Wall clock time and date at job start Mon Mar 30 2020 07:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47523 * 2 1 4 4 C 1.50703 * 109.46682 * 239.99972 * 2 1 3 5 5 C 1.39145 * 126.24543 * 59.69078 * 4 2 1 6 6 C 1.39888 * 125.69753 * 359.97438 * 5 4 2 7 7 H 1.08000 * 120.00259 * 353.68242 * 6 5 4 8 8 C 1.40160 * 120.00366 * 173.68860 * 6 5 4 9 9 N 1.30773 * 119.99754 * 6.63515 * 8 6 5 10 10 Si 1.86795 * 120.00282 * 186.64298 * 8 6 5 11 11 H 1.48496 * 109.47422 * 94.97951 * 10 8 6 12 12 H 1.48502 * 109.47070 * 214.98156 * 10 8 6 13 13 H 1.48505 * 109.47176 * 334.97916 * 10 8 6 14 14 N 1.38359 * 108.60285 * 179.86684 * 5 4 2 15 15 H 0.97000 * 125.60295 * 180.18787 * 14 5 4 16 16 C 1.38055 * 108.77963 * 0.40246 * 14 5 4 17 17 C 1.38863 * 132.76328 * 179.72900 * 16 14 5 18 18 C 1.38227 * 119.87260 * 179.97438 * 17 16 14 19 19 F 1.35101 * 119.67632 * 180.02562 * 18 17 16 20 20 C 1.39197 * 120.64247 * 0.04811 * 18 17 16 21 21 C 1.36373 * 120.55929 * 359.96872 * 20 18 17 22 22 C 1.40526 * 119.84074 * 0.02562 * 21 20 18 23 23 H 1.09007 * 109.46889 * 59.99508 * 1 2 3 24 24 H 1.08999 * 109.46478 * 300.00136 * 1 2 3 25 25 H 1.08991 * 109.47441 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46906 * 120.00489 * 2 1 3 27 27 H 1.08996 * 109.47169 * 59.99661 * 3 2 1 28 28 H 1.09003 * 109.47032 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.46718 * 299.99964 * 3 2 1 30 30 H 0.96992 * 120.00131 * 180.02562 * 9 8 6 31 31 H 1.07997 * 120.06115 * 359.97438 * 17 16 14 32 32 H 1.07994 * 119.72330 * 179.97438 * 20 18 17 33 33 H 1.08005 * 120.07639 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.7725 -0.3536 -2.5501 6 6 0.9947 0.7330 -2.9639 7 1 0.4531 1.3180 -2.2353 8 6 0.9182 1.0626 -4.3240 9 7 1.4659 0.2809 -5.2180 10 14 0.0342 2.6184 -4.8598 11 1 1.0185 3.7198 -5.0118 12 1 -0.6456 2.3793 -6.1583 13 1 -0.9734 2.9931 -3.8352 14 7 2.4139 -1.2517 -3.3846 15 1 2.3993 -1.2310 -4.3543 16 6 3.0739 -2.1847 -2.6101 17 6 3.8542 -3.2893 -2.9252 18 6 4.3991 -4.0583 -1.9140 19 9 5.1580 -5.1318 -2.2250 20 6 4.1731 -3.7375 -0.5785 21 6 3.4100 -2.6578 -0.2442 22 6 2.8454 -1.8609 -1.2546 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3632 0.5139 0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 0.8899 27 1 1.6768 1.9563 0.8899 28 1 3.1301 1.4423 -0.0005 29 1 1.6768 1.9563 -0.8901 30 1 1.4133 0.5091 -6.1592 31 1 4.0349 -3.5471 -3.9582 32 1 4.6058 -4.3488 0.1996 33 1 3.2394 -2.4163 0.7946 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000587635775.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:35 Heat of formation + Delta-G solvation = -38.971314 kcal Electronic energy + Delta-G solvation = -17702.901671 eV Core-core repulsion = 14834.352912 eV Total energy + Delta-G solvation = -2868.548759 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.55150 -41.62576 -37.57854 -35.99858 -35.13799 -31.85297 -30.41173 -29.40880 -27.64855 -26.84589 -23.46601 -22.81819 -22.34438 -19.84879 -19.30103 -18.32259 -17.31751 -16.78925 -16.47781 -16.31466 -15.66496 -15.03249 -14.84098 -14.72911 -14.41525 -14.22864 -13.82749 -13.56658 -13.37549 -13.10301 -12.75633 -12.65867 -12.60690 -12.00755 -11.98786 -11.81962 -11.73880 -11.22516 -11.20685 -10.98933 -10.18069 -8.94185 -8.92364 -8.33262 -6.29769 0.36283 0.90897 1.33625 1.40309 1.54570 2.08345 2.14207 2.87122 3.11468 3.34015 3.79259 4.03781 4.28105 4.39243 4.48976 4.70472 4.74690 4.82361 4.91101 5.06831 5.09207 5.16626 5.19412 5.29566 5.32756 5.38320 5.49417 5.70568 5.72200 5.76288 5.89769 5.96080 6.16440 6.31217 6.62751 6.76540 7.01122 7.52386 8.13677 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.024013 B = 0.007982 C = 0.006242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.746709 B = 3507.085681 C = 4484.408720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.011 3.989 3 C -0.137 4.137 4 C -0.342 4.342 5 C 0.271 3.729 6 C -0.453 4.453 7 H 0.117 0.883 8 C 0.030 3.970 9 N -0.852 5.852 10 Si 0.998 3.002 11 H -0.264 1.264 12 H -0.271 1.271 13 H -0.249 1.249 14 N -0.597 5.597 15 H 0.420 0.580 16 C 0.030 3.970 17 C -0.159 4.159 18 C 0.024 3.976 19 F -0.158 7.158 20 C -0.160 4.160 21 C -0.109 4.109 22 C -0.065 4.065 23 H 0.051 0.949 24 H 0.063 0.937 25 H 0.035 0.965 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.034 0.966 29 H 0.051 0.949 30 H 0.300 0.700 31 H 0.117 0.883 32 H 0.145 0.855 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.064 1.737 4.240 4.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.008 4.008 3 C -0.194 4.194 4 C -0.346 4.346 5 C 0.160 3.840 6 C -0.486 4.486 7 H 0.135 0.865 8 C -0.184 4.184 9 N -0.482 5.482 10 Si 0.819 3.181 11 H -0.189 1.189 12 H -0.196 1.196 13 H -0.172 1.172 14 N -0.211 5.211 15 H 0.267 0.733 16 C -0.077 4.077 17 C -0.181 4.181 18 C 0.004 3.996 19 F -0.137 7.137 20 C -0.180 4.180 21 C -0.128 4.128 22 C -0.070 4.070 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.111 0.889 31 H 0.135 0.865 32 H 0.162 0.838 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.010 1.669 3.832 4.300 hybrid contribution 0.104 0.001 -1.387 1.390 sum -0.906 1.670 2.445 3.096 Atomic orbital electron populations 1.21838 0.95835 1.00463 1.01351 1.18955 0.94436 0.94336 0.93075 1.21805 0.99714 0.96523 1.01367 1.19416 1.17491 1.04350 0.93355 1.18325 0.89508 0.88368 0.87824 1.19536 1.25140 1.10243 0.93637 0.86528 1.27044 0.94082 1.01324 0.95923 1.68815 1.37519 1.37525 1.04366 0.84883 0.78668 0.76081 0.78508 1.18929 1.19583 1.17176 1.43216 1.44575 1.23666 1.09686 0.73263 1.18344 1.02181 0.94973 0.92157 1.19758 1.03061 0.96615 0.98674 1.17061 1.00484 0.88499 0.93581 1.91354 1.74456 1.53770 1.94088 1.20503 1.03449 1.00214 0.93829 1.20212 0.99207 0.94982 0.98401 1.18454 0.99685 0.97038 0.91831 0.93014 0.91802 0.94605 0.92308 0.91826 0.94666 0.92994 0.88881 0.86475 0.83753 0.84560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.78 9.02 71.98 0.65 -4.13 16 2 C 0.01 0.42 3.11 -11.54 -0.04 0.38 16 3 C -0.14 -4.76 9.03 71.98 0.65 -4.11 16 4 C -0.34 -15.74 4.97 -18.99 -0.09 -15.84 16 5 C 0.27 13.40 6.54 38.73 0.25 13.65 16 6 C -0.45 -21.17 7.55 23.14 0.17 -20.99 16 7 H 0.12 5.09 4.53 -2.91 -0.01 5.08 16 8 C 0.03 1.31 5.49 85.32 0.47 1.78 16 9 N -0.85 -39.15 10.65 21.87 0.23 -38.92 16 10 Si 1.00 33.80 29.57 68.60 2.03 35.83 16 11 H -0.26 -8.83 7.11 99.48 0.71 -8.13 16 12 H -0.27 -8.94 7.11 99.48 0.71 -8.23 16 13 H -0.25 -8.03 7.11 99.48 0.71 -7.33 16 14 N -0.60 -29.97 5.84 -180.15 -1.05 -31.02 16 15 H 0.42 20.99 6.22 -92.71 -0.58 20.41 16 16 C 0.03 1.45 7.24 39.05 0.28 1.74 16 17 C -0.16 -7.03 10.04 22.42 0.23 -6.80 16 18 C 0.02 0.97 7.30 22.50 0.16 1.14 16 19 F -0.16 -6.14 17.26 44.97 0.78 -5.36 16 20 C -0.16 -6.01 9.94 22.07 0.22 -5.79 16 21 C -0.11 -4.33 9.95 22.39 0.22 -4.11 16 22 C -0.06 -3.01 6.09 -21.34 -0.13 -3.14 16 23 H 0.05 1.92 5.50 -2.38 -0.01 1.91 16 24 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.06 2.09 7.76 -2.39 -0.02 2.07 16 27 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.05 1.93 5.83 -2.38 -0.01 1.91 16 30 H 0.30 12.44 8.29 -92.71 -0.77 11.67 16 31 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 32 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 33 H 0.14 4.61 7.81 -2.91 -0.02 4.58 16 Total: -1.00 -52.12 275.52 5.60 -46.52 By element: Atomic # 1 Polarization: 38.62 SS G_CDS: 0.57 Total: 39.19 kcal Atomic # 6 Polarization: -49.29 SS G_CDS: 3.05 Total: -46.24 kcal Atomic # 7 Polarization: -69.12 SS G_CDS: -0.82 Total: -69.94 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 0.78 Total: -5.36 kcal Atomic # 14 Polarization: 33.80 SS G_CDS: 2.03 Total: 35.83 kcal Total: -52.12 5.60 -46.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000587635775.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.547 kcal (2) G-P(sol) polarization free energy of solvation -52.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds