Wall clock time and date at job start Mon Mar 30 2020 07:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39139 * 126.24703 * 2 1 4 4 C 1.39914 * 125.69302 * 359.96090 * 3 2 1 5 5 H 1.07999 * 119.99901 * 0.02562 * 4 3 2 6 6 C 1.40172 * 119.99801 * 180.02562 * 4 3 2 7 7 N 1.30764 * 120.00084 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99679 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47214 * 90.00234 * 8 6 4 10 10 H 1.48506 * 109.46858 * 209.99840 * 8 6 4 11 11 H 1.48492 * 109.47304 * 329.99724 * 8 6 4 12 12 N 1.38313 * 108.60617 * 179.97438 * 3 2 1 13 13 H 0.97000 * 125.60752 * 179.97438 * 12 3 2 14 14 C 1.38178 * 108.77597 * 0.02562 * 12 3 2 15 15 C 1.38887 * 132.68394 * 180.25351 * 14 12 3 16 16 C 1.37964 * 120.09334 * 180.21029 * 15 14 12 17 17 C 1.39085 * 120.69373 * 359.48343 * 16 15 14 18 18 F 1.35106 * 119.80769 * 180.25634 * 17 16 15 19 19 C 1.37722 * 120.38859 * 0.28206 * 17 16 15 20 20 Cl 1.73602 * 120.18085 * 179.97438 * 19 17 16 21 21 C 1.40621 * 119.64541 * 359.97438 * 19 17 16 22 22 H 1.08998 * 109.47017 * 270.04298 * 1 2 3 23 23 H 1.08993 * 109.46700 * 30.04556 * 1 2 3 24 24 H 1.09000 * 109.47117 * 150.04784 * 1 2 3 25 25 H 0.96993 * 119.99894 * 180.02562 * 7 6 4 26 26 H 1.08002 * 119.95100 * 359.97021 * 15 14 12 27 27 H 1.08002 * 119.65540 * 179.76943 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3297 1.1221 0.0000 4 6 1.8960 2.4523 -0.0008 5 1 0.8394 2.6757 -0.0010 6 6 2.8329 3.4950 -0.0012 7 7 4.1122 3.2244 -0.0004 8 14 2.2537 5.2709 -0.0015 9 1 2.1006 5.7419 1.3985 10 1 3.2530 6.1172 -0.7020 11 1 0.9475 5.3655 -0.7013 12 7 3.6478 0.7030 0.0006 13 1 4.4250 1.2834 0.0004 14 6 3.6752 -0.6785 0.0004 15 6 4.7146 -1.5997 0.0053 16 6 4.4406 -2.9519 -0.0008 17 6 3.1275 -3.4102 -0.0011 18 9 2.8797 -4.7383 -0.0018 19 6 2.0782 -2.5181 -0.0011 20 17 0.4412 -3.0961 -0.0021 21 6 2.3399 -1.1365 -0.0003 22 1 -0.3633 0.0008 1.0276 23 1 -0.3632 0.8895 -0.5145 24 1 -0.3633 -0.8904 -0.5131 25 1 4.7605 3.9459 -0.0003 26 1 5.7388 -1.2570 0.0099 27 1 5.2544 -3.6620 -0.0007 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000587630897.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:39 Heat of formation + Delta-G solvation = -39.253321 kcal Electronic energy + Delta-G solvation = -15946.610075 eV Core-core repulsion = 13029.324533 eV Total energy + Delta-G solvation = -2917.285542 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 253.036 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.69008 -41.65331 -37.81902 -36.99719 -35.24750 -33.46227 -30.85147 -30.14375 -28.15470 -26.33250 -23.30675 -22.74330 -20.50869 -19.37459 -18.38427 -17.71760 -17.01189 -16.66786 -16.52784 -15.58256 -15.16181 -15.10316 -14.54159 -14.14072 -13.87242 -13.41660 -13.32686 -13.27282 -13.16814 -12.92452 -12.71975 -12.53022 -11.96934 -11.81968 -11.77603 -11.18746 -11.14585 -10.15541 -9.07419 -9.01013 -8.35385 -6.44628 0.14639 0.69877 1.32716 1.38337 1.40918 1.55471 2.02161 2.13351 2.86844 2.91495 3.20632 3.44918 4.04752 4.37001 4.47781 4.63578 4.88751 4.96333 5.06905 5.14538 5.17583 5.26109 5.33753 5.43656 5.66310 5.77007 5.96900 6.06058 6.51027 6.56608 6.87851 7.46329 8.05189 Molecular weight = 253.04amu Principal moments of inertia in cm(-1) A = 0.034695 B = 0.006907 C = 0.005778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.845243 B = 4053.143316 C = 4844.843359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 C -0.365 4.365 3 C 0.274 3.726 4 C -0.454 4.454 5 H 0.107 0.893 6 C 0.036 3.964 7 N -0.841 5.841 8 Si 1.008 2.992 9 H -0.261 1.261 10 H -0.265 1.265 11 H -0.255 1.255 12 N -0.590 5.590 13 H 0.426 0.574 14 C 0.020 3.980 15 C -0.081 4.081 16 C -0.188 4.188 17 C 0.079 3.921 18 F -0.145 7.145 19 C -0.107 4.107 20 Cl -0.074 7.074 21 C -0.031 4.031 22 H 0.034 0.966 23 H 0.047 0.953 24 H 0.052 0.948 25 H 0.306 0.694 26 H 0.146 0.854 27 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.940 -1.224 -0.078 1.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.369 4.369 3 C 0.162 3.838 4 C -0.487 4.487 5 H 0.125 0.875 6 C -0.179 4.179 7 N -0.470 5.470 8 Si 0.827 3.173 9 H -0.186 1.186 10 H -0.190 1.190 11 H -0.178 1.178 12 N -0.206 5.206 13 H 0.275 0.725 14 C -0.087 4.087 15 C -0.102 4.102 16 C -0.208 4.208 17 C 0.058 3.942 18 F -0.124 7.124 19 C -0.135 4.135 20 Cl -0.045 7.045 21 C -0.037 4.037 22 H 0.052 0.948 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.118 0.882 26 H 0.164 0.836 27 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.140 -1.142 -0.082 1.616 hybrid contribution 0.043 0.499 0.035 0.502 sum 1.184 -0.642 -0.047 1.348 Atomic orbital electron populations 1.19701 0.90143 1.00371 0.99231 1.19470 0.95404 0.89729 1.32297 1.18342 0.81658 0.93763 0.90063 1.19455 0.96483 0.88441 1.44282 0.87492 1.27047 0.93907 1.07204 0.89773 1.68712 1.03287 1.38283 1.36706 0.84759 0.79455 0.73377 0.79677 1.18556 1.18957 1.17846 1.43141 1.08924 1.03405 1.65177 0.72457 1.18719 0.94731 0.85281 1.09922 1.20041 0.97538 0.90772 1.01891 1.20536 0.93758 0.95587 1.10885 1.17113 0.93206 0.76279 1.07647 1.91410 1.95254 1.31153 1.94546 1.20220 0.84464 0.91908 1.16919 1.98248 1.20476 1.88389 1.97375 1.17708 0.93795 0.90716 1.01469 0.94758 0.93443 0.92935 0.88201 0.83643 0.82085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.59 9.53 71.24 0.68 -0.91 15 2 C -0.37 -17.89 6.26 -18.99 -0.12 -18.01 15 3 C 0.27 13.73 6.67 38.74 0.26 13.99 15 4 C -0.45 -21.55 9.03 23.15 0.21 -21.34 15 5 H 0.11 4.83 7.18 -2.91 -0.02 4.81 15 6 C 0.04 1.53 5.50 85.32 0.47 2.00 15 7 N -0.84 -36.47 10.61 21.87 0.23 -36.24 15 8 Si 1.01 32.65 29.56 68.60 2.03 34.68 15 9 H -0.26 -8.28 7.11 99.48 0.71 -7.57 15 10 H -0.27 -8.17 7.11 99.48 0.71 -7.46 15 11 H -0.25 -8.15 7.11 99.48 0.71 -7.44 15 12 N -0.59 -28.22 5.84 -180.12 -1.05 -29.28 15 13 H 0.43 19.69 6.18 -92.71 -0.57 19.11 15 14 C 0.02 0.90 7.23 39.02 0.28 1.18 15 15 C -0.08 -3.05 10.06 22.36 0.22 -2.82 15 16 C -0.19 -6.64 10.00 22.41 0.22 -6.41 15 17 C 0.08 3.15 7.26 22.35 0.16 3.31 15 18 F -0.14 -5.49 16.81 44.97 0.76 -4.73 15 19 C -0.11 -4.69 6.38 22.73 0.14 -4.55 15 20 Cl -0.07 -2.91 25.96 -2.72 -0.07 -2.98 15 21 C -0.03 -1.48 6.03 -21.33 -0.13 -1.61 15 22 H 0.03 1.40 8.14 -2.39 -0.02 1.38 15 23 H 0.05 1.92 7.45 -2.39 -0.02 1.91 15 24 H 0.05 2.14 5.99 -2.39 -0.01 2.12 15 25 H 0.31 11.76 8.29 -92.71 -0.77 10.99 15 26 H 0.15 4.49 8.06 -2.91 -0.02 4.47 15 27 H 0.16 4.45 8.06 -2.91 -0.02 4.43 15 Total: -1.00 -51.94 253.41 4.96 -46.98 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 0.66 Total: 26.75 kcal Atomic # 6 Polarization: -37.57 SS G_CDS: 2.41 Total: -35.17 kcal Atomic # 7 Polarization: -64.69 SS G_CDS: -0.82 Total: -65.51 kcal Atomic # 9 Polarization: -5.49 SS G_CDS: 0.76 Total: -4.73 kcal Atomic # 14 Polarization: 32.65 SS G_CDS: 2.03 Total: 34.68 kcal Atomic # 17 Polarization: -2.91 SS G_CDS: -0.07 Total: -2.98 kcal Total: -51.94 4.96 -46.98 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000587630897.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.723 kcal (2) G-P(sol) polarization free energy of solvation -51.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds