Wall clock time and date at job start Mon Mar 30 2020 07:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47233 * 2 1 4 4 C 1.39149 * 126.24724 * 90.02045 * 3 2 1 5 5 C 1.39914 * 125.70499 * 0.02562 * 4 3 2 6 6 H 1.07997 * 119.99618 * 20.03652 * 5 4 3 7 7 C 1.40154 * 120.00224 * 200.04165 * 5 4 3 8 8 N 1.30773 * 119.99722 * 19.94537 * 7 5 4 9 9 Si 1.86800 * 120.00048 * 199.94597 * 7 5 4 10 10 H 1.48503 * 109.46791 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.46827 * 299.99805 * 9 7 5 12 12 H 1.48498 * 109.46867 * 59.99883 * 9 7 5 13 13 N 1.38328 * 108.59393 * 179.73501 * 4 3 2 14 14 H 0.97004 * 125.60458 * 180.22850 * 13 4 3 15 15 C 1.38093 * 108.78005 * 0.22888 * 13 4 3 16 16 C 1.38892 * 132.69646 * 180.02562 * 15 13 4 17 17 C 1.37988 * 120.09101 * 180.08548 * 16 15 13 18 18 C 1.38859 * 120.74179 * 359.89027 * 17 16 15 19 19 C 1.37701 * 120.41506 * 0.07853 * 18 17 16 20 20 F 1.35096 * 120.18388 * 180.02562 * 19 18 17 21 21 C 1.40733 * 119.63013 * 359.97438 * 19 18 17 22 22 H 1.08998 * 109.47006 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47345 * 299.99990 * 1 2 3 24 24 H 1.09001 * 109.47076 * 59.99924 * 1 2 3 25 25 H 1.08993 * 109.47345 * 240.00010 * 2 1 3 26 26 H 1.09001 * 109.47076 * 120.00076 * 2 1 3 27 27 H 0.97001 * 120.00656 * 5.81326 * 8 7 5 28 28 H 1.08003 * 119.95637 * 359.97438 * 16 15 13 29 29 H 1.08011 * 119.63294 * 179.97438 * 17 16 15 30 30 H 1.08003 * 119.79657 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3070 2.1964 1.1222 5 6 2.1634 1.7874 2.4525 6 1 2.1318 0.7351 2.6934 7 6 2.0605 2.7432 3.4724 8 7 1.7094 3.9699 3.1858 9 14 2.4250 2.2650 5.2409 10 1 2.2458 3.4480 6.1205 11 1 1.4949 1.1874 5.6640 12 1 3.8246 1.7796 5.3440 13 7 2.7520 3.4371 0.7027 14 1 3.0155 4.1684 1.2830 15 6 2.7593 3.4634 -0.6779 16 6 3.1097 4.4416 -1.5995 17 6 3.0133 4.1845 -2.9518 18 6 2.5695 2.9511 -3.4099 19 6 2.2160 1.9625 -2.5189 20 9 1.7853 0.7640 -2.9697 21 6 2.3069 2.2073 -1.1360 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.4387 4.1986 2.2828 28 1 3.4565 5.4055 -1.2573 29 1 3.2874 4.9507 -3.6620 30 1 2.5003 2.7661 -4.4717 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000587635230.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:01 Heat of formation + Delta-G solvation = -39.219870 kcal Electronic energy + Delta-G solvation = -16060.086290 eV Core-core repulsion = 13347.064372 eV Total energy + Delta-G solvation = -2713.021918 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.53290 -41.78925 -37.77656 -35.43065 -34.75388 -31.38290 -30.43736 -29.43356 -26.87881 -24.13239 -23.30825 -22.76894 -20.68534 -19.51175 -18.50264 -17.26434 -16.78246 -16.40022 -16.05403 -15.81271 -15.64710 -15.04523 -14.89691 -14.38365 -14.01506 -13.65184 -13.64575 -13.05895 -12.95399 -12.50810 -12.27929 -12.10127 -12.04203 -11.87682 -11.74225 -11.41787 -11.02572 -10.21053 -9.40773 -9.19908 -8.41594 -6.46212 0.26159 0.80349 1.40597 1.51672 1.79955 2.03111 2.26655 2.50486 2.98013 3.09573 3.64478 4.09221 4.19173 4.29468 4.39675 4.51063 4.72642 4.76713 4.82308 4.96336 5.08157 5.21197 5.33404 5.34834 5.46672 5.47569 5.55985 5.64547 5.74705 5.97890 6.10644 6.19863 6.56150 6.79188 7.09852 7.88133 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.030463 B = 0.009100 C = 0.007314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.934889 B = 3076.022322 C = 3827.335325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.013 4.013 3 C -0.355 4.355 4 C 0.255 3.745 5 C -0.529 4.529 6 H 0.096 0.904 7 C 0.007 3.993 8 N -0.831 5.831 9 Si 1.123 2.877 10 H -0.272 1.272 11 H -0.257 1.257 12 H -0.261 1.261 13 N -0.618 5.618 14 H 0.411 0.589 15 C 0.041 3.959 16 C -0.128 4.128 17 C -0.130 4.130 18 C -0.162 4.162 19 C 0.046 3.954 20 F -0.157 7.157 21 C -0.089 4.089 22 H 0.066 0.934 23 H 0.036 0.964 24 H 0.032 0.968 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.279 0.721 28 H 0.133 0.867 29 H 0.161 0.839 30 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.643 -0.118 -3.436 3.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.051 4.051 3 C -0.360 4.360 4 C 0.147 3.853 5 C -0.562 4.562 6 H 0.114 0.886 7 C -0.208 4.208 8 N -0.457 5.457 9 Si 0.939 3.061 10 H -0.197 1.197 11 H -0.181 1.181 12 H -0.186 1.186 13 N -0.228 5.228 14 H 0.250 0.750 15 C -0.063 4.063 16 C -0.149 4.149 17 C -0.149 4.149 18 C -0.182 4.182 19 C 0.026 3.974 20 F -0.136 7.136 21 C -0.095 4.095 22 H 0.085 0.915 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.151 0.849 29 H 0.179 0.821 30 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.754 0.558 -1.905 2.649 hybrid contribution -0.233 -0.365 -1.451 1.514 sum 1.521 0.193 -3.356 3.689 Atomic orbital electron populations 1.21595 0.96188 1.00681 0.99968 1.19342 0.94901 0.91443 0.99401 1.19380 1.26986 0.99703 0.89890 1.18215 0.90697 0.82239 0.94144 1.20092 1.48148 0.97984 0.89959 0.88624 1.28602 0.89728 0.91576 1.10889 1.70680 1.29311 1.20706 1.25034 0.82896 0.78681 0.76918 0.67557 1.19694 1.18117 1.18585 1.42481 1.60538 1.15357 1.04458 0.75045 1.18445 1.07521 0.96466 0.83878 1.20296 1.04532 0.97664 0.92386 1.20679 1.03316 0.96883 0.94009 1.20926 1.04454 0.93466 0.99349 1.17467 1.06793 0.82447 0.90664 1.91326 1.88234 1.44536 1.89470 1.18232 1.03603 0.95433 0.92220 0.91488 0.94464 0.94834 0.93671 0.93155 0.90778 0.84911 0.82106 0.83466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.13 9.89 71.98 0.71 -4.42 16 2 C -0.01 -0.58 6.00 29.85 0.18 -0.40 16 3 C -0.36 -17.96 5.51 -19.00 -0.10 -18.07 16 4 C 0.26 13.22 6.19 38.74 0.24 13.46 16 5 C -0.53 -26.65 8.95 23.14 0.21 -26.44 16 6 H 0.10 4.69 7.28 -2.91 -0.02 4.67 16 7 C 0.01 0.32 5.37 85.32 0.46 0.78 16 8 N -0.83 -41.28 12.72 21.87 0.28 -41.00 16 9 Si 1.12 39.73 29.98 68.60 2.06 41.79 16 10 H -0.27 -9.55 7.11 99.48 0.71 -8.85 16 11 H -0.26 -8.44 7.11 99.48 0.71 -7.73 16 12 H -0.26 -8.71 7.11 99.48 0.71 -8.00 16 13 N -0.62 -29.79 5.10 -180.17 -0.92 -30.71 16 14 H 0.41 18.91 7.22 -92.70 -0.67 18.24 16 15 C 0.04 1.90 7.23 39.03 0.28 2.18 16 16 C -0.13 -4.74 10.06 22.37 0.22 -4.51 16 17 C -0.13 -4.20 10.02 22.36 0.22 -3.97 16 18 C -0.16 -5.74 10.00 22.29 0.22 -5.52 16 19 C 0.05 2.00 7.37 22.75 0.17 2.17 16 20 F -0.16 -6.79 16.18 44.97 0.73 -6.06 16 21 C -0.09 -4.35 6.09 -21.31 -0.13 -4.47 16 22 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 23 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.04 1.96 7.26 -2.39 -0.02 1.95 16 26 H 0.05 2.19 7.41 -2.39 -0.02 2.17 16 27 H 0.28 14.35 6.25 -92.71 -0.58 13.77 16 28 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 29 H 0.16 3.75 8.06 -2.90 -0.02 3.72 16 30 H 0.15 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -57.31 262.00 5.51 -51.80 By element: Atomic # 1 Polarization: 32.71 SS G_CDS: 0.69 Total: 33.40 kcal Atomic # 6 Polarization: -51.91 SS G_CDS: 2.68 Total: -49.22 kcal Atomic # 7 Polarization: -71.07 SS G_CDS: -0.64 Total: -71.71 kcal Atomic # 9 Polarization: -6.79 SS G_CDS: 0.73 Total: -6.06 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.06 Total: 41.79 kcal Total: -57.31 5.51 -51.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000587635230.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.580 kcal (2) G-P(sol) polarization free energy of solvation -57.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds