Wall clock time and date at job start Mon Mar 30 2020 07:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00006 * 2 1 4 4 H 1.48504 * 109.47047 * 239.99461 * 3 2 1 5 5 H 1.48495 * 109.47359 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47060 * 119.99949 * 3 2 1 7 7 C 1.37879 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99922 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99808 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47116 * 179.97438 * 9 7 2 11 11 S 1.81395 * 109.47512 * 179.97438 * 10 9 7 12 12 O 1.42100 * 109.47129 * 296.38805 * 11 10 9 13 13 C 1.81401 * 103.00141 * 179.97438 * 11 10 9 14 14 C 1.50704 * 109.46832 * 180.02562 * 13 11 10 15 15 C 1.38476 * 122.55638 * 269.94932 * 14 13 11 16 16 C 1.33350 * 114.92610 * 180.02562 * 15 14 13 17 17 S 1.75879 * 109.62236 * 0.02562 * 16 15 14 18 18 C 1.33501 * 122.55712 * 89.98074 * 14 13 11 19 19 Cl 1.73601 * 125.20892 * 359.95122 * 18 14 13 20 20 H 0.97000 * 119.99992 * 0.02562 * 1 2 3 21 21 H 1.08996 * 109.47519 * 60.00042 * 9 7 2 22 22 H 1.09002 * 109.47287 * 299.99244 * 9 7 2 23 23 H 1.09001 * 109.47164 * 59.99536 * 10 9 7 24 24 H 1.09007 * 109.46973 * 300.00065 * 10 9 7 25 25 H 1.08998 * 109.46725 * 60.00112 * 13 11 10 26 26 H 1.08995 * 109.47003 * 299.99830 * 13 11 10 27 27 H 1.07995 * 122.53294 * 0.05348 * 15 14 13 28 28 H 1.08006 * 125.18333 * 180.26797 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 16 1.3382 -5.2331 0.0013 12 8 0.5861 -5.3452 1.2017 13 6 2.6649 -6.4702 0.0004 14 6 2.0631 -7.8520 0.0003 15 6 1.7671 -8.5359 1.1674 16 6 1.2396 -9.7478 0.9903 17 16 1.0928 -10.0823 -0.7302 18 6 1.7755 -8.5102 -1.1250 19 17 2.0355 -7.9068 -2.7318 20 1 -0.4850 0.8400 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8904 23 1 2.8719 -3.6044 0.8905 24 1 2.8718 -3.6044 -0.8895 25 1 3.2816 -6.3421 0.8900 26 1 3.2803 -6.3423 -0.8900 27 1 1.9491 -8.1191 2.1469 28 1 0.9438 -10.4196 1.7825 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594686936.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:30 Heat of formation + Delta-G solvation = -43.672790 kcal Electronic energy + Delta-G solvation = -14491.514438 eV Core-core repulsion = 11785.690343 eV Total energy + Delta-G solvation = -2705.824095 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 277.994 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.44792 -37.53613 -36.75576 -35.73761 -32.88653 -31.97934 -28.65999 -27.30992 -24.22986 -23.08045 -20.14459 -19.06220 -18.77638 -18.23719 -16.75457 -16.54107 -16.37150 -15.86366 -15.25869 -14.79942 -14.76215 -14.53242 -14.26507 -13.83593 -13.59735 -13.36818 -12.89499 -12.70732 -12.59761 -12.57778 -12.13841 -12.01074 -11.94028 -11.70438 -11.53444 -10.98757 -10.59650 -9.66410 -9.53475 -8.99776 -8.21616 -6.35242 -0.30189 0.13171 0.53251 0.78398 1.25750 1.39579 1.42973 1.51117 1.59777 1.83217 2.39906 2.85852 3.10319 3.69230 4.02230 4.18017 4.27148 4.37232 4.46311 4.69004 4.86683 5.00049 5.12798 5.22974 5.40777 5.49455 5.75800 6.16425 6.79263 7.34091 8.89275 Molecular weight = 277.99amu Principal moments of inertia in cm(-1) A = 0.038062 B = 0.003870 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.465186 B = 7232.481780 C = 7585.923607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.003 4.003 3 Si 0.969 3.031 4 H -0.258 1.258 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.037 3.963 10 C -0.418 4.418 11 S 1.262 4.738 12 O -0.906 6.906 13 C -0.386 4.386 14 C -0.077 4.077 15 C -0.150 4.150 16 C -0.195 4.195 17 S 0.187 5.813 18 C -0.163 4.163 19 Cl 0.003 6.997 20 H 0.266 0.734 21 H 0.023 0.977 22 H -0.024 1.024 23 H 0.064 0.936 24 H 0.140 0.860 25 H 0.100 0.900 26 H 0.154 0.846 27 H 0.139 0.861 28 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.391 -21.949 -5.940 23.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.201 4.201 3 Si 0.793 3.207 4 H -0.183 1.183 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.084 0.916 9 C -0.001 4.001 10 C -0.556 4.556 11 S 1.465 4.535 12 O -0.901 6.901 13 C -0.524 4.524 14 C -0.093 4.093 15 C -0.180 4.180 16 C -0.331 4.331 17 S 0.450 5.550 18 C -0.309 4.309 19 Cl 0.032 6.968 20 H 0.074 0.926 21 H 0.041 0.959 22 H -0.006 1.006 23 H 0.083 0.917 24 H 0.158 0.842 25 H 0.118 0.882 26 H 0.172 0.828 27 H 0.157 0.843 28 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 3.737 -23.179 -6.906 24.472 hybrid contribution 1.980 2.598 2.875 4.352 sum 5.717 -20.581 -4.030 21.737 Atomic orbital electron populations 1.70095 1.07899 1.28104 1.51167 1.26062 0.95846 1.03599 0.94584 0.85441 0.78228 0.77740 0.79288 1.18261 1.20781 1.19748 1.21617 0.93703 0.91706 1.51146 0.91592 1.18638 0.93624 0.92309 0.95576 1.27539 1.08639 1.12165 1.07247 1.70012 0.87334 0.85583 1.10548 1.92981 1.59488 1.84817 1.52853 1.26401 1.13364 1.02768 1.09886 1.18224 1.02844 0.96220 0.91979 1.20072 1.03419 0.95465 0.99066 1.26040 1.05889 1.00902 1.00234 1.84126 1.60521 1.11050 0.99353 1.25216 1.13400 1.01526 0.90718 1.98372 1.94971 1.86608 1.16876 0.92558 0.95910 1.00564 0.91715 0.84213 0.88168 0.82775 0.84319 0.78313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.55 13.29 21.45 0.28 -57.27 15 2 C 0.00 -0.16 5.46 84.66 0.46 0.30 15 3 Si 0.97 44.27 29.54 68.60 2.03 46.29 15 4 H -0.26 -11.02 7.11 99.48 0.71 -10.31 15 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 15 7 C -0.54 -31.07 9.11 25.60 0.23 -30.83 15 8 H 0.07 3.55 7.74 -2.91 -0.02 3.53 15 9 C 0.04 1.97 4.98 29.85 0.15 2.12 15 10 C -0.42 -16.51 5.86 71.98 0.42 -16.09 15 11 S 1.26 42.28 13.14 -56.49 -0.74 41.54 15 12 O -0.91 -42.10 18.14 -148.98 -2.70 -44.80 15 13 C -0.39 -9.57 5.93 71.24 0.42 -9.15 15 14 C -0.08 -1.88 5.07 -20.88 -0.11 -1.98 15 15 C -0.15 -3.55 9.98 21.22 0.21 -3.34 15 16 C -0.19 -3.49 11.22 66.71 0.75 -2.74 15 17 S 0.19 3.15 23.34 -56.49 -1.32 1.83 15 18 C -0.16 -3.45 7.07 66.75 0.47 -2.98 15 19 Cl 0.00 0.06 28.29 -2.72 -0.08 -0.02 15 20 H 0.27 15.35 8.31 -92.71 -0.77 14.58 15 21 H 0.02 1.21 8.14 -2.39 -0.02 1.19 15 22 H -0.02 -1.49 8.14 -2.39 -0.02 -1.51 15 23 H 0.06 2.64 8.14 -2.39 -0.02 2.62 15 24 H 0.14 4.49 8.14 -2.39 -0.02 4.47 15 25 H 0.10 2.50 8.13 -2.39 -0.02 2.48 15 26 H 0.15 2.93 7.45 -2.39 -0.02 2.91 15 27 H 0.14 3.41 8.06 -2.91 -0.02 3.39 15 28 H 0.20 2.29 8.06 -2.91 -0.02 2.27 15 Total: -1.00 -76.50 292.05 1.65 -74.85 By element: Atomic # 1 Polarization: 1.10 SS G_CDS: 1.17 Total: 2.27 kcal Atomic # 6 Polarization: -67.71 SS G_CDS: 3.02 Total: -64.69 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: 0.28 Total: -57.27 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -2.70 Total: -44.80 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: 45.42 SS G_CDS: -2.06 Total: 43.36 kcal Atomic # 17 Polarization: 0.06 SS G_CDS: -0.08 Total: -0.02 kcal Total: -76.50 1.65 -74.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594686936.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.178 kcal (2) G-P(sol) polarization free energy of solvation -76.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds