Wall clock time and date at job start Mon Mar 30 2020 07:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.40050 * 119.83772 * 289.04214 * 3 2 1 5 5 C 1.36508 * 120.16834 * 180.02562 * 4 3 2 6 6 C 1.39467 * 119.94134 * 359.97438 * 5 4 3 7 7 C 1.40487 * 120.53629 * 359.97438 * 6 5 4 8 8 C 1.38557 * 119.27410 * 0.02562 * 7 6 5 9 9 O 1.35001 * 107.92441 * 179.97438 * 7 6 5 10 10 C 1.33655 * 111.44770 * 0.02562 * 9 7 6 11 11 C 1.37958 * 109.55091 * 0.02562 * 10 9 7 12 12 C 1.47103 * 127.22046 * 179.97438 * 11 10 9 13 13 O 1.21947 * 120.00044 * 180.02562 * 12 11 10 14 14 C 1.41548 * 120.00102 * 0.04783 * 12 11 10 15 15 H 1.08004 * 119.99592 * 353.64392 * 14 12 11 16 16 C 1.40318 * 119.99950 * 173.64918 * 14 12 11 17 17 N 1.30531 * 120.00075 * 6.22772 * 16 14 12 18 18 Si 1.86802 * 119.99763 * 186.22372 * 16 14 12 19 19 H 1.48498 * 109.46974 * 94.98472 * 18 16 14 20 20 H 1.48506 * 109.47053 * 214.98773 * 18 16 14 21 21 H 1.48507 * 109.47212 * 334.98563 * 18 16 14 22 22 H 1.07993 * 119.91078 * 0.02562 * 4 3 2 23 23 H 1.07997 * 120.02574 * 179.97438 * 5 4 3 24 24 H 1.08001 * 120.12712 * 179.97438 * 8 7 6 25 25 H 1.07990 * 125.22222 * 179.97438 * 10 9 7 26 26 H 0.97004 * 119.99778 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2650 -0.3954 1.1484 5 6 4.6300 -0.3969 1.1560 6 6 5.3329 -0.0036 0.0174 7 6 4.6475 0.3952 -1.1423 8 6 3.2620 0.3948 -1.1443 9 8 5.5661 0.7192 -2.0771 10 6 6.8103 0.5613 -1.6150 11 6 6.7651 0.1108 -0.3119 12 6 7.9067 -0.1913 0.5653 13 8 7.7139 -0.5854 1.7031 14 6 9.2290 -0.0241 0.0887 15 1 9.4020 0.2256 -0.9477 16 6 10.3151 -0.1830 0.9629 17 7 10.1153 -0.6029 2.1825 18 14 12.0470 0.2064 0.3810 19 1 12.3972 1.5975 0.7651 20 1 13.0049 -0.7373 1.0113 21 1 12.1157 0.0685 -1.0961 22 1 2.7211 -0.7004 2.0300 23 1 5.1652 -0.7023 2.0429 24 1 2.7211 0.6992 -2.0282 25 1 7.7123 0.7558 -2.1760 26 1 10.8662 -0.7130 2.7867 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000587278481.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:43 Heat of formation + Delta-G solvation = -6.021983 kcal Electronic energy + Delta-G solvation = -15477.708774 eV Core-core repulsion = 12680.150452 eV Total energy + Delta-G solvation = -2797.558322 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.053 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.33623 -39.46279 -38.57539 -37.27975 -34.76447 -33.57018 -31.64871 -31.07838 -28.66492 -25.02711 -24.39243 -23.71630 -21.01992 -19.98866 -18.35324 -18.13865 -17.55330 -17.12946 -16.78078 -15.68939 -15.39278 -15.16012 -14.98838 -14.86100 -14.63717 -14.09100 -13.83415 -13.78473 -13.39192 -13.00039 -12.86420 -12.74286 -12.34967 -12.07739 -11.93841 -11.03885 -10.81103 -9.75081 -9.63426 -9.09174 -8.33883 -7.04484 -0.52034 0.17671 0.91077 1.42368 1.43704 1.45611 1.60048 1.81441 1.86051 2.23720 2.49790 2.80250 2.83778 3.59457 3.68459 3.72541 3.95963 4.04372 4.34222 4.46283 4.63242 4.79646 5.00003 5.17112 5.22149 5.33337 5.48616 5.51370 5.96777 6.09208 6.36632 6.72611 6.82890 8.28936 8.51976 Molecular weight = 241.05amu Principal moments of inertia in cm(-1) A = 0.051545 B = 0.005528 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.082860 B = 5063.863941 C = 5592.781235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.293 3.707 3 C -0.017 4.017 4 C -0.075 4.075 5 C -0.083 4.083 6 C -0.096 4.096 7 C 0.023 3.977 8 C -0.031 4.031 9 O -0.180 6.180 10 C 0.067 3.933 11 C -0.255 4.255 12 C 0.393 3.607 13 O -0.594 6.594 14 C -0.541 4.541 15 H 0.101 0.899 16 C 0.024 3.976 17 N -0.788 5.788 18 Si 0.995 3.005 19 H -0.263 1.263 20 H -0.274 1.274 21 H -0.240 1.240 22 H 0.161 0.839 23 H 0.120 0.880 24 H 0.174 0.826 25 H 0.254 0.746 26 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.203 2.977 -8.183 10.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.022 4.022 3 C -0.020 4.020 4 C -0.095 4.095 5 C -0.102 4.102 6 C -0.098 4.098 7 C -0.024 4.024 8 C -0.052 4.052 9 O -0.079 6.079 10 C 0.001 3.999 11 C -0.258 4.258 12 C 0.292 3.708 13 O -0.488 6.488 14 C -0.572 4.572 15 H 0.119 0.881 16 C -0.195 4.195 17 N -0.417 5.417 18 Si 0.813 3.187 19 H -0.187 1.187 20 H -0.199 1.199 21 H -0.162 1.162 22 H 0.179 0.821 23 H 0.138 0.862 24 H 0.191 0.809 25 H 0.269 0.731 26 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.159 2.825 -7.750 10.922 hybrid contribution 1.487 -0.062 0.415 1.545 sum -5.672 2.763 -7.335 9.675 Atomic orbital electron populations 1.81275 1.12530 1.10248 1.08524 1.25206 0.91811 0.92469 0.92686 1.15390 0.83868 1.07499 0.95273 1.20880 0.92441 0.98191 0.97965 1.20354 0.93895 0.98690 0.97226 1.20366 0.93225 1.00479 0.95695 1.19403 0.91360 1.04178 0.87428 1.19976 0.87554 0.98673 0.98981 1.83777 1.14644 1.70836 1.38689 1.25584 0.85493 0.95616 0.93228 1.23293 0.94416 1.10242 0.97816 1.17931 0.87693 0.79001 0.86157 1.90487 1.87919 1.48074 1.22339 1.21342 0.91972 1.44986 0.98892 0.88065 1.27242 1.06476 0.91695 0.94080 1.70111 1.34802 1.29736 1.07023 0.85037 0.74312 0.78806 0.80496 1.18722 1.19883 1.16218 0.82136 0.86229 0.80863 0.73074 0.90832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -12.31 18.54 19.00 0.35 -11.96 15 2 C 0.29 7.00 15.30 88.33 1.35 8.35 15 3 C -0.02 -0.40 5.74 -21.29 -0.12 -0.52 15 4 C -0.07 -2.00 9.68 22.31 0.22 -1.78 15 5 C -0.08 -3.02 9.82 22.16 0.22 -2.80 15 6 C -0.10 -3.76 6.29 -20.02 -0.13 -3.89 15 7 C 0.02 0.72 7.36 22.89 0.17 0.89 15 8 C -0.03 -0.74 9.77 22.65 0.22 -0.52 15 9 O -0.18 -5.44 10.52 -3.40 -0.04 -5.48 15 10 C 0.07 2.23 11.54 67.75 0.78 3.01 15 11 C -0.26 -11.24 6.34 -18.60 -0.12 -11.36 15 12 C 0.39 21.64 6.91 25.41 0.18 21.81 15 13 O -0.59 -37.87 14.81 -5.14 -0.08 -37.95 15 14 C -0.54 -27.82 9.00 23.59 0.21 -27.61 15 15 H 0.10 4.36 6.92 -2.91 -0.02 4.34 15 16 C 0.02 1.24 5.49 85.39 0.47 1.70 15 17 N -0.79 -44.82 11.75 21.88 0.26 -44.56 15 18 Si 0.99 36.56 29.57 68.60 2.03 38.59 15 19 H -0.26 -9.31 7.11 99.48 0.71 -8.61 15 20 H -0.27 -9.87 7.11 99.48 0.71 -9.17 15 21 H -0.24 -7.91 7.11 99.48 0.71 -7.21 15 22 H 0.16 3.36 8.06 -2.91 -0.02 3.34 15 23 H 0.12 4.96 7.49 -2.91 -0.02 4.94 15 24 H 0.17 2.87 8.06 -2.91 -0.02 2.85 15 25 H 0.25 6.21 7.34 -2.92 -0.02 6.19 15 26 H 0.28 14.33 8.29 -92.71 -0.77 13.56 15 Total: -1.00 -71.04 255.88 7.22 -63.83 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 1.24 Total: 10.24 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: 3.45 Total: -12.71 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: 0.61 Total: -56.52 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -0.11 Total: -43.42 kcal Atomic # 14 Polarization: 36.56 SS G_CDS: 2.03 Total: 38.59 kcal Total: -71.04 7.22 -63.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000587278481.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.804 kcal (2) G-P(sol) polarization free energy of solvation -71.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds