Wall clock time and date at job start Mon Mar 30 2020 07:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47233 * 2 1 4 4 C 1.39149 * 126.24724 * 90.02045 * 3 2 1 5 5 C 1.39914 * 125.70499 * 0.02562 * 4 3 2 6 6 H 1.07997 * 119.99618 * 20.03652 * 5 4 3 7 7 C 1.40154 * 120.00224 * 200.04165 * 5 4 3 8 8 N 1.30773 * 119.99722 * 19.94537 * 7 5 4 9 9 Si 1.86800 * 120.00048 * 199.94597 * 7 5 4 10 10 H 1.48503 * 109.46791 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.46827 * 299.99805 * 9 7 5 12 12 H 1.48498 * 109.46867 * 59.99883 * 9 7 5 13 13 N 1.38328 * 108.59393 * 179.73501 * 4 3 2 14 14 H 0.97004 * 125.60458 * 180.22850 * 13 4 3 15 15 C 1.38093 * 108.78005 * 0.22888 * 13 4 3 16 16 C 1.38892 * 132.69646 * 180.02562 * 15 13 4 17 17 C 1.37988 * 120.09101 * 180.08548 * 16 15 13 18 18 C 1.38859 * 120.74179 * 359.89027 * 17 16 15 19 19 C 1.37701 * 120.41506 * 0.07853 * 18 17 16 20 20 F 1.35096 * 120.18388 * 180.02562 * 19 18 17 21 21 C 1.40733 * 119.63013 * 359.97438 * 19 18 17 22 22 H 1.08998 * 109.47006 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47345 * 299.99990 * 1 2 3 24 24 H 1.09001 * 109.47076 * 59.99924 * 1 2 3 25 25 H 1.08993 * 109.47345 * 240.00010 * 2 1 3 26 26 H 1.09001 * 109.47076 * 120.00076 * 2 1 3 27 27 H 0.97001 * 120.00656 * 5.81326 * 8 7 5 28 28 H 1.08003 * 119.95637 * 359.97438 * 16 15 13 29 29 H 1.08011 * 119.63294 * 179.97438 * 17 16 15 30 30 H 1.08003 * 119.79657 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3070 2.1964 1.1222 5 6 2.1634 1.7874 2.4525 6 1 2.1318 0.7351 2.6934 7 6 2.0605 2.7432 3.4724 8 7 1.7094 3.9699 3.1858 9 14 2.4250 2.2650 5.2409 10 1 2.2458 3.4480 6.1205 11 1 1.4949 1.1874 5.6640 12 1 3.8246 1.7796 5.3440 13 7 2.7520 3.4371 0.7027 14 1 3.0155 4.1684 1.2830 15 6 2.7593 3.4634 -0.6779 16 6 3.1097 4.4416 -1.5995 17 6 3.0133 4.1845 -2.9518 18 6 2.5695 2.9511 -3.4099 19 6 2.2160 1.9625 -2.5189 20 9 1.7853 0.7640 -2.9697 21 6 2.3069 2.2073 -1.1360 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.4387 4.1986 2.2828 28 1 3.4565 5.4055 -1.2573 29 1 3.2874 4.9507 -3.6620 30 1 2.5003 2.7661 -4.4717 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000587635230.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:01 Heat of formation + Delta-G solvation = -26.838310 kcal Electronic energy + Delta-G solvation = -16059.549385 eV Core-core repulsion = 13347.064372 eV Total energy + Delta-G solvation = -2712.485013 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -47.82333 -40.06399 -36.12027 -33.69942 -33.02662 -29.71824 -28.72156 -27.72554 -25.14699 -22.42624 -21.61929 -21.09097 -18.95941 -17.73782 -16.81744 -15.56068 -15.12625 -14.68060 -14.36521 -14.27477 -13.99723 -13.33050 -13.22179 -12.69571 -12.33858 -12.01949 -11.96030 -11.40905 -11.36864 -10.91022 -10.66320 -10.58984 -10.46441 -10.23421 -10.07839 -9.72632 -9.31755 -8.49191 -7.59002 -7.47895 -6.68006 -4.62929 1.93300 2.43425 2.93587 3.01685 3.21087 3.70115 3.78926 4.23775 4.65469 4.88971 5.30098 5.61487 5.72386 5.95305 6.03651 6.10083 6.38673 6.44086 6.49371 6.59681 6.76807 6.88005 6.96197 7.03412 7.15324 7.19142 7.26110 7.38194 7.50524 7.74907 7.86841 7.90557 8.29234 8.59012 8.87158 9.70847 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.030463 B = 0.009100 C = 0.007314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.934889 B = 3076.022322 C = 3827.335325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.014 4.014 3 C -0.331 4.331 4 C 0.284 3.716 5 C -0.503 4.503 6 H 0.099 0.901 7 C 0.037 3.963 8 N -0.812 5.812 9 Si 1.074 2.926 10 H -0.272 1.272 11 H -0.271 1.271 12 H -0.272 1.272 13 N -0.618 5.618 14 H 0.410 0.590 15 C 0.063 3.937 16 C -0.123 4.123 17 C -0.152 4.152 18 C -0.168 4.168 19 C 0.066 3.934 20 F -0.153 7.153 21 C -0.053 4.053 22 H 0.035 0.965 23 H 0.051 0.949 24 H 0.042 0.958 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.292 0.708 28 H 0.106 0.894 29 H 0.114 0.886 30 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.162 -0.695 -2.356 2.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.052 4.052 3 C -0.334 4.334 4 C 0.176 3.824 5 C -0.536 4.536 6 H 0.117 0.883 7 C -0.183 4.183 8 N -0.438 5.438 9 Si 0.896 3.104 10 H -0.197 1.197 11 H -0.196 1.196 12 H -0.198 1.198 13 N -0.228 5.228 14 H 0.249 0.751 15 C -0.042 4.042 16 C -0.145 4.145 17 C -0.171 4.171 18 C -0.188 4.188 19 C 0.046 3.954 20 F -0.132 7.132 21 C -0.059 4.059 22 H 0.054 0.946 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.106 0.894 28 H 0.124 0.876 29 H 0.132 0.868 30 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.274 -0.018 -0.793 1.500 hybrid contribution -0.116 -0.244 -1.515 1.539 sum 1.158 -0.262 -2.308 2.595 Atomic orbital electron populations 1.21712 0.97476 0.99077 1.01248 1.19325 0.93797 0.92482 0.99580 1.18937 1.26522 0.98571 0.89411 1.17919 0.89638 0.81318 0.93556 1.19946 1.46426 0.97778 0.89407 0.88322 1.27308 0.91072 0.92275 1.07693 1.70577 1.27480 1.19925 1.25852 0.83490 0.78030 0.76907 0.71991 1.19692 1.19610 1.19763 1.42504 1.60588 1.15733 1.03990 0.75137 1.17968 1.06708 0.95684 0.83812 1.19832 1.05358 0.97236 0.92077 1.20075 1.06530 0.96533 0.93948 1.20454 1.06297 0.94038 0.98017 1.17099 1.05960 0.81669 0.90689 1.91343 1.88086 1.44188 1.89596 1.17895 1.02035 0.94659 0.91270 0.94599 0.93014 0.93879 0.93614 0.93096 0.89387 0.87606 0.86831 0.86848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.89 37.16 0.37 -2.40 16 2 C -0.01 -0.30 6.00 -27.88 -0.17 -0.47 16 3 C -0.33 -8.12 5.51 -103.29 -0.57 -8.69 16 4 C 0.28 7.09 6.19 -83.97 -0.52 6.57 16 5 C -0.50 -12.26 8.95 -38.24 -0.34 -12.60 16 6 H 0.10 2.33 7.28 -52.49 -0.38 1.95 16 7 C 0.04 0.85 5.37 -17.28 -0.09 0.76 16 8 N -0.81 -19.72 12.72 55.56 0.71 -19.02 16 9 Si 1.07 19.74 29.98 -169.99 -5.10 14.65 16 10 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 11 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 12 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 13 N -0.62 -14.52 5.10 -8.30 -0.04 -14.56 16 14 H 0.41 9.15 7.22 -40.82 -0.29 8.86 16 15 C 0.06 1.45 7.23 -83.70 -0.61 0.85 16 16 C -0.12 -2.45 10.06 -39.43 -0.40 -2.85 16 17 C -0.15 -2.78 10.02 -39.44 -0.40 -3.17 16 18 C -0.17 -3.26 10.00 -39.55 -0.40 -3.65 16 19 C 0.07 1.46 7.37 -38.84 -0.29 1.18 16 20 F -0.15 -3.37 16.18 2.25 0.04 -3.33 16 21 C -0.05 -1.28 6.09 -106.86 -0.65 -1.93 16 22 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 24 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.05 0.98 7.26 -51.93 -0.38 0.60 16 26 H 0.05 1.08 7.41 -51.93 -0.38 0.69 16 27 H 0.29 7.24 6.25 -40.82 -0.26 6.98 16 28 H 0.11 1.83 8.06 -52.48 -0.42 1.41 16 29 H 0.11 1.70 8.06 -52.48 -0.42 1.27 16 30 H 0.11 1.89 8.06 -52.48 -0.42 1.47 16 LS Contribution 262.00 15.07 3.95 3.95 Total: -1.00 -26.07 262.00 -7.53 -33.60 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -3.03 Total: 11.12 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: -4.05 Total: -26.41 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.66 Total: -33.57 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.04 Total: -3.33 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.10 Total: 14.65 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -26.07 -7.53 -33.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000587635230.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.758 kcal (2) G-P(sol) polarization free energy of solvation -26.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds