Wall clock time and date at job start Mon Mar 30 2020 07:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00006 * 2 1 4 4 H 1.48504 * 109.47047 * 239.99461 * 3 2 1 5 5 H 1.48495 * 109.47359 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47060 * 119.99949 * 3 2 1 7 7 C 1.37879 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99922 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99808 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47116 * 179.97438 * 9 7 2 11 11 S 1.81395 * 109.47512 * 179.97438 * 10 9 7 12 12 O 1.42100 * 109.47129 * 296.38805 * 11 10 9 13 13 C 1.81401 * 103.00141 * 179.97438 * 11 10 9 14 14 C 1.50704 * 109.46832 * 180.02562 * 13 11 10 15 15 C 1.38476 * 122.55638 * 269.94932 * 14 13 11 16 16 C 1.33350 * 114.92610 * 180.02562 * 15 14 13 17 17 S 1.75879 * 109.62236 * 0.02562 * 16 15 14 18 18 C 1.33501 * 122.55712 * 89.98074 * 14 13 11 19 19 Cl 1.73601 * 125.20892 * 359.95122 * 18 14 13 20 20 H 0.97000 * 119.99992 * 0.02562 * 1 2 3 21 21 H 1.08996 * 109.47519 * 60.00042 * 9 7 2 22 22 H 1.09002 * 109.47287 * 299.99244 * 9 7 2 23 23 H 1.09001 * 109.47164 * 59.99536 * 10 9 7 24 24 H 1.09007 * 109.46973 * 300.00065 * 10 9 7 25 25 H 1.08998 * 109.46725 * 60.00112 * 13 11 10 26 26 H 1.08995 * 109.47003 * 299.99830 * 13 11 10 27 27 H 1.07995 * 122.53294 * 0.05348 * 15 14 13 28 28 H 1.08006 * 125.18333 * 180.26797 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 16 1.3382 -5.2331 0.0013 12 8 0.5861 -5.3452 1.2017 13 6 2.6649 -6.4702 0.0004 14 6 2.0631 -7.8520 0.0003 15 6 1.7671 -8.5359 1.1674 16 6 1.2396 -9.7478 0.9903 17 16 1.0928 -10.0823 -0.7302 18 6 1.7755 -8.5102 -1.1250 19 17 2.0355 -7.9068 -2.7318 20 1 -0.4850 0.8400 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8904 23 1 2.8719 -3.6044 0.8905 24 1 2.8718 -3.6044 -0.8895 25 1 3.2816 -6.3421 0.8900 26 1 3.2803 -6.3423 -0.8900 27 1 1.9491 -8.1191 2.1469 28 1 0.9438 -10.4196 1.7825 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594686936.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:31 Heat of formation + Delta-G solvation = -20.788843 kcal Electronic energy + Delta-G solvation = -14490.522116 eV Core-core repulsion = 11785.690343 eV Total energy + Delta-G solvation = -2704.831772 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 277.994 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.54714 -36.67641 -35.14889 -33.67249 -31.02743 -30.87258 -27.65492 -25.30374 -23.24551 -21.21524 -19.19654 -18.15634 -17.04654 -16.48515 -15.74082 -15.02312 -14.58264 -14.35579 -13.94536 -13.75641 -13.55230 -13.46775 -12.69182 -12.40848 -12.29228 -11.72495 -11.60294 -11.32890 -11.24696 -10.96019 -10.83410 -10.75564 -10.18160 -10.13548 -9.56362 -9.26697 -8.76832 -8.46289 -8.41224 -7.64878 -6.04298 -4.08703 0.60505 0.96838 1.62020 1.81633 2.12986 2.62640 3.16255 3.30710 3.35461 3.37633 4.24030 4.42960 4.63264 5.01324 5.05347 5.29354 5.30519 5.66923 5.77740 5.93976 6.03049 6.13779 6.15151 6.79841 7.49300 7.60576 7.90502 8.31680 8.95682 9.55280 11.06285 Molecular weight = 277.99amu Principal moments of inertia in cm(-1) A = 0.038062 B = 0.003870 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.465186 B = 7232.481780 C = 7585.923607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.039 3.961 10 C -0.416 4.416 11 S 1.224 4.776 12 O -0.842 6.842 13 C -0.404 4.404 14 C -0.053 4.053 15 C -0.119 4.119 16 C -0.204 4.204 17 S 0.139 5.861 18 C -0.153 4.153 19 Cl -0.006 7.006 20 H 0.263 0.737 21 H 0.029 0.971 22 H 0.023 0.977 23 H 0.073 0.927 24 H 0.106 0.894 25 H 0.097 0.903 26 H 0.125 0.875 27 H 0.147 0.853 28 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.913 -20.694 -4.827 21.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.075 0.925 9 C 0.000 4.000 10 C -0.556 4.556 11 S 1.424 4.576 12 O -0.837 6.837 13 C -0.539 4.539 14 C -0.068 4.068 15 C -0.149 4.149 16 C -0.339 4.339 17 S 0.401 5.599 18 C -0.299 4.299 19 Cl 0.023 6.977 20 H 0.073 0.927 21 H 0.047 0.953 22 H 0.041 0.959 23 H 0.092 0.908 24 H 0.125 0.875 25 H 0.116 0.884 26 H 0.144 0.856 27 H 0.165 0.835 28 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 2.267 -21.957 -5.791 22.820 hybrid contribution 2.430 2.439 2.574 4.298 sum 4.697 -19.518 -3.217 20.331 Atomic orbital electron populations 1.69949 1.06047 1.26992 1.50125 1.25047 0.94922 0.99333 0.95163 0.86598 0.79545 0.82881 0.78632 1.20083 1.21149 1.20301 1.21110 0.92983 0.90396 1.51439 0.92505 1.18785 0.92954 0.90077 0.98147 1.27627 1.09652 1.12264 1.06093 1.70785 0.87280 0.86891 1.12659 1.93083 1.55906 1.83945 1.50808 1.26668 1.15017 1.03969 1.08233 1.18203 1.01127 0.96283 0.91156 1.19997 1.01390 0.94191 0.99349 1.25640 1.07930 1.01451 0.98912 1.84234 1.62249 1.13104 1.00282 1.24968 1.13912 1.00429 0.90559 1.98367 1.95046 1.86564 1.17723 0.92705 0.95303 0.95879 0.90818 0.87525 0.88435 0.85629 0.83540 0.81061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.85 13.29 55.43 0.74 -26.12 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 15 3 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 15 4 H -0.28 -6.43 7.11 56.52 0.40 -6.02 15 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 7 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 15 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 15 9 C 0.04 1.01 4.98 -27.88 -0.14 0.87 15 10 C -0.42 -8.20 5.86 37.16 0.22 -7.99 15 11 S 1.22 20.40 13.14 -107.50 -1.41 18.99 15 12 O -0.84 -18.89 18.14 -35.23 -0.64 -19.53 15 13 C -0.40 -5.31 5.93 36.01 0.21 -5.09 15 14 C -0.05 -0.68 5.07 -106.19 -0.54 -1.22 15 15 C -0.12 -1.47 9.98 -41.20 -0.41 -1.88 15 16 C -0.20 -2.05 11.22 29.02 0.33 -1.73 15 17 S 0.14 1.36 23.34 -107.50 -2.51 -1.15 15 18 C -0.15 -1.79 7.07 29.07 0.21 -1.59 15 19 Cl -0.01 -0.06 28.29 -51.86 -1.47 -1.53 15 20 H 0.26 7.45 8.31 -40.82 -0.34 7.11 15 21 H 0.03 0.74 8.14 -51.93 -0.42 0.32 15 22 H 0.02 0.67 8.14 -51.93 -0.42 0.24 15 23 H 0.07 1.49 8.14 -51.92 -0.42 1.07 15 24 H 0.11 1.80 8.14 -51.92 -0.42 1.38 15 25 H 0.10 1.28 8.13 -51.92 -0.42 0.85 15 26 H 0.13 1.37 7.45 -51.93 -0.39 0.98 15 27 H 0.15 1.80 8.06 -52.49 -0.42 1.37 15 28 H 0.17 1.25 8.06 -52.48 -0.42 0.82 15 LS Contribution 292.05 15.07 4.40 4.40 Total: -1.00 -34.48 292.05 -9.33 -43.82 By element: Atomic # 1 Polarization: -0.47 SS G_CDS: -2.89 Total: -3.36 kcal Atomic # 6 Polarization: -31.54 SS G_CDS: -0.54 Total: -32.08 kcal Atomic # 7 Polarization: -26.85 SS G_CDS: 0.74 Total: -26.12 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.64 Total: -19.53 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 21.76 SS G_CDS: -3.92 Total: 17.84 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.47 Total: -1.53 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -34.48 -9.33 -43.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594686936.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.029 kcal (2) G-P(sol) polarization free energy of solvation -34.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds