Wall clock time and date at job start Mon Mar 30 2020 07:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.33205 * 125.36898 * 2 1 4 4 H 0.97000 * 124.39805 * 0.02562 * 3 2 1 5 5 C 1.38556 * 111.20211 * 180.26114 * 3 2 1 6 6 C 1.38984 * 132.69018 * 179.73757 * 5 3 2 7 7 C 1.38045 * 119.99822 * 180.02562 * 6 5 3 8 8 N 1.48013 * 119.69559 * 179.97438 * 7 6 5 9 9 O 1.31698 * 119.99839 * 0.02562 * 8 7 6 10 10 O 1.31700 * 119.99994 * 180.02562 * 8 7 6 11 11 C 1.38515 * 120.61129 * 0.02562 * 7 6 5 12 12 C 1.38094 * 120.16909 * 359.97438 * 11 7 6 13 13 C 1.38950 * 119.67653 * 0.03906 * 12 11 7 14 14 C 1.41086 * 125.36773 * 179.81182 * 2 1 3 15 15 C 1.38487 * 127.16382 * 0.02562 * 14 2 1 16 16 H 1.08007 * 120.00323 * 328.93573 * 15 14 2 17 17 C 1.46694 * 120.00255 * 149.20594 * 15 14 2 18 18 N 1.29464 * 119.99798 * 342.03616 * 17 15 14 19 19 Si 1.86800 * 120.00354 * 162.03164 * 17 15 14 20 20 H 1.48498 * 109.47155 * 60.00109 * 19 17 15 21 21 H 1.48499 * 109.47205 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46924 * 300.00151 * 19 17 15 23 23 H 1.09004 * 109.47113 * 265.03402 * 1 2 3 24 24 H 1.08999 * 109.47422 * 25.03627 * 1 2 3 25 25 H 1.09000 * 109.47243 * 145.03602 * 1 2 3 26 26 H 1.07998 * 119.99984 * 0.02562 * 6 5 3 27 27 H 1.07995 * 119.91874 * 180.02562 * 11 7 6 28 28 H 1.07993 * 120.15904 * 180.02562 * 12 11 7 29 29 H 0.96999 * 120.00125 * 185.10292 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2780 1.0862 0.0000 4 1 1.9425 1.9964 0.0004 5 6 3.6214 0.7471 -0.0059 6 6 4.7851 1.5070 -0.0129 7 6 6.0166 0.8833 -0.0183 8 7 7.2516 1.6991 -0.0263 9 8 7.1724 3.0137 -0.0277 10 8 8.4297 1.1103 -0.0319 11 6 6.1073 -0.4989 -0.0173 12 6 4.9614 -1.2695 -0.0104 13 6 3.7168 -0.6517 -0.0052 14 6 2.3236 -1.1505 0.0038 15 6 1.9078 -2.4715 0.0076 16 1 0.9813 -2.7447 0.4907 17 6 2.7288 -3.5007 -0.6393 18 7 3.6367 -3.1599 -1.4971 19 14 2.4645 -5.3030 -0.2255 20 1 1.0715 -5.6897 -0.5648 21 1 3.4141 -6.1349 -1.0075 22 1 2.6982 -5.5172 1.2253 23 1 -0.3633 -0.0890 1.0238 24 1 -0.3634 0.9311 -0.4349 25 1 -0.3634 -0.8422 -0.5889 26 1 4.7258 2.5853 -0.0141 27 1 7.0765 -0.9751 -0.0211 28 1 5.0323 -2.3471 -0.0092 29 1 4.1287 -3.8426 -1.9797 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000587646464.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:18 Heat of formation + Delta-G solvation = 67.249932 kcal Electronic energy + Delta-G solvation = -17048.351746 eV Core-core repulsion = 14133.921864 eV Total energy + Delta-G solvation = -2914.429882 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.41002 -38.42546 -36.02457 -34.03673 -33.74401 -31.18605 -30.53678 -29.19460 -27.56025 -25.61884 -23.81655 -21.85203 -20.62209 -19.60420 -18.04601 -17.37790 -16.77994 -15.79899 -15.31021 -15.27605 -15.15911 -13.90392 -13.72127 -13.43134 -13.03706 -12.48961 -12.27946 -12.07342 -11.70417 -11.41989 -11.20035 -10.89481 -10.88074 -10.66783 -10.49559 -10.43084 -10.12288 -9.99469 -9.38942 -8.88392 -7.64481 -7.20644 -6.84322 -4.24213 0.00884 1.86651 1.89327 2.20381 2.82718 2.94769 2.96437 3.56687 3.75634 3.95472 4.36303 4.92990 5.26646 5.44082 5.69222 5.77209 5.81102 5.93172 6.13421 6.22395 6.25886 6.47189 6.62157 6.68493 6.73898 6.81034 7.12507 7.34748 7.52812 7.58299 7.87766 8.15331 8.36268 8.56001 8.78831 9.90898 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.023405 B = 0.007922 C = 0.006054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.062123 B = 3533.612886 C = 4624.007147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C -0.105 4.105 3 N -0.556 5.556 4 H 0.398 0.602 5 C 0.069 3.931 6 C -0.065 4.065 7 C 0.001 3.999 8 N 0.007 4.993 9 O -0.224 6.224 10 O -0.210 6.210 11 C -0.156 4.156 12 C -0.004 4.004 13 C -0.074 4.074 14 C 0.072 3.928 15 C -0.464 4.464 16 H 0.085 0.915 17 C 0.080 3.920 18 N -0.771 5.771 19 Si 0.911 3.089 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.260 1.260 23 H 0.048 0.952 24 H 0.042 0.958 25 H 0.072 0.928 26 H 0.132 0.868 27 H 0.133 0.867 28 H 0.140 0.860 29 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.723 0.737 1.504 4.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.213 4.213 3 N -0.155 5.155 4 H 0.233 0.767 5 C -0.042 4.042 6 C -0.088 4.088 7 C -0.088 4.088 8 N 0.473 4.527 9 O -0.407 6.407 10 O -0.396 6.396 11 C -0.178 4.178 12 C -0.024 4.024 13 C -0.083 4.083 14 C 0.067 3.933 15 C -0.493 4.493 16 H 0.103 0.897 17 C -0.145 4.145 18 N -0.394 5.394 19 Si 0.735 3.265 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.185 1.185 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.091 0.909 26 H 0.150 0.850 27 H 0.151 0.849 28 H 0.157 0.843 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.098 0.441 1.379 4.346 hybrid contribution 0.265 -0.001 -0.043 0.269 sum -3.833 0.440 1.337 4.083 Atomic orbital electron populations 1.19867 0.89094 1.01115 1.00685 1.20531 0.92344 0.85569 1.22838 1.40344 1.02998 1.07785 1.64377 0.76740 1.17655 0.83941 0.94312 1.08310 1.19464 0.88363 0.99616 1.01356 1.19589 0.80743 0.90119 1.18384 1.50487 1.04381 1.02833 0.95016 1.96183 1.95839 0.90472 1.58242 1.96196 1.11648 1.74205 1.57595 1.20439 1.00190 0.89654 1.07562 1.20551 0.88932 0.99964 0.92928 1.19538 0.95098 0.90647 1.03011 1.17770 0.86752 0.91743 0.97052 1.19402 1.06528 0.89550 1.33870 0.89687 1.27322 0.92546 1.01756 0.92859 1.69073 1.16809 1.37764 1.15769 0.86316 0.79505 0.80478 0.80172 1.18750 1.20200 1.18461 0.93316 0.93903 0.90946 0.85004 0.84911 0.84257 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.81 10.20 36.00 0.37 -0.44 15 2 C -0.11 -2.11 7.23 -80.92 -0.59 -2.69 15 3 N -0.56 -10.22 5.86 -6.08 -0.04 -10.26 15 4 H 0.40 5.80 8.96 -40.82 -0.37 5.43 15 5 C 0.07 1.43 7.22 -83.81 -0.61 0.82 15 6 C -0.07 -1.28 9.59 -39.38 -0.38 -1.66 15 7 C 0.00 0.02 6.88 -79.92 -0.55 -0.53 15 8 N 0.01 0.15 4.98 33.98 0.17 0.32 15 9 O -0.22 -4.84 19.12 -31.57 -0.60 -5.44 15 10 O -0.21 -4.61 19.12 -31.57 -0.60 -5.21 15 11 C -0.16 -3.21 9.57 -39.53 -0.38 -3.59 15 12 C 0.00 -0.09 8.75 -39.37 -0.34 -0.44 15 13 C -0.07 -1.69 5.82 -104.90 -0.61 -2.30 15 14 C 0.07 1.67 5.78 -104.73 -0.61 1.06 15 15 C -0.46 -10.72 9.23 -36.08 -0.33 -11.05 15 16 H 0.09 1.88 7.99 -52.48 -0.42 1.46 15 17 C 0.08 1.74 5.09 -15.14 -0.08 1.67 15 18 N -0.77 -17.47 10.23 56.00 0.57 -16.89 15 19 Si 0.91 16.55 29.68 -169.99 -5.05 11.50 15 20 H -0.26 -4.74 7.11 56.52 0.40 -4.34 15 21 H -0.28 -4.95 7.11 56.52 0.40 -4.55 15 22 H -0.26 -4.75 7.11 56.52 0.40 -4.35 15 23 H 0.05 0.73 8.14 -51.93 -0.42 0.30 15 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 15 25 H 0.07 1.20 8.07 -51.93 -0.42 0.78 15 26 H 0.13 2.31 7.55 -52.49 -0.40 1.91 15 27 H 0.13 2.53 7.55 -52.49 -0.40 2.13 15 28 H 0.14 3.02 6.20 -52.49 -0.33 2.69 15 29 H 0.29 6.00 8.27 -40.82 -0.34 5.66 15 LS Contribution 266.56 15.07 4.02 4.02 Total: -1.00 -25.90 266.56 -7.93 -33.83 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -2.30 Total: 7.29 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -4.10 Total: -19.15 kcal Atomic # 7 Polarization: -27.54 SS G_CDS: 0.71 Total: -26.83 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -1.21 Total: -10.65 kcal Atomic # 14 Polarization: 16.55 SS G_CDS: -5.05 Total: 11.50 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -25.90 -7.93 -33.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000587646464.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.076 kcal (2) G-P(sol) polarization free energy of solvation -25.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds