Wall clock time and date at job start Mon Mar 30 2020 07:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.35631 * 125.35641 * 2 1 4 4 H 0.96995 * 124.70070 * 359.94776 * 3 2 1 5 5 C 1.38242 * 110.60128 * 179.97438 * 3 2 1 6 6 C 1.39113 * 132.75805 * 180.02562 * 5 3 2 7 7 C 1.37962 * 119.99692 * 179.97438 * 6 5 3 8 8 Cl 1.73590 * 119.71207 * 179.97438 * 7 6 5 9 9 C 1.38967 * 120.57236 * 359.97438 * 7 6 5 10 10 F 1.35092 * 119.90422 * 179.97438 * 9 7 6 11 11 C 1.38042 * 120.18380 * 0.02936 * 9 7 6 12 12 C 1.39227 * 119.69646 * 359.95060 * 11 9 7 13 13 C 1.38905 * 125.35526 * 179.70046 * 2 1 3 14 14 C 1.40882 * 126.92583 * 0.02562 * 13 2 1 15 15 H 1.08002 * 120.00011 * 30.70847 * 14 13 2 16 16 C 1.39739 * 120.00204 * 210.71042 * 14 13 2 17 17 N 1.31059 * 119.99705 * 19.43945 * 16 14 13 18 18 Si 1.86799 * 119.99990 * 199.44296 * 16 14 13 19 19 H 1.48496 * 109.46943 * 90.00003 * 18 16 14 20 20 H 1.48500 * 109.46805 * 209.99937 * 18 16 14 21 21 H 1.48495 * 109.46984 * 329.99742 * 18 16 14 22 22 H 1.08994 * 109.47025 * 95.03374 * 1 2 3 23 23 H 1.08997 * 109.46728 * 335.03310 * 1 2 3 24 24 H 1.08999 * 109.47134 * 215.03280 * 1 2 3 25 25 H 1.07998 * 119.99831 * 359.97438 * 6 5 3 26 26 H 1.08008 * 120.14897 * 179.97438 * 11 9 7 27 27 H 0.96995 * 119.99733 * 174.41618 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2919 1.1062 0.0000 4 1 1.9611 2.0179 -0.0007 5 6 3.6287 0.7541 0.0006 6 6 4.8022 1.5013 0.0013 7 6 6.0257 0.8639 0.0023 8 17 7.4853 1.8035 0.0025 9 6 6.0998 -0.5238 0.0032 10 9 7.3051 -1.1339 0.0036 11 6 4.9452 -1.2805 0.0024 12 6 3.7054 -0.6470 0.0018 13 6 2.3108 -1.1329 0.0059 14 6 1.8820 -2.4748 0.0124 15 1 0.9518 -2.7469 -0.4642 16 6 2.6602 -3.4540 0.6356 17 7 3.5616 -3.1085 1.5221 18 14 2.4159 -5.2552 0.2050 19 1 3.3074 -5.6192 -0.9253 20 1 2.7443 -6.0951 1.3848 21 1 1.0017 -5.4830 -0.1866 22 1 -0.3633 -0.0902 -1.0236 23 1 -0.3633 0.9316 0.4338 24 1 -0.3633 -0.8415 0.5899 25 1 4.7553 2.5802 0.0010 26 1 5.0035 -2.3590 0.0027 27 1 4.0449 -3.7910 2.0135 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000587630041.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:37 Heat of formation + Delta-G solvation = -11.234907 kcal Electronic energy + Delta-G solvation = -16037.427014 eV Core-core repulsion = 13121.356441 eV Total energy + Delta-G solvation = -2916.070572 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 253.036 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -47.89883 -39.94187 -36.52298 -35.15204 -33.79470 -30.74296 -29.76713 -28.54546 -26.43014 -24.54992 -21.62384 -20.74321 -19.28001 -17.31993 -16.67041 -15.67104 -15.28011 -14.94782 -14.77520 -14.32795 -13.53389 -13.23986 -12.99114 -12.66439 -12.24320 -11.93913 -11.83509 -11.66261 -11.50368 -11.24409 -10.95314 -10.85598 -10.46515 -10.23642 -9.81298 -9.65266 -9.11033 -8.48313 -7.07112 -6.80465 -6.52368 -4.14846 1.84118 2.24210 2.63723 3.01645 3.14664 3.16048 3.78492 4.01242 4.24739 4.58713 5.09214 5.23224 5.56757 5.94682 6.00429 6.08864 6.32515 6.40262 6.44994 6.57262 6.78384 6.84972 7.02697 7.18082 7.38864 7.53449 7.85405 8.13279 8.47421 8.59785 8.93175 8.97130 10.33409 Molecular weight = 253.04amu Principal moments of inertia in cm(-1) A = 0.021517 B = 0.008806 C = 0.006410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.012344 B = 3178.799391 C = 4366.994478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C -0.117 4.117 3 N -0.579 5.579 4 H 0.396 0.604 5 C 0.094 3.906 6 C -0.128 4.128 7 C -0.049 4.049 8 Cl -0.086 7.086 9 C 0.017 3.983 10 F -0.149 7.149 11 C -0.028 4.028 12 C -0.078 4.078 13 C 0.077 3.923 14 C -0.456 4.456 15 H 0.080 0.920 16 C 0.079 3.921 17 N -0.807 5.807 18 Si 0.902 3.098 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.265 1.265 22 H 0.044 0.956 23 H 0.039 0.961 24 H 0.069 0.931 25 H 0.120 0.880 26 H 0.140 0.860 27 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.162 5.068 -1.950 5.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.220 4.220 3 N -0.181 5.181 4 H 0.230 0.770 5 C -0.017 4.017 6 C -0.150 4.150 7 C -0.078 4.078 8 Cl -0.057 7.057 9 C -0.005 4.005 10 F -0.128 7.128 11 C -0.047 4.047 12 C -0.085 4.085 13 C 0.072 3.928 14 C -0.488 4.488 15 H 0.098 0.902 16 C -0.137 4.137 17 N -0.434 5.434 18 Si 0.727 3.273 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.189 1.189 22 H 0.063 0.937 23 H 0.058 0.942 24 H 0.088 0.912 25 H 0.138 0.862 26 H 0.158 0.842 27 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.393 5.090 -1.832 5.424 hybrid contribution 0.236 -0.353 0.010 0.425 sum 0.629 4.737 -1.822 5.114 Atomic orbital electron populations 1.19809 0.89522 1.00742 1.00329 1.20318 0.91992 0.85102 1.24609 1.40887 1.03024 1.07342 1.66855 0.77034 1.17909 0.84289 0.94270 1.05268 1.19292 0.88146 0.98313 1.09261 1.20131 0.86915 0.89479 1.11234 1.98296 1.36935 1.73089 1.97403 1.16953 0.80990 0.88346 1.14184 1.91392 1.42953 1.83318 1.95133 1.20573 0.88805 1.00349 0.94998 1.19094 0.94193 0.90553 1.04644 1.17758 0.86888 0.91896 0.96289 1.18579 1.06547 0.90163 1.33517 0.90230 1.25742 0.93509 1.00924 0.93563 1.69902 1.20385 1.35857 1.17294 0.86417 0.79713 0.82232 0.78917 1.19439 1.20553 1.18865 0.93701 0.94241 0.91207 0.86168 0.84202 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.82 10.17 36.01 0.37 -0.45 15 2 C -0.12 -2.52 7.23 -80.66 -0.58 -3.11 15 3 N -0.58 -11.33 5.99 -6.13 -0.04 -11.37 15 4 H 0.40 6.18 8.96 -40.82 -0.37 5.81 15 5 C 0.09 2.03 7.23 -83.87 -0.61 1.42 15 6 C -0.13 -2.47 9.83 -39.36 -0.39 -2.86 15 7 C -0.05 -1.00 6.32 -39.41 -0.25 -1.24 15 8 Cl -0.09 -1.49 28.58 -51.86 -1.48 -2.97 15 9 C 0.02 0.38 7.27 -39.38 -0.29 0.10 15 10 F -0.15 -3.23 16.81 2.25 0.04 -3.19 15 11 C -0.03 -0.66 8.71 -39.29 -0.34 -1.01 15 12 C -0.08 -1.89 5.78 -104.89 -0.61 -2.50 15 13 C 0.08 1.93 5.72 -104.79 -0.60 1.33 15 14 C -0.46 -11.45 8.93 -38.02 -0.34 -11.79 15 15 H 0.08 1.92 7.91 -52.49 -0.42 1.51 15 16 C 0.08 1.91 4.88 -17.32 -0.08 1.83 15 17 N -0.81 -20.45 10.29 55.54 0.57 -19.88 15 18 Si 0.90 18.46 29.61 -169.99 -5.03 13.43 15 19 H -0.27 -5.52 7.11 56.52 0.40 -5.12 15 20 H -0.28 -5.68 7.11 56.52 0.40 -5.28 15 21 H -0.26 -5.32 7.11 56.52 0.40 -4.92 15 22 H 0.04 0.73 8.14 -51.93 -0.42 0.31 15 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 15 24 H 0.07 1.27 8.02 -51.93 -0.42 0.85 15 25 H 0.12 1.96 8.06 -52.49 -0.42 1.54 15 26 H 0.14 3.46 6.31 -52.48 -0.33 3.13 15 27 H 0.28 6.60 8.31 -40.82 -0.34 6.26 15 LS Contribution 258.55 15.07 3.90 3.90 Total: -1.00 -26.43 258.55 -7.70 -34.13 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -1.93 Total: 4.25 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -3.72 Total: -18.29 kcal Atomic # 7 Polarization: -31.78 SS G_CDS: 0.53 Total: -31.25 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.04 Total: -3.19 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -1.48 Total: -2.97 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -26.43 -7.70 -34.13 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000587630041.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.891 kcal (2) G-P(sol) polarization free energy of solvation -26.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds