Wall clock time and date at job start Mon Mar 30 2020 07:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39141 * 126.23921 * 2 1 4 4 C 1.39901 * 125.69757 * 0.02562 * 3 2 1 5 5 H 1.08002 * 119.99956 * 17.42489 * 4 3 2 6 6 C 1.40168 * 119.99990 * 197.43526 * 4 3 2 7 7 N 1.30766 * 119.99525 * 194.96691 * 6 4 3 8 8 Si 1.86797 * 120.00224 * 14.96029 * 6 4 3 9 9 H 1.48494 * 109.47232 * 270.00505 * 8 6 4 10 10 H 1.48499 * 109.46815 * 30.00459 * 8 6 4 11 11 H 1.48504 * 109.47080 * 150.00384 * 8 6 4 12 12 N 1.38328 * 108.60733 * 179.73515 * 3 2 1 13 13 H 0.96995 * 125.61299 * 180.24302 * 12 3 2 14 14 C 1.38149 * 108.77118 * 0.27081 * 12 3 2 15 15 C 1.38895 * 132.75423 * 179.97438 * 14 12 3 16 16 C 1.38077 * 119.91142 * 180.02562 * 15 14 12 17 17 Cl 1.73602 * 119.67298 * 180.02562 * 16 15 14 18 18 C 1.39269 * 120.64832 * 0.02562 * 16 15 14 19 19 F 1.35098 * 119.73907 * 179.97438 * 18 16 15 20 20 C 1.36549 * 120.53041 * 359.97350 * 18 16 15 21 21 C 1.40540 * 119.80121 * 0.02562 * 20 18 16 22 22 H 1.09004 * 109.47430 * 90.01634 * 1 2 3 23 23 H 1.09000 * 109.47159 * 210.01671 * 1 2 3 24 24 H 1.09004 * 109.46918 * 330.02185 * 1 2 3 25 25 H 0.96992 * 120.00312 * 354.66508 * 7 6 4 26 26 H 1.08003 * 120.03912 * 0.04773 * 15 14 12 27 27 H 1.07994 * 120.10123 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3295 1.1223 0.0000 4 6 1.8958 2.4523 0.0005 5 1 0.8800 2.6889 0.2810 6 6 2.7794 3.4778 -0.3633 7 7 2.4850 4.7221 -0.0895 8 14 4.3774 3.0669 -1.2389 9 1 5.4476 2.8392 -0.2349 10 1 4.1938 1.8392 -2.0538 11 1 4.7613 4.1958 -2.1241 12 7 3.6478 0.7033 0.0061 13 1 4.4249 1.2837 0.0107 14 6 3.6753 -0.6779 0.0038 15 6 4.7137 -1.6004 0.0070 16 6 4.4337 -2.9524 0.0028 17 17 5.7363 -4.0999 0.0076 18 6 3.1164 -3.4046 -0.0053 19 9 2.8634 -4.7317 -0.0099 20 6 2.0785 -2.5173 -0.0086 21 6 2.3400 -1.1365 -0.0044 22 1 -0.3634 -0.0003 -1.0277 23 1 -0.3633 -0.8898 0.5141 24 1 -0.3633 0.8902 0.5135 25 1 1.6223 4.9432 0.2948 26 1 5.7388 -1.2604 0.0132 27 1 1.0597 -2.8756 -0.0153 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000587631033.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:35 Heat of formation + Delta-G solvation = -33.421145 kcal Electronic energy + Delta-G solvation = -15873.343383 eV Core-core repulsion = 12956.310743 eV Total energy + Delta-G solvation = -2917.032640 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 253.036 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.75941 -41.99230 -38.17396 -36.96173 -35.43911 -33.89515 -30.89101 -30.65602 -28.11229 -26.46581 -23.23553 -22.96250 -20.73304 -19.91915 -18.97373 -18.06914 -17.11340 -16.61707 -16.50827 -16.00058 -15.20902 -15.16824 -14.75028 -14.36143 -14.18612 -13.76250 -13.66493 -13.39152 -13.23765 -12.95632 -12.54060 -12.16233 -12.02132 -11.86259 -11.67914 -11.55741 -11.18748 -10.39336 -9.58760 -9.12268 -8.61768 -6.57092 0.06285 0.47104 1.09564 1.16051 1.28869 1.48030 1.77317 1.98668 2.38498 2.78763 3.02689 3.34684 3.75852 4.30679 4.32615 4.44519 4.65498 4.79511 4.99188 5.06853 5.11669 5.14947 5.24998 5.32153 5.38228 5.51774 5.75912 5.92047 6.24536 6.37671 6.60321 6.88116 7.80678 Molecular weight = 253.04amu Principal moments of inertia in cm(-1) A = 0.029774 B = 0.007243 C = 0.005940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.193331 B = 3864.750821 C = 4712.401586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 C -0.352 4.352 3 C 0.267 3.733 4 C -0.513 4.513 5 H 0.083 0.917 6 C 0.012 3.988 7 N -0.816 5.816 8 Si 1.065 2.935 9 H -0.240 1.240 10 H -0.258 1.258 11 H -0.261 1.261 12 N -0.622 5.622 13 H 0.403 0.597 14 C 0.029 3.971 15 C -0.071 4.071 16 C -0.120 4.120 17 Cl -0.062 7.062 18 C 0.093 3.907 19 F -0.142 7.142 20 C -0.160 4.160 21 C -0.018 4.018 22 H 0.043 0.957 23 H 0.057 0.943 24 H 0.040 0.960 25 H 0.289 0.711 26 H 0.150 0.850 27 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.158 -7.838 -0.800 8.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.355 4.355 3 C 0.159 3.841 4 C -0.546 4.546 5 H 0.101 0.899 6 C -0.207 4.207 7 N -0.439 5.439 8 Si 0.884 3.116 9 H -0.165 1.165 10 H -0.183 1.183 11 H -0.186 1.186 12 N -0.238 5.238 13 H 0.246 0.754 14 C -0.074 4.074 15 C -0.093 4.093 16 C -0.148 4.148 17 Cl -0.034 7.034 18 C 0.072 3.928 19 F -0.121 7.121 20 C -0.180 4.180 21 C -0.023 4.023 22 H 0.061 0.939 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.100 0.900 26 H 0.167 0.833 27 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.659 -7.157 -1.340 9.222 hybrid contribution -1.379 -0.237 0.770 1.598 sum 4.280 -7.394 -0.570 8.563 Atomic orbital electron populations 1.19610 0.89769 1.00231 0.99790 1.19490 0.95561 0.89594 1.30903 1.18117 0.80998 0.93941 0.91023 1.20020 1.01293 0.90119 1.43155 0.89876 1.28186 1.06679 0.92197 0.93623 1.70515 1.23537 1.20395 1.29412 0.83800 0.71632 0.77936 0.78234 1.16476 1.18293 1.18626 1.42702 1.07301 1.04442 1.69382 0.75390 1.18211 0.95223 0.83600 1.10411 1.19658 0.98239 0.88871 1.02536 1.20026 0.87103 0.90283 1.17374 1.98302 1.47992 1.59524 1.97566 1.16658 0.91999 0.77370 1.06778 1.91437 1.94936 1.31270 1.94477 1.20074 0.98584 0.90605 1.08740 1.17962 0.92488 0.92506 0.99353 0.93855 0.92448 0.94058 0.89996 0.83272 0.83963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.41 10.16 71.24 0.72 -0.69 15 2 C -0.35 -15.57 6.26 -18.99 -0.12 -15.69 15 3 C 0.27 12.37 6.14 38.74 0.24 12.61 15 4 C -0.51 -24.84 9.40 23.14 0.22 -24.62 15 5 H 0.08 4.21 7.38 -2.91 -0.02 4.19 15 6 C 0.01 0.54 5.52 85.32 0.47 1.01 15 7 N -0.82 -39.33 13.65 21.87 0.30 -39.03 15 8 Si 1.06 39.49 25.08 68.60 1.72 41.21 15 9 H -0.24 -7.67 6.81 99.48 0.68 -6.99 15 10 H -0.26 -9.66 6.80 99.48 0.68 -8.98 15 11 H -0.26 -9.40 7.11 99.48 0.71 -8.69 15 12 N -0.62 -26.07 4.74 -180.11 -0.85 -26.92 15 13 H 0.40 15.24 4.49 -92.71 -0.42 14.82 15 14 C 0.03 1.17 7.24 39.03 0.28 1.46 15 15 C -0.07 -2.48 9.83 22.39 0.22 -2.26 15 16 C -0.12 -4.12 6.33 22.48 0.14 -3.97 15 17 Cl -0.06 -1.85 28.57 -2.72 -0.08 -1.92 15 18 C 0.09 3.35 7.21 22.12 0.16 3.50 15 19 F -0.14 -4.91 16.80 44.97 0.76 -4.16 15 20 C -0.16 -5.98 10.04 22.44 0.23 -5.76 15 21 C -0.02 -0.76 6.09 -21.34 -0.13 -0.89 15 22 H 0.04 1.57 8.14 -2.39 -0.02 1.56 15 23 H 0.06 1.94 8.14 -2.39 -0.02 1.92 15 24 H 0.04 1.59 7.39 -2.38 -0.02 1.57 15 25 H 0.29 13.72 8.73 -92.71 -0.81 12.91 15 26 H 0.15 4.32 8.06 -2.91 -0.02 4.30 15 27 H 0.14 4.75 8.06 -2.91 -0.02 4.72 15 Total: -1.00 -49.79 254.18 4.99 -44.80 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.71 Total: 21.33 kcal Atomic # 6 Polarization: -37.73 SS G_CDS: 2.43 Total: -35.30 kcal Atomic # 7 Polarization: -65.40 SS G_CDS: -0.55 Total: -65.95 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.76 Total: -4.16 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 1.72 Total: 41.21 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.08 Total: -1.92 kcal Total: -49.79 4.99 -44.80 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000587631033.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.380 kcal (2) G-P(sol) polarization free energy of solvation -49.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds