Wall clock time and date at job start Mon Mar 30 2020 07:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.36880 * 125.04569 * 2 1 4 4 H 0.97004 * 125.06057 * 359.97438 * 3 2 1 5 5 C 1.37698 * 109.87368 * 179.82452 * 3 2 1 6 6 C 1.39168 * 133.40627 * 180.12620 * 5 3 2 7 7 C 1.37706 * 119.96616 * 180.33728 * 6 5 3 8 8 C 1.38844 * 120.69133 * 359.97438 * 7 6 5 9 9 C 1.37822 * 120.35468 * 359.97438 * 8 7 6 10 10 F 1.35097 * 120.19619 * 180.02562 * 9 8 7 11 11 C 1.39823 * 119.61154 * 0.03977 * 9 8 7 12 12 C 1.34213 * 125.04392 * 180.30759 * 2 1 3 13 13 C 1.50699 * 126.50535 * 359.97438 * 12 2 1 14 14 C 1.50698 * 109.47199 * 89.98030 * 13 12 2 15 15 H 1.07996 * 119.99821 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00226 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99682 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99953 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47085 * 59.99745 * 18 16 14 20 20 H 1.48503 * 109.46703 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47171 * 299.99309 * 18 16 14 22 22 H 1.09002 * 109.47152 * 269.69548 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.69648 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.69629 * 1 2 3 25 25 H 1.07998 * 120.01987 * 0.30858 * 6 5 3 26 26 H 1.07995 * 119.65828 * 179.97438 * 7 6 5 27 27 H 1.08004 * 119.81929 * 180.02562 * 8 7 6 28 28 H 1.09006 * 109.47271 * 209.98128 * 13 12 2 29 29 H 1.08997 * 109.47265 * 329.97848 * 13 12 2 30 30 H 0.97007 * 119.99415 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2930 1.1206 0.0000 4 1 1.9630 2.0328 -0.0004 5 6 3.6220 0.7603 0.0040 6 6 4.8096 1.4858 0.0079 7 6 6.0185 0.8264 0.0044 8 6 6.0689 -0.5611 -0.0026 9 6 4.9057 -1.3003 -0.0055 10 9 4.9584 -2.6503 -0.0118 11 6 3.6706 -0.6449 -0.0023 12 6 2.2777 -1.0988 -0.0059 13 6 1.8007 -2.5283 -0.0130 14 6 1.6408 -2.9974 -1.4362 15 1 1.8619 -2.3273 -2.2537 16 6 1.2111 -4.2818 -1.6946 17 7 0.9413 -5.0977 -0.6990 18 14 1.0121 -4.8630 -3.4587 19 1 2.3182 -4.7738 -4.1595 20 1 0.5422 -6.2717 -3.4656 21 1 0.0181 -4.0057 -4.1531 22 1 -0.3633 -0.0055 1.0277 23 1 -0.3633 -0.8873 -0.5185 24 1 -0.3633 0.8927 -0.5091 25 1 4.7832 2.5654 0.0132 26 1 6.9370 1.3943 0.0070 27 1 7.0248 -1.0639 -0.0049 28 1 2.5304 -3.1574 0.4971 29 1 0.8419 -2.5940 0.5011 30 1 0.6386 -6.0012 -0.8808 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000587634764.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:58 Heat of formation + Delta-G solvation = -4.239570 kcal Electronic energy + Delta-G solvation = -15855.602216 eV Core-core repulsion = 13144.097158 eV Total energy + Delta-G solvation = -2711.505058 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.091 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.06556 -40.72805 -36.51684 -33.45426 -31.60038 -30.51225 -29.20312 -27.52912 -25.76268 -22.89775 -21.96386 -21.09363 -18.47243 -17.44451 -16.20422 -16.02219 -15.45425 -14.93904 -14.76204 -14.45376 -14.11787 -13.94438 -12.79212 -12.36107 -12.31067 -12.23851 -11.92284 -11.68057 -11.39198 -11.16008 -10.83977 -10.81661 -10.62156 -10.13923 -9.68399 -9.42275 -8.66702 -8.30357 -7.80008 -6.85045 -5.91497 -3.94868 1.45415 1.89963 3.30919 3.38013 3.41994 3.47113 3.52423 4.18387 4.54127 4.86834 5.09821 5.26176 5.40774 5.47591 5.51458 5.69600 5.79353 5.98736 6.04090 6.22187 6.49357 6.52809 6.62878 6.69536 6.75198 7.30157 7.36939 7.54018 7.71294 7.90766 8.02922 8.09197 8.47604 9.09159 9.67678 11.17226 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.025468 B = 0.009081 C = 0.007505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.142157 B = 3082.741520 C = 3730.090334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.037 3.963 3 N -0.595 5.595 4 H 0.408 0.592 5 C 0.120 3.880 6 C -0.154 4.154 7 C -0.079 4.079 8 C -0.206 4.206 9 C 0.165 3.835 10 F -0.126 7.126 11 C -0.141 4.141 12 C -0.094 4.094 13 C 0.079 3.921 14 C -0.503 4.503 15 H 0.053 0.947 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.278 1.278 22 H 0.066 0.934 23 H 0.096 0.904 24 H 0.055 0.945 25 H 0.117 0.883 26 H 0.126 0.874 27 H 0.128 0.872 28 H 0.030 0.970 29 H 0.028 0.972 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.565 12.887 2.213 13.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.067 4.067 3 N -0.199 5.199 4 H 0.244 0.756 5 C 0.011 3.989 6 C -0.176 4.176 7 C -0.099 4.099 8 C -0.227 4.227 9 C 0.145 3.855 10 F -0.104 7.104 11 C -0.147 4.147 12 C -0.099 4.099 13 C 0.042 3.958 14 C -0.542 4.542 15 H 0.071 0.929 16 C -0.142 4.142 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 H 0.084 0.916 23 H 0.115 0.885 24 H 0.074 0.926 25 H 0.135 0.865 26 H 0.144 0.856 27 H 0.146 0.854 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.380 12.726 2.249 13.645 hybrid contribution -0.139 -0.127 -1.038 1.055 sum 4.241 12.599 1.212 13.348 Atomic orbital electron populations 1.20354 0.87878 1.03538 1.02187 1.20061 0.93355 0.84855 1.08414 1.41622 1.03615 1.07956 1.66730 0.75604 1.17932 0.84906 0.93074 1.02979 1.19864 0.89649 0.98617 1.09427 1.20415 0.96641 0.93109 0.99713 1.20723 0.96671 0.94436 1.10851 1.17199 0.92481 0.76946 0.98839 1.91540 1.97135 1.28709 1.93015 1.19242 0.93531 0.92466 1.09478 1.20994 0.88447 0.97319 1.03177 1.17771 0.96336 0.84323 0.97385 1.21011 1.44253 0.97237 0.91658 0.92903 1.24973 0.95678 0.96690 0.96902 1.69950 1.46034 1.06816 1.30653 0.86672 0.78505 0.77611 0.85330 1.20266 1.21289 1.20332 0.91573 0.88542 0.92634 0.86504 0.85574 0.85415 0.95148 0.95382 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.31 9.98 36.01 0.36 -0.95 16 2 C 0.04 0.70 7.08 -81.76 -0.58 0.13 16 3 N -0.60 -9.55 6.07 -6.95 -0.04 -9.59 16 4 H 0.41 4.83 8.96 -40.82 -0.37 4.47 16 5 C 0.12 2.13 7.27 -83.99 -0.61 1.52 16 6 C -0.15 -2.23 10.07 -39.43 -0.40 -2.63 16 7 C -0.08 -1.11 10.01 -39.55 -0.40 -1.50 16 8 C -0.21 -3.39 10.01 -39.51 -0.40 -3.78 16 9 C 0.17 3.43 7.34 -39.14 -0.29 3.14 16 10 F -0.13 -2.92 16.67 2.25 0.04 -2.88 16 11 C -0.14 -3.03 6.33 -105.09 -0.67 -3.70 16 12 C -0.09 -2.16 5.50 -102.71 -0.57 -2.72 16 13 C 0.08 2.13 5.01 -29.04 -0.15 1.98 16 14 C -0.50 -14.51 9.09 -34.44 -0.31 -14.83 16 15 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 18 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.10 1.76 7.66 -51.93 -0.40 1.36 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 26 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 27 H 0.13 1.79 8.06 -52.48 -0.42 1.36 16 28 H 0.03 0.89 7.57 -51.93 -0.39 0.50 16 29 H 0.03 0.76 7.69 -51.93 -0.40 0.36 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 268.44 15.07 4.05 4.05 Total: -1.00 -32.35 268.44 -7.55 -39.89 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -3.21 Total: -0.56 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -4.09 Total: -21.75 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.69 Total: -35.87 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.04 Total: -2.88 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -32.35 -7.55 -39.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000587634764.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.654 kcal (2) G-P(sol) polarization free energy of solvation -32.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds