Wall clock time and date at job start Mon Mar 30 2020 07:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.46963 * 2 1 4 4 C 1.39138 * 126.24425 * 90.02544 * 3 2 1 5 5 C 1.39897 * 125.69644 * 0.02562 * 4 3 2 6 6 H 1.07994 * 120.00067 * 341.66913 * 5 4 3 7 7 C 1.40158 * 119.99867 * 161.66886 * 5 4 3 8 8 N 1.30770 * 120.00102 * 339.18269 * 7 5 4 9 9 Si 1.86803 * 119.99896 * 159.18699 * 7 5 4 10 10 H 1.48498 * 109.46975 * 180.02562 * 9 7 5 11 11 H 1.48503 * 109.46752 * 299.99803 * 9 7 5 12 12 H 1.48492 * 109.47469 * 59.99733 * 9 7 5 13 13 N 1.38355 * 108.60678 * 179.75458 * 4 3 2 14 14 H 0.97006 * 125.60923 * 180.20881 * 13 4 3 15 15 C 1.38058 * 108.77804 * 0.24135 * 13 4 3 16 16 C 1.38860 * 132.76498 * 180.02562 * 15 13 4 17 17 C 1.38224 * 119.87473 * 180.02562 * 16 15 13 18 18 F 1.35101 * 119.68304 * 179.97438 * 17 16 15 19 19 C 1.39206 * 120.63713 * 359.91882 * 17 16 15 20 20 C 1.36368 * 120.56454 * 0.06063 * 19 17 16 21 21 C 1.40533 * 119.83521 * 359.97438 * 20 19 17 22 22 H 1.09002 * 109.47118 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47080 * 299.99441 * 1 2 3 24 24 H 1.08998 * 109.47584 * 59.99595 * 1 2 3 25 25 H 1.09005 * 109.47080 * 240.00559 * 2 1 3 26 26 H 1.08998 * 109.47584 * 120.00405 * 2 1 3 27 27 H 0.97002 * 120.00293 * 354.06433 * 8 7 5 28 28 H 1.08000 * 120.06230 * 359.95606 * 16 15 13 29 29 H 1.08000 * 119.71835 * 180.02562 * 19 17 16 30 30 H 1.08005 * 120.07949 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3069 2.1963 1.1222 5 6 2.1634 1.7870 2.4522 6 1 1.5494 0.9312 2.6906 7 6 2.8165 2.4878 3.4754 8 7 3.8514 3.2371 3.1972 9 14 2.2085 2.3512 5.2364 10 1 3.0634 3.1829 6.1211 11 1 0.8046 2.8290 5.3138 12 1 2.2737 0.9337 5.6741 13 7 2.7515 3.4376 0.7030 14 1 3.0146 4.1689 1.2834 15 6 2.7583 3.4643 -0.6774 16 6 3.1076 4.4418 -1.5997 17 6 3.0095 4.1780 -2.9530 18 9 3.3499 5.1319 -3.8470 19 6 2.5643 2.9384 -3.4036 20 6 2.2159 1.9625 -2.5171 21 6 2.3066 2.2075 -1.1363 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 4.2202 3.2412 2.3000 28 1 3.4543 5.4067 -1.2604 29 1 2.4937 2.7481 -4.4644 30 1 1.8711 1.0037 -2.8754 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000587635792.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:59 Heat of formation + Delta-G solvation = -38.364815 kcal Electronic energy + Delta-G solvation = -15799.795027 eV Core-core repulsion = 13086.810188 eV Total energy + Delta-G solvation = -2712.984840 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.63302 -41.84530 -37.73412 -35.33052 -34.87097 -31.60433 -30.19776 -29.61459 -26.73076 -24.14684 -23.47980 -22.56177 -20.62885 -19.53078 -18.61596 -17.29264 -17.05827 -16.40237 -15.89263 -15.81773 -15.24643 -15.14398 -14.93225 -14.44057 -14.10286 -13.83919 -13.60229 -12.98744 -12.96060 -12.74465 -12.15285 -12.07324 -12.04869 -11.82457 -11.55947 -11.37458 -11.05448 -10.31696 -9.40980 -9.11563 -8.50368 -6.43806 0.24686 0.75849 1.39336 1.51878 1.79635 2.02976 2.26466 2.46073 2.95813 3.14806 3.64741 3.89689 4.18345 4.39747 4.44832 4.57794 4.69881 4.78501 4.86638 4.99960 5.12871 5.20467 5.32150 5.38025 5.48840 5.52596 5.55423 5.63707 5.76468 5.99045 6.15595 6.18961 6.60365 6.80776 7.08586 7.87008 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.028922 B = 0.008301 C = 0.006649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.901598 B = 3372.163468 C = 4210.105729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.014 4.014 3 C -0.348 4.348 4 C 0.251 3.749 5 C -0.527 4.527 6 H 0.101 0.899 7 C 0.005 3.995 8 N -0.832 5.832 9 Si 1.122 2.878 10 H -0.275 1.275 11 H -0.262 1.262 12 H -0.254 1.254 13 N -0.621 5.621 14 H 0.407 0.593 15 C 0.038 3.962 16 C -0.156 4.156 17 C 0.031 3.969 18 F -0.154 7.154 19 C -0.154 4.154 20 C -0.106 4.106 21 C -0.057 4.057 22 H 0.066 0.934 23 H 0.035 0.965 24 H 0.043 0.957 25 H 0.057 0.943 26 H 0.045 0.955 27 H 0.279 0.721 28 H 0.123 0.877 29 H 0.149 0.851 30 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.463 -2.391 -2.921 5.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.052 4.052 3 C -0.352 4.352 4 C 0.144 3.856 5 C -0.559 4.559 6 H 0.119 0.881 7 C -0.210 4.210 8 N -0.459 5.459 9 Si 0.938 3.062 10 H -0.200 1.200 11 H -0.186 1.186 12 H -0.178 1.178 13 N -0.232 5.232 14 H 0.245 0.755 15 C -0.067 4.067 16 C -0.178 4.178 17 C 0.012 3.988 18 F -0.133 7.133 19 C -0.174 4.174 20 C -0.125 4.125 21 C -0.062 4.062 22 H 0.085 0.915 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.141 0.859 29 H 0.167 0.833 30 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.130 -1.694 -1.412 3.829 hybrid contribution 0.320 0.424 -1.474 1.567 sum -2.810 -1.269 -2.885 4.223 Atomic orbital electron populations 1.21667 0.95869 1.00864 1.00564 1.19365 0.94961 0.90896 0.99960 1.19475 1.27494 0.98686 0.89563 1.18331 0.90668 0.82190 0.94460 1.20147 1.29582 1.16330 0.89883 0.88149 1.28634 0.91799 0.89684 1.10882 1.70690 1.17300 1.32496 1.25390 0.82911 0.76743 0.78853 0.67646 1.19988 1.18613 1.17753 1.42521 1.62253 1.14134 1.04261 0.75455 1.18160 1.07576 0.97186 0.83779 1.19786 1.07919 0.99093 0.91047 1.17064 1.08658 0.87884 0.85239 1.91375 1.91035 1.63619 1.67292 1.20583 1.04033 0.91798 1.01002 1.20253 1.02559 0.99681 0.90001 1.18399 1.00580 0.93068 0.94113 0.91511 0.94579 0.93753 0.92447 0.93629 0.90757 0.85898 0.83289 0.84248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 9.89 71.98 0.71 -3.78 16 2 C -0.01 -0.54 6.16 29.85 0.18 -0.36 16 3 C -0.35 -16.22 5.51 -19.00 -0.10 -16.33 16 4 C 0.25 12.59 6.23 38.73 0.24 12.83 16 5 C -0.53 -25.79 8.83 23.14 0.20 -25.59 16 6 H 0.10 4.72 7.66 -2.91 -0.02 4.70 16 7 C 0.00 0.22 5.37 85.32 0.46 0.68 16 8 N -0.83 -41.35 12.69 21.87 0.28 -41.07 16 9 Si 1.12 39.19 29.98 68.60 2.06 41.25 16 10 H -0.28 -9.65 7.11 99.48 0.71 -8.95 16 11 H -0.26 -8.62 7.11 99.48 0.71 -7.91 16 12 H -0.25 -8.09 7.11 99.48 0.71 -7.38 16 13 N -0.62 -30.04 5.12 -180.16 -0.92 -30.97 16 14 H 0.41 19.21 7.08 -92.70 -0.66 18.56 16 15 C 0.04 1.74 7.24 39.04 0.28 2.02 16 16 C -0.16 -6.53 10.04 22.42 0.23 -6.30 16 17 C 0.03 1.22 7.30 22.50 0.16 1.39 16 18 F -0.15 -5.68 17.26 44.97 0.78 -4.90 16 19 C -0.15 -5.48 9.94 22.07 0.22 -5.26 16 20 C -0.11 -4.04 10.07 22.39 0.23 -3.81 16 21 C -0.06 -2.56 6.09 -21.34 -0.13 -2.69 16 22 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 24 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 26 H 0.05 1.81 7.74 -2.39 -0.02 1.79 16 27 H 0.28 14.37 6.20 -92.71 -0.57 13.79 16 28 H 0.12 4.72 8.06 -2.91 -0.02 4.69 16 29 H 0.15 4.23 8.06 -2.91 -0.02 4.21 16 30 H 0.14 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -53.91 264.46 5.57 -48.34 By element: Atomic # 1 Polarization: 33.85 SS G_CDS: 0.70 Total: 34.55 kcal Atomic # 6 Polarization: -49.88 SS G_CDS: 2.68 Total: -47.20 kcal Atomic # 7 Polarization: -71.39 SS G_CDS: -0.64 Total: -72.04 kcal Atomic # 9 Polarization: -5.68 SS G_CDS: 0.78 Total: -4.90 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.06 Total: 41.25 kcal Total: -53.91 5.57 -48.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000587635792.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.979 kcal (2) G-P(sol) polarization free energy of solvation -53.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds