Wall clock time and date at job start Mon Mar 30 2020 07:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.33205 * 125.36898 * 2 1 4 4 H 0.97000 * 124.39805 * 0.02562 * 3 2 1 5 5 C 1.38556 * 111.20211 * 180.26114 * 3 2 1 6 6 C 1.38984 * 132.69018 * 179.73757 * 5 3 2 7 7 C 1.38045 * 119.99822 * 180.02562 * 6 5 3 8 8 N 1.48013 * 119.69559 * 179.97438 * 7 6 5 9 9 O 1.31698 * 119.99839 * 0.02562 * 8 7 6 10 10 O 1.31700 * 119.99994 * 180.02562 * 8 7 6 11 11 C 1.38515 * 120.61129 * 0.02562 * 7 6 5 12 12 C 1.38094 * 120.16909 * 359.97438 * 11 7 6 13 13 C 1.38950 * 119.67653 * 0.03906 * 12 11 7 14 14 C 1.41086 * 125.36773 * 179.81182 * 2 1 3 15 15 C 1.38487 * 127.16382 * 0.02562 * 14 2 1 16 16 H 1.08007 * 120.00323 * 328.93573 * 15 14 2 17 17 C 1.46694 * 120.00255 * 149.20594 * 15 14 2 18 18 N 1.29464 * 119.99798 * 342.03616 * 17 15 14 19 19 Si 1.86800 * 120.00354 * 162.03164 * 17 15 14 20 20 H 1.48498 * 109.47155 * 60.00109 * 19 17 15 21 21 H 1.48499 * 109.47205 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46924 * 300.00151 * 19 17 15 23 23 H 1.09004 * 109.47113 * 265.03402 * 1 2 3 24 24 H 1.08999 * 109.47422 * 25.03627 * 1 2 3 25 25 H 1.09000 * 109.47243 * 145.03602 * 1 2 3 26 26 H 1.07998 * 119.99984 * 0.02562 * 6 5 3 27 27 H 1.07995 * 119.91874 * 180.02562 * 11 7 6 28 28 H 1.07993 * 120.15904 * 180.02562 * 12 11 7 29 29 H 0.96999 * 120.00125 * 185.10292 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2780 1.0862 0.0000 4 1 1.9425 1.9964 0.0004 5 6 3.6214 0.7471 -0.0059 6 6 4.7851 1.5070 -0.0129 7 6 6.0166 0.8833 -0.0183 8 7 7.2516 1.6991 -0.0263 9 8 7.1724 3.0137 -0.0277 10 8 8.4297 1.1103 -0.0319 11 6 6.1073 -0.4989 -0.0173 12 6 4.9614 -1.2695 -0.0104 13 6 3.7168 -0.6517 -0.0052 14 6 2.3236 -1.1505 0.0038 15 6 1.9078 -2.4715 0.0076 16 1 0.9813 -2.7447 0.4907 17 6 2.7288 -3.5007 -0.6393 18 7 3.6367 -3.1599 -1.4971 19 14 2.4645 -5.3030 -0.2255 20 1 1.0715 -5.6897 -0.5648 21 1 3.4141 -6.1349 -1.0075 22 1 2.6982 -5.5172 1.2253 23 1 -0.3633 -0.0890 1.0238 24 1 -0.3634 0.9311 -0.4349 25 1 -0.3634 -0.8422 -0.5889 26 1 4.7258 2.5853 -0.0141 27 1 7.0765 -0.9751 -0.0211 28 1 5.0323 -2.3471 -0.0092 29 1 4.1287 -3.8426 -1.9797 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000587646464.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:18 Heat of formation + Delta-G solvation = 54.429810 kcal Electronic energy + Delta-G solvation = -17048.907668 eV Core-core repulsion = 14133.921864 eV Total energy + Delta-G solvation = -2914.985804 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.01986 -40.07595 -37.64377 -35.65669 -35.41463 -32.80036 -32.07369 -30.82457 -29.07451 -27.26779 -25.43741 -23.44640 -22.25898 -21.21509 -19.66904 -19.04977 -18.43092 -17.38048 -16.97325 -16.85114 -16.72490 -15.46598 -15.33144 -14.97855 -14.60537 -14.03380 -13.66794 -13.55727 -13.24782 -12.87365 -12.72632 -12.45975 -12.42284 -12.29072 -12.14303 -11.93544 -11.82604 -11.61876 -10.99399 -10.52589 -9.24806 -8.83557 -8.45781 -5.89669 -1.67605 0.23578 0.25200 0.57182 1.36209 1.47419 1.54221 1.98732 2.25059 2.41473 2.72893 3.26071 3.71684 3.88259 4.14202 4.20882 4.22513 4.49948 4.65635 4.71194 4.89726 4.96760 5.08775 5.12754 5.17003 5.30052 5.52136 5.72409 5.86520 5.94379 6.21070 6.49767 6.78334 6.98537 7.15125 8.32458 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.023405 B = 0.007922 C = 0.006054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.062123 B = 3533.612886 C = 4624.007147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C -0.070 4.070 3 N -0.537 5.537 4 H 0.421 0.579 5 C 0.053 3.947 6 C -0.038 4.038 7 C -0.017 4.017 8 N 0.010 4.990 9 O -0.224 6.224 10 O -0.238 6.238 11 C -0.157 4.157 12 C -0.014 4.014 13 C -0.108 4.108 14 C 0.024 3.976 15 C -0.495 4.495 16 H 0.085 0.915 17 C 0.046 3.954 18 N -0.801 5.801 19 Si 0.973 3.027 20 H -0.258 1.258 21 H -0.274 1.274 22 H -0.263 1.263 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.158 0.842 27 H 0.140 0.860 28 H 0.131 0.869 29 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.545 1.557 1.717 6.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.181 4.181 3 N -0.137 5.137 4 H 0.259 0.741 5 C -0.058 4.058 6 C -0.061 4.061 7 C -0.108 4.108 8 N 0.471 4.529 9 O -0.408 6.408 10 O -0.417 6.417 11 C -0.179 4.179 12 C -0.033 4.033 13 C -0.117 4.117 14 C 0.019 3.981 15 C -0.524 4.524 16 H 0.103 0.897 17 C -0.175 4.175 18 N -0.425 5.425 19 Si 0.795 3.205 20 H -0.182 1.182 21 H -0.198 1.198 22 H -0.187 1.187 23 H 0.087 0.913 24 H 0.095 0.905 25 H 0.087 0.913 26 H 0.176 0.824 27 H 0.158 0.842 28 H 0.149 0.851 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.853 1.295 1.593 6.203 hybrid contribution 0.567 -0.127 -0.104 0.591 sum -5.286 1.168 1.489 5.614 Atomic orbital electron populations 1.20034 0.85958 1.02799 1.02197 1.21285 0.94253 0.85237 1.17322 1.40376 1.02148 1.08784 1.62401 0.74056 1.17678 0.84960 0.93708 1.09501 1.19671 0.87460 1.00739 0.98195 1.19703 0.80937 0.90228 1.19884 1.50525 1.04504 1.02786 0.95089 1.96156 1.95833 0.90666 1.58133 1.96194 1.11930 1.74226 1.59389 1.20463 1.00187 0.89845 1.07427 1.20483 0.89302 0.99686 0.93876 1.19762 0.95332 0.91960 1.04684 1.18211 0.87710 0.92912 0.99273 1.19602 1.07303 0.90444 1.35076 0.89721 1.27957 0.92215 1.04968 0.92381 1.69117 1.17754 1.38923 1.16740 0.85380 0.79466 0.76142 0.79510 1.18247 1.19831 1.18746 0.91309 0.90536 0.91326 0.82424 0.84240 0.85127 0.89455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.49 10.20 71.23 0.73 -0.76 15 2 C -0.07 -2.63 7.23 43.05 0.31 -2.31 15 3 N -0.54 -18.06 5.86 -173.15 -1.02 -19.08 15 4 H 0.42 10.42 8.96 -92.71 -0.83 9.59 15 5 C 0.05 2.09 7.22 38.74 0.28 2.37 15 6 C -0.04 -1.43 9.59 22.40 0.21 -1.22 15 7 C -0.02 -0.70 6.88 36.40 0.25 -0.45 15 8 N 0.01 0.44 4.98 -46.42 -0.23 0.21 15 9 O -0.22 -9.38 19.12 3.52 0.07 -9.32 15 10 O -0.24 -10.53 19.12 3.51 0.07 -10.47 15 11 C -0.16 -6.54 9.57 22.30 0.21 -6.33 15 12 C -0.01 -0.62 8.75 22.41 0.20 -0.42 15 13 C -0.11 -4.91 5.82 -20.04 -0.12 -5.03 15 14 C 0.02 1.10 5.78 -19.93 -0.12 0.99 15 15 C -0.49 -22.90 9.23 24.54 0.23 -22.68 15 16 H 0.08 3.74 7.99 -2.91 -0.02 3.72 15 17 C 0.05 2.03 5.09 87.25 0.44 2.47 15 18 N -0.80 -37.01 10.23 23.25 0.24 -36.77 15 19 Si 0.97 34.05 29.68 68.60 2.04 36.08 15 20 H -0.26 -8.73 7.11 99.48 0.71 -8.03 15 21 H -0.27 -9.29 7.11 99.48 0.71 -8.58 15 22 H -0.26 -9.20 7.11 99.48 0.71 -8.49 15 23 H 0.07 1.76 8.14 -2.38 -0.02 1.75 15 24 H 0.08 1.69 8.14 -2.39 -0.02 1.67 15 25 H 0.07 2.07 8.07 -2.39 -0.02 2.05 15 26 H 0.16 5.01 7.55 -2.91 -0.02 4.98 15 27 H 0.14 5.46 7.55 -2.91 -0.02 5.43 15 28 H 0.13 5.90 6.20 -2.91 -0.02 5.88 15 29 H 0.29 12.43 8.27 -92.71 -0.77 11.66 15 Total: -1.00 -55.24 266.56 4.17 -51.06 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.38 Total: 21.64 kcal Atomic # 6 Polarization: -36.00 SS G_CDS: 2.63 Total: -33.37 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: -1.01 Total: -55.63 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: 0.13 Total: -19.78 kcal Atomic # 14 Polarization: 34.05 SS G_CDS: 2.04 Total: 36.08 kcal Total: -55.24 4.17 -51.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000587646464.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.494 kcal (2) G-P(sol) polarization free energy of solvation -55.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds