 35 35 H 1.09003 * 109.47294 * 301.19803 * 10 8 7 36 36 H 1.09000 * 109.46965 * 61.19781 * 10 8 7 37 37 H 1.09002 * 109.46376 * 305.85205 * 12 11 10 38 38 H 1.08995 * 109.46164 * 65.82676 * 12 11 10 39 39 H 1.08996 * 109.50292 * 180.88106 * 13 12 11 40 40 H 1.08999 * 109.50046 * 60.76290 * 13 12 11 41 41 H 1.09003 * 109.51859 * 297.74749 * 14 13 12 42 42 H 0.97003 * 120.00011 * 179.97438 * 18 17 15 43 43 H 1.09001 * 109.49746 * 182.40305 * 23 14 13 44 44 H 1.09000 * 109.53453 * 62.30749 * 23 14 13 45 45 H 1.09005 * 109.45859 * 294.17850 * 24 11 10 46 46 H 1.09000 * 109.46654 * 54.14822 * 24 11 10 47 47 H 1.08994 * 109.35410 * 42.68117 * 25 2 1 48 48 H 1.09001 * 109.24468 * 283.03126 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1139 1.1434 0.0000 4 6 3.6059 1.3033 -0.0091 5 1 3.8892 2.0910 0.6890 6 6 4.0662 1.6875 -1.4168 7 6 4.2826 -0.0060 0.4000 8 6 3.6706 -1.1472 -0.4222 9 1 3.7174 -0.9006 -1.4829 10 6 4.4435 -2.4414 -0.1604 11 7 3.8725 -3.5252 -0.9712 12 6 3.7797 -3.1332 -2.3833 13 6 3.0500 -4.2244 -3.1701 14 6 3.8172 -5.5428 -3.0364 15 6 3.0718 -6.6348 -3.7595 16 1 2.7215 -7.5003 -3.2167 17 6 2.8371 -6.5291 -5.1140 18 7 3.2633 -5.4749 -5.7749 19 14 1.9125 -7.8823 -6.0102 20 1 1.5431 -8.9508 -5.0474 21 1 0.6819 -7.3196 -6.6220 22 1 2.7779 -8.4525 -7.0738 23 6 3.9419 -5.9036 -1.5536 24 6 4.6456 -4.7637 -0.8137 25 6 2.2108 -1.3254 0.0006 26 1 -0.3633 0.0003 1.0277 27 1 -0.3634 0.8897 -0.5141 28 1 -0.3633 -0.8902 -0.5135 29 1 1.5087 2.0379 0.0075 30 1 3.5972 2.6273 -1.7085 31 1 5.1500 1.8038 -1.4257 32 1 3.7793 0.9049 -2.1191 33 1 4.1116 -0.1864 1.4613 34 1 5.3529 0.0544 0.2032 35 1 5.4905 -2.3000 -0.4285 36 1 4.3707 -2.7007 0.8958 37 1 3.2282 -2.1965 -2.4647 38 1 4.7821 -3.0008 -2.7901 39 1 2.9950 -3.9403 -4.2210 40 1 2.0426 -4.3477 -2.7727 41 1 4.8115 -5.4310 -3.4690 42 1 3.0985 -5.4006 -6.7279 43 1 4.5241 -6.8191 -1.4496 44 1 2.9487 -6.0538 -1.1303 45 1 5.6442 -4.6236 -1.2278 46 1 4.7231 -5.0114 0.2450 47 1 1.7125 -1.9993 -0.6962 48 1 2.1743 -1.7511 1.0034 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576796023.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:28 Heat of formation + Delta-G solvation = -28.601428 kcal Electronic energy + Delta-G solvation = -22717.746905 eV Core-core repulsion = 19770.554502 eV Total energy + Delta-G solvation = -2947.192404 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.74314 -39.25782 -35.99442 -34.37258 -33.90646 -31.96704 -31.42963 -28.18282 -27.62037 -27.42240 -25.79277 -23.97198 -23.39658 -22.13206 -20.99694 -20.28991 -18.46513 -18.18183 -16.92331 -16.47322 -16.32690 -15.80476 -15.54107 -14.99757 -14.93938 -14.76189 -14.53899 -14.29904 -14.17147 -13.92614 -13.55534 -13.35668 -13.22348 -12.97987 -12.94133 -12.82312 -12.59626 -12.39166 -12.26888 -12.21216 -12.11641 -11.95766 -11.84042 -11.45971 -11.18980 -11.08267 -10.95712 -10.77218 -10.55616 -10.35614 -9.55429 -9.10752 -8.07621 -6.21030 1.39559 1.41378 1.43194 1.52906 2.43922 3.07606 3.19411 3.72907 3.82133 3.94159 4.21038 4.25320 4.27791 4.32893 4.38109 4.43008 4.54475 4.57505 4.65111 4.69469 4.73057 4.76817 4.80610 4.84370 4.91557 4.94984 4.96617 4.98697 5.01091 5.07912 5.11679 5.13361 5.22800 5.25307 5.31182 5.37092 5.38492 5.45132 5.58637 5.59405 5.64292 5.88165 6.01566 6.05298 6.22638 6.33661 6.39787 6.41995 6.91014 7.46825 8.97148 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.022362 B = 0.004160 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.845960 B = 6729.044402 C = 7072.726783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.132 4.132 3 C -0.163 4.163 4 C -0.057 4.057 5 H 0.090 0.910 6 C -0.142 4.142 7 C -0.104 4.104 8 C -0.084 4.084 9 H 0.062 0.938 10 C 0.062 3.938 11 N -0.535 5.535 12 C 0.070 3.930 13 C -0.093 4.093 14 C 0.043 3.957 15 C -0.532 4.532 16 H 0.050 0.950 17 C 0.012 3.988 18 N -0.919 5.919 19 Si 0.953 3.047 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.281 1.281 23 C -0.099 4.099 24 C 0.066 3.934 25 C -0.064 4.064 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.109 0.891 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.039 0.961 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.028 0.972 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.007 0.993 39 H 0.058 0.942 40 H 0.029 0.971 41 H -0.014 1.014 42 H 0.259 0.741 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.018 0.982 46 H 0.087 0.913 47 H 0.057 0.943 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.226 14.185 13.725 19.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.132 4.132 3 C -0.181 4.181 4 C -0.075 4.075 5 H 0.108 0.892 6 C -0.200 4.200 7 C -0.142 4.142 8 C -0.103 4.103 9 H 0.080 0.920 10 C -0.066 4.066 11 N -0.260 5.260 12 C -0.058 4.058 13 C -0.131 4.131 14 C 0.025 3.975 15 C -0.570 4.570 16 H 0.069 0.931 17 C -0.186 4.186 18 N -0.559 5.559 19 Si 0.778 3.222 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.207 1.207 23 C -0.136 4.136 24 C -0.062 4.062 25 C -0.101 4.101 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.127 0.873 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.046 0.954 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.025 0.975 39 H 0.076 0.924 40 H 0.048 0.952 41 H 0.004 0.996 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.036 0.964 46 H 0.106 0.894 47 H 0.075 0.925 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.250 14.157 13.721 19.717 hybrid contribution 0.308 -0.746 -1.389 1.607 sum 0.058 13.411 12.332 18.219 Atomic orbital electron populations 1.20955 0.92209 1.02262 1.02351 1.21124 0.96285 0.95164 1.00579 1.21972 0.96161 0.97016 1.02940 1.19974 0.92111 0.97717 0.97671 0.89218 1.21826 1.01212 1.01039 0.95889 1.21644 0.99522 0.93370 0.99706 1.21282 0.94995 0.93937 1.00046 0.91965 1.22224 0.95609 0.90484 0.98236 1.61980 1.51991 1.03809 1.08230 1.22051 0.97535 0.98407 0.87791 1.21399 0.97353 0.95473 0.98915 1.18668 0.93752 0.93463 0.91625 1.21626 1.36029 1.05491 0.93858 0.93124 1.25740 0.96630 0.97801 0.98447 1.70034 1.47684 1.29604 1.08531 0.85587 0.78403 0.79658 0.78504 1.19170 1.20615 1.20651 1.21529 0.99539 0.96485 0.96092 1.22035 0.93741 0.90128 1.00275 1.20239 0.94240 0.94125 1.01466 0.90849 0.91480 0.92759 0.87328 0.92101 0.91862 0.94193 0.91111 0.91119 0.95383 0.89681 0.90850 0.97490 0.92383 0.95205 0.99636 0.93144 0.92982 0.93019 0.96392 0.89423 0.92476 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 9.87 71.24 0.70 -1.74 16 2 C -0.13 -2.98 5.84 -15.10 -0.09 -3.07 16 3 C -0.16 -3.29 8.61 27.03 0.23 -3.05 16 4 C -0.06 -1.03 3.12 -11.76 -0.04 -1.07 16 5 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 6 C -0.14 -2.68 8.96 71.98 0.64 -2.04 16 7 C -0.10 -2.03 4.74 30.71 0.15 -1.88 16 8 C -0.08 -2.08 1.68 -10.65 -0.02 -2.10 16 9 H 0.06 1.77 4.42 -2.39 -0.01 1.76 16 10 C 0.06 1.67 4.54 86.30 0.39 2.06 16 11 N -0.54 -18.45 4.30 -896.35 -3.86 -22.30 16 12 C 0.07 2.80 5.04 86.33 0.44 3.23 16 13 C -0.09 -4.59 5.12 30.65 0.16 -4.43 16 14 C 0.04 2.26 2.16 -11.46 -0.02 2.23 16 15 C -0.53 -30.27 8.56 25.60 0.22 -30.05 16 16 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 17 C 0.01 0.68 5.31 84.65 0.45 1.13 16 18 N -0.92 -54.32 11.37 21.45 0.24 -54.08 16 19 Si 0.95 44.60 29.54 68.60 2.03 46.62 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 23 C -0.10 -4.20 5.32 30.64 0.16 -4.04 16 24 C 0.07 2.33 5.46 86.32 0.47 2.80 16 25 C -0.06 -1.62 4.79 29.66 0.14 -1.48 16 26 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 1.21 7.90 -2.39 -0.02 1.19 16 28 H 0.05 1.20 8.03 -2.38 -0.02 1.18 16 29 H 0.11 1.93 7.81 -2.91 -0.02 1.90 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.04 0.91 6.59 -2.39 -0.02 0.89 16 33 H 0.07 1.27 8.13 -2.39 -0.02 1.25 16 34 H 0.07 1.28 8.10 -2.39 -0.02 1.26 16 35 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.07 2.75 5.57 -2.39 -0.01 2.73 16 38 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.06 3.23 6.17 -2.39 -0.01 3.22 16 40 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 41 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 42 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 43 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 46 H 0.09 2.57 8.12 -2.39 -0.02 2.55 16 47 H 0.06 1.76 7.73 -2.39 -0.02 1.74 16 48 H 0.07 1.78 8.10 -2.39 -0.02 1.76 16 Total: -1.00 -60.97 356.07 3.28 -57.69 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.88 Total: 15.57 kcal Atomic # 6 Polarization: -47.48 SS G_CDS: 3.99 Total: -43.49 kcal Atomic # 7 Polarization: -72.77 SS G_CDS: -3.61 Total: -76.38 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -60.97 3.28 -57.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576796023.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.084 kcal (2) G-P(sol) polarization free energy of solvation -60.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds