Wall clock time and date at job start Mon Mar 30 2020 07:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40528 * 126.31299 * 2 1 4 4 C 1.38454 * 125.82799 * 359.97312 * 3 2 1 5 5 H 1.08003 * 119.99829 * 15.53025 * 4 3 2 6 6 C 1.46549 * 120.00157 * 195.52597 * 4 3 2 7 7 N 1.29541 * 120.00361 * 170.08113 * 6 4 3 8 8 Si 1.86806 * 119.99837 * 350.07382 * 6 4 3 9 9 H 1.48505 * 109.46842 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47268 * 300.00281 * 8 6 4 11 11 H 1.48494 * 109.47153 * 60.00500 * 8 6 4 12 12 N 1.38533 * 108.33896 * 179.71730 * 3 2 1 13 13 H 0.96999 * 125.59836 * 180.24196 * 12 3 2 14 14 C 1.37660 * 108.80014 * 0.25895 * 12 3 2 15 15 C 1.39051 * 132.65198 * 179.97438 * 14 12 3 16 16 C 1.37856 * 119.92820 * 179.97438 * 15 14 12 17 17 N 1.48013 * 119.61078 * 179.97438 * 16 15 14 18 18 O 1.31698 * 119.99906 * 0.02562 * 17 16 15 19 19 O 1.31697 * 120.00327 * 180.02562 * 17 16 15 20 20 C 1.39156 * 120.78199 * 0.02946 * 16 15 14 21 21 C 1.36216 * 120.64047 * 359.97310 * 20 16 15 22 22 C 1.40186 * 126.31858 * 180.16480 * 2 1 3 23 23 H 1.08999 * 109.47428 * 90.03026 * 1 2 3 24 24 H 1.09001 * 109.46650 * 210.01905 * 1 2 3 25 25 H 1.08998 * 109.47381 * 330.02397 * 1 2 3 26 26 H 0.97008 * 119.99667 * 354.71763 * 7 6 4 27 27 H 1.08004 * 120.03582 * 0.03078 * 15 14 12 28 28 H 1.07994 * 119.67237 * 179.97438 * 20 16 15 29 29 H 1.08004 * 120.10697 * 180.02562 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3391 1.1324 0.0000 4 6 1.9145 2.4502 -0.0005 5 1 0.8911 2.6878 0.2495 6 6 2.8538 3.5226 -0.3402 7 7 2.4196 4.7283 -0.5291 8 14 4.6775 3.1508 -0.5005 9 1 5.4079 4.3964 -0.8477 10 1 5.1897 2.6201 0.7884 11 1 4.8847 2.1407 -1.5691 12 7 3.6569 0.7049 0.0065 13 1 4.4373 1.2809 0.0112 14 6 3.6767 -0.6716 0.0047 15 6 4.7129 -1.5989 0.0085 16 6 4.4287 -2.9478 0.0058 17 7 5.5371 -3.9287 0.0093 18 8 6.7861 -3.5110 0.0156 19 8 5.2745 -5.2192 0.0063 20 6 3.1121 -3.3982 -0.0014 21 6 2.0759 -2.5140 -0.0053 22 6 2.3372 -1.1295 -0.0032 23 1 -0.3634 -0.0005 -1.0276 24 1 -0.3633 -0.8898 0.5141 25 1 -0.3634 0.8902 0.5134 26 1 1.4662 4.9072 -0.5216 27 1 5.7392 -1.2626 0.0145 28 1 2.9099 -4.4591 -0.0038 29 1 1.0573 -2.8731 -0.0104 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000587647483.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:13 Heat of formation + Delta-G solvation = 42.421202 kcal Electronic energy + Delta-G solvation = -16957.438955 eV Core-core repulsion = 14041.932419 eV Total energy + Delta-G solvation = -2915.506536 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.28132 -39.79065 -37.68930 -35.87016 -35.07717 -34.14820 -31.74374 -31.15266 -28.73274 -27.82133 -25.49593 -23.29958 -22.74415 -20.94452 -20.19957 -19.69196 -18.69020 -17.85950 -17.35907 -16.65947 -15.98824 -15.71072 -15.47288 -15.35727 -14.77341 -14.40768 -13.79712 -13.61116 -13.44346 -13.30583 -12.64934 -12.52527 -12.30082 -12.08729 -12.03310 -11.84234 -11.77325 -11.62644 -11.62275 -10.74614 -9.98125 -9.67238 -8.93718 -6.76861 -1.55796 0.21221 0.64744 0.65527 0.99912 1.09626 1.27131 1.62281 1.75585 2.17976 2.56677 2.80161 3.61397 3.92356 4.13005 4.17689 4.25177 4.34923 4.54022 4.79170 4.91932 4.92831 5.03113 5.07692 5.14067 5.24299 5.26400 5.34327 5.55074 5.77742 5.82105 6.06500 6.17437 6.25035 6.58713 7.36127 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.028398 B = 0.007391 C = 0.005896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.739957 B = 3787.660581 C = 4747.619092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C -0.292 4.292 3 C 0.262 3.738 4 C -0.432 4.432 5 H 0.120 0.880 6 C 0.017 3.983 7 N -0.734 5.734 8 Si 1.050 2.950 9 H -0.244 1.244 10 H -0.243 1.243 11 H -0.252 1.252 12 N -0.641 5.641 13 H 0.398 0.602 14 C 0.033 3.967 15 C -0.056 4.056 16 C -0.092 4.092 17 N 0.035 4.965 18 O -0.323 6.323 19 O -0.298 6.298 20 C -0.054 4.054 21 C -0.137 4.137 22 C -0.001 4.001 23 H 0.056 0.944 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.312 0.688 27 H 0.131 0.869 28 H 0.147 0.853 29 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.155 2.765 0.133 5.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.295 4.295 3 C 0.154 3.846 4 C -0.463 4.463 5 H 0.137 0.863 6 C -0.214 4.214 7 N -0.352 5.352 8 Si 0.871 3.129 9 H -0.168 1.168 10 H -0.169 1.169 11 H -0.178 1.178 12 N -0.266 5.266 13 H 0.245 0.755 14 C -0.070 4.070 15 C -0.079 4.079 16 C -0.192 4.192 17 N 0.463 4.537 18 O -0.479 6.479 19 O -0.460 6.460 20 C -0.074 4.074 21 C -0.157 4.157 22 C -0.005 4.005 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.126 0.874 27 H 0.149 0.851 28 H 0.165 0.835 29 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.863 3.761 -0.132 5.393 hybrid contribution -0.493 -0.471 0.265 0.732 sum -4.356 3.290 0.133 5.461 Atomic orbital electron populations 1.19848 0.87925 1.01845 1.01100 1.20110 0.96325 0.88965 1.24137 1.18422 0.81143 0.94281 0.90712 1.21855 1.00973 0.89304 1.34127 0.86265 1.29571 1.10067 0.91156 0.90613 1.70021 1.21919 1.20921 1.22315 0.83951 0.69738 0.79064 0.80182 1.16845 1.16896 1.17797 1.43015 1.07393 1.04041 1.72127 0.75497 1.17910 0.94800 0.83871 1.10390 1.19378 0.98618 0.89471 1.00481 1.19518 0.84912 0.86296 1.28454 1.50238 1.03528 1.03120 0.96856 1.96122 1.02256 1.84963 1.64584 1.96101 1.91633 0.95143 1.63130 1.20330 0.88486 1.01567 0.96987 1.20298 0.99338 0.89247 1.06850 1.18628 0.91545 0.94335 0.95996 0.92501 0.91241 0.92459 0.87424 0.85097 0.83509 0.81926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.43 10.17 71.23 0.72 -0.70 15 2 C -0.29 -10.54 6.29 -18.83 -0.12 -10.66 15 3 C 0.26 10.02 6.45 38.69 0.25 10.27 15 4 C -0.43 -16.05 9.72 24.49 0.24 -15.81 15 5 H 0.12 4.31 7.40 -2.91 -0.02 4.28 15 6 C 0.02 0.63 5.69 87.20 0.50 1.13 15 7 N -0.73 -26.92 13.58 23.22 0.32 -26.60 15 8 Si 1.05 32.46 25.06 68.60 1.72 34.18 15 9 H -0.24 -7.16 7.11 99.48 0.71 -6.45 15 10 H -0.24 -7.03 6.78 99.48 0.67 -6.35 15 11 H -0.25 -7.90 6.92 99.48 0.69 -7.21 15 12 N -0.64 -24.64 5.14 -179.93 -0.93 -25.56 15 13 H 0.40 14.03 2.94 -92.71 -0.27 13.76 15 14 C 0.03 1.32 7.23 39.24 0.28 1.61 15 15 C -0.06 -2.29 9.59 22.37 0.21 -2.07 15 16 C -0.09 -3.89 6.89 36.51 0.25 -3.64 15 17 N 0.03 1.66 4.98 -46.15 -0.23 1.43 15 18 O -0.32 -16.15 19.11 3.52 0.07 -16.08 15 19 O -0.30 -14.36 19.12 3.52 0.07 -14.29 15 20 C -0.05 -1.94 9.49 22.02 0.21 -1.73 15 21 C -0.14 -4.50 10.08 22.45 0.23 -4.28 15 22 C 0.00 -0.02 6.08 -21.34 -0.13 -0.15 15 23 H 0.06 1.51 8.14 -2.39 -0.02 1.49 15 24 H 0.07 1.70 8.14 -2.39 -0.02 1.68 15 25 H 0.06 1.56 7.43 -2.39 -0.02 1.55 15 26 H 0.31 10.72 8.74 -92.70 -0.81 9.91 15 27 H 0.13 5.18 7.54 -2.91 -0.02 5.16 15 28 H 0.15 4.82 7.54 -2.91 -0.02 4.80 15 29 H 0.16 4.14 8.06 -2.91 -0.02 4.12 15 Total: -1.00 -50.73 261.40 4.50 -46.23 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 0.84 Total: 26.74 kcal Atomic # 6 Polarization: -28.68 SS G_CDS: 2.65 Total: -26.04 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.84 Total: -50.73 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: 0.13 Total: -30.37 kcal Atomic # 14 Polarization: 32.46 SS G_CDS: 1.72 Total: 34.18 kcal Total: -50.73 4.50 -46.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000587647483.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.648 kcal (2) G-P(sol) polarization free energy of solvation -50.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds