Wall clock time and date at job start Mon Mar 30 2020 07:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40528 * 126.31299 * 2 1 4 4 C 1.38454 * 125.82799 * 359.97312 * 3 2 1 5 5 H 1.08003 * 119.99829 * 15.53025 * 4 3 2 6 6 C 1.46549 * 120.00157 * 195.52597 * 4 3 2 7 7 N 1.29541 * 120.00361 * 170.08113 * 6 4 3 8 8 Si 1.86806 * 119.99837 * 350.07382 * 6 4 3 9 9 H 1.48505 * 109.46842 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47268 * 300.00281 * 8 6 4 11 11 H 1.48494 * 109.47153 * 60.00500 * 8 6 4 12 12 N 1.38533 * 108.33896 * 179.71730 * 3 2 1 13 13 H 0.96999 * 125.59836 * 180.24196 * 12 3 2 14 14 C 1.37660 * 108.80014 * 0.25895 * 12 3 2 15 15 C 1.39051 * 132.65198 * 179.97438 * 14 12 3 16 16 C 1.37856 * 119.92820 * 179.97438 * 15 14 12 17 17 N 1.48013 * 119.61078 * 179.97438 * 16 15 14 18 18 O 1.31698 * 119.99906 * 0.02562 * 17 16 15 19 19 O 1.31697 * 120.00327 * 180.02562 * 17 16 15 20 20 C 1.39156 * 120.78199 * 0.02946 * 16 15 14 21 21 C 1.36216 * 120.64047 * 359.97310 * 20 16 15 22 22 C 1.40186 * 126.31858 * 180.16480 * 2 1 3 23 23 H 1.08999 * 109.47428 * 90.03026 * 1 2 3 24 24 H 1.09001 * 109.46650 * 210.01905 * 1 2 3 25 25 H 1.08998 * 109.47381 * 330.02397 * 1 2 3 26 26 H 0.97008 * 119.99667 * 354.71763 * 7 6 4 27 27 H 1.08004 * 120.03582 * 0.03078 * 15 14 12 28 28 H 1.07994 * 119.67237 * 179.97438 * 20 16 15 29 29 H 1.08004 * 120.10697 * 180.02562 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3391 1.1324 0.0000 4 6 1.9145 2.4502 -0.0005 5 1 0.8911 2.6878 0.2495 6 6 2.8538 3.5226 -0.3402 7 7 2.4196 4.7283 -0.5291 8 14 4.6775 3.1508 -0.5005 9 1 5.4079 4.3964 -0.8477 10 1 5.1897 2.6201 0.7884 11 1 4.8847 2.1407 -1.5691 12 7 3.6569 0.7049 0.0065 13 1 4.4373 1.2809 0.0112 14 6 3.6767 -0.6716 0.0047 15 6 4.7129 -1.5989 0.0085 16 6 4.4287 -2.9478 0.0058 17 7 5.5371 -3.9287 0.0093 18 8 6.7861 -3.5110 0.0156 19 8 5.2745 -5.2192 0.0063 20 6 3.1121 -3.3982 -0.0014 21 6 2.0759 -2.5140 -0.0053 22 6 2.3372 -1.1295 -0.0032 23 1 -0.3634 -0.0005 -1.0276 24 1 -0.3633 -0.8898 0.5141 25 1 -0.3634 0.8902 0.5134 26 1 1.4662 4.9072 -0.5216 27 1 5.7392 -1.2626 0.0145 28 1 2.9099 -4.4591 -0.0038 29 1 1.0573 -2.8731 -0.0104 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000587647483.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:14 Heat of formation + Delta-G solvation = 53.994400 kcal Electronic energy + Delta-G solvation = -16956.937104 eV Core-core repulsion = 14041.932419 eV Total energy + Delta-G solvation = -2915.004685 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -40.72025 -38.20032 -36.13605 -34.30014 -33.43567 -32.63045 -30.16647 -29.66327 -27.16554 -26.32003 -23.93725 -21.76665 -21.18046 -19.39911 -18.66035 -18.13684 -17.07324 -16.29254 -15.83205 -15.03138 -14.52027 -14.17911 -13.96091 -13.84264 -13.32976 -12.88278 -12.36973 -12.30091 -11.99987 -11.89820 -11.19109 -11.02150 -10.81870 -10.64356 -10.42987 -10.33143 -10.22096 -10.14429 -9.87719 -9.22186 -8.40729 -8.08918 -7.39340 -5.20345 0.17747 1.74614 2.17421 2.21827 2.39160 2.45882 2.60076 3.09620 3.14340 3.70738 4.13927 4.34052 5.10536 5.40511 5.65050 5.68961 5.73322 5.85231 6.02041 6.30549 6.32816 6.36692 6.44382 6.50899 6.56441 6.69557 6.75441 6.89650 7.06877 7.27733 7.40186 7.62256 7.80038 7.84976 8.15794 8.90720 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.028398 B = 0.007391 C = 0.005896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.739957 B = 3787.660581 C = 4747.619092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C -0.307 4.307 3 C 0.282 3.718 4 C -0.443 4.443 5 H 0.115 0.885 6 C 0.035 3.965 7 N -0.733 5.733 8 Si 1.038 2.962 9 H -0.256 1.256 10 H -0.256 1.256 11 H -0.251 1.251 12 N -0.637 5.637 13 H 0.393 0.607 14 C 0.041 3.959 15 C -0.046 4.046 16 C -0.083 4.083 17 N 0.030 4.970 18 O -0.266 6.266 19 O -0.261 6.261 20 C -0.050 4.050 21 C -0.154 4.154 22 C 0.019 3.981 23 H 0.043 0.957 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.307 0.693 27 H 0.130 0.870 28 H 0.132 0.868 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.858 1.218 0.128 3.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.310 4.310 3 C 0.175 3.825 4 C -0.474 4.474 5 H 0.133 0.867 6 C -0.197 4.197 7 N -0.350 5.350 8 Si 0.862 3.138 9 H -0.181 1.181 10 H -0.183 1.183 11 H -0.177 1.177 12 N -0.260 5.260 13 H 0.239 0.761 14 C -0.062 4.062 15 C -0.070 4.070 16 C -0.179 4.179 17 N 0.476 4.524 18 O -0.436 6.436 19 O -0.432 6.432 20 C -0.070 4.070 21 C -0.175 4.175 22 C 0.014 3.986 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.121 0.879 27 H 0.148 0.852 28 H 0.150 0.850 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.683 2.302 -0.144 2.855 hybrid contribution -0.765 -0.533 0.283 0.974 sum -2.448 1.769 0.139 3.023 Atomic orbital electron populations 1.19704 0.90431 1.00383 0.99868 1.19504 0.94548 0.89461 1.27482 1.18135 0.80665 0.93752 0.89941 1.21610 1.00591 0.89144 1.36051 0.86679 1.28929 1.08332 0.91520 0.90945 1.69999 1.21323 1.20793 1.22903 0.84111 0.71675 0.78540 0.79504 1.18055 1.18291 1.17700 1.42910 1.07152 1.04055 1.71873 0.76108 1.17724 0.94290 0.83615 1.10532 1.19337 0.98346 0.89437 0.99851 1.19180 0.84542 0.86319 1.27834 1.50122 1.03417 1.03081 0.95808 1.96159 1.01293 1.84993 1.61202 1.96151 1.91694 0.94407 1.60984 1.20097 0.89303 1.00479 0.97158 1.19972 0.97973 0.90436 1.09092 1.18285 0.91811 0.93192 0.95274 0.93779 0.93397 0.93109 0.87933 0.85203 0.85024 0.85497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.77 10.17 36.00 0.37 -0.40 15 2 C -0.31 -6.09 6.29 -103.03 -0.65 -6.74 15 3 C 0.28 5.81 6.45 -83.89 -0.54 5.27 15 4 C -0.44 -8.91 9.72 -36.15 -0.35 -9.26 15 5 H 0.12 2.28 7.40 -52.48 -0.39 1.89 15 6 C 0.04 0.68 5.69 -15.17 -0.09 0.60 15 7 N -0.73 -14.42 13.58 55.99 0.76 -13.66 15 8 Si 1.04 17.34 25.06 -169.99 -4.26 13.08 15 9 H -0.26 -4.12 7.11 56.52 0.40 -3.72 15 10 H -0.26 -4.03 6.78 56.52 0.38 -3.65 15 11 H -0.25 -4.18 6.92 56.52 0.39 -3.79 15 12 N -0.64 -12.88 5.14 -8.22 -0.04 -12.93 15 13 H 0.39 7.30 2.94 -40.82 -0.12 7.18 15 14 C 0.04 0.85 7.23 -83.68 -0.61 0.24 15 15 C -0.05 -0.95 9.59 -39.42 -0.38 -1.33 15 16 C -0.08 -1.75 6.89 -79.75 -0.55 -2.30 15 17 N 0.03 0.68 4.98 34.06 0.17 0.85 15 18 O -0.27 -6.26 19.11 -31.57 -0.60 -6.86 15 19 O -0.26 -6.03 19.12 -31.57 -0.60 -6.63 15 20 C -0.05 -0.94 9.49 -39.97 -0.38 -1.32 15 21 C -0.15 -2.79 10.08 -39.30 -0.40 -3.19 15 22 C 0.02 0.38 6.08 -106.89 -0.65 -0.27 15 23 H 0.04 0.69 8.14 -51.93 -0.42 0.27 15 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 15 25 H 0.05 0.80 7.43 -51.93 -0.39 0.42 15 26 H 0.31 5.69 8.74 -40.82 -0.36 5.33 15 27 H 0.13 2.50 7.54 -52.48 -0.40 2.10 15 28 H 0.13 2.26 7.54 -52.49 -0.40 1.87 15 29 H 0.13 1.94 8.06 -52.48 -0.42 1.51 15 LS Contribution 261.40 15.07 3.94 3.94 Total: -1.00 -24.23 261.40 -6.99 -31.22 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -2.14 Total: 9.69 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -4.22 Total: -18.70 kcal Atomic # 7 Polarization: -26.62 SS G_CDS: 0.89 Total: -25.73 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -1.21 Total: -13.50 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -4.26 Total: 13.08 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -24.23 -6.99 -31.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000587647483.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.213 kcal (2) G-P(sol) polarization free energy of solvation -24.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds