Wall clock time and date at job start Mon Mar 30 2020 07:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.29436 * 117.96505 * 2 1 4 4 C 1.50073 * 124.07752 * 179.48625 * 3 2 1 5 5 H 1.08995 * 109.35816 * 256.94271 * 4 3 2 6 6 C 1.53002 * 109.35866 * 137.22217 * 4 3 2 7 7 C 1.53032 * 110.13843 * 17.16897 * 4 3 2 8 8 C 1.53397 * 108.42497 * 310.53516 * 7 4 3 9 9 H 1.09003 * 109.81541 * 307.65638 * 8 7 4 10 10 C 1.52999 * 109.64040 * 187.13672 * 8 7 4 11 11 N 1.46904 * 109.47159 * 177.95274 * 10 8 7 12 12 C 1.46847 * 111.00155 * 169.88892 * 11 10 8 13 13 C 1.53034 * 109.52200 * 185.84218 * 12 11 10 14 14 C 1.53129 * 109.30889 * 300.83963 * 13 12 11 15 15 C 1.53119 * 109.15865 * 57.59722 * 14 13 12 16 16 H 1.08998 * 109.50021 * 62.36432 * 15 14 13 17 17 C 1.50698 * 109.50110 * 182.44538 * 15 14 13 18 18 H 1.07997 * 119.99883 * 119.92363 * 17 15 14 19 19 C 1.37877 * 119.99891 * 300.19439 * 17 15 14 20 20 N 1.31515 * 120.00388 * 359.72858 * 19 17 15 21 21 Si 1.86803 * 120.00031 * 179.72556 * 19 17 15 22 22 H 1.48506 * 109.46586 * 60.00288 * 21 19 17 23 23 H 1.48494 * 109.47060 * 179.97438 * 21 19 17 24 24 H 1.48491 * 109.47192 * 300.00562 * 21 19 17 25 25 C 1.46849 * 110.99789 * 294.10053 * 11 10 8 26 26 C 1.50068 * 117.95962 * 179.97438 * 2 1 3 27 27 H 1.09006 * 109.46910 * 270.02304 * 1 2 3 28 28 H 1.09001 * 109.46908 * 30.02233 * 1 2 3 29 29 H 1.08996 * 109.47129 * 150.02510 * 1 2 3 30 30 H 1.08004 * 117.96116 * 359.50800 * 3 2 1 31 31 H 1.09004 * 109.47266 * 59.99986 * 6 4 3 32 32 H 1.08991 * 109.46973 * 180.02562 * 6 4 3 33 33 H 1.09003 * 109.47054 * 300.00328 * 6 4 3 34 34 H 1.08997 * 109.63803 * 190.85900 * 7 4 3 35 35 H 1.09000 * 109.66019 * 70.22110 * 7 4 3 36 36 H 1.08998 * 109.47872 * 57.95223 * 10 8 7 37 37 H 1.08997 * 109.47146 * 297.94934 * 10 8 7 38 38 H 1.09003 * 109.45904 * 305.85155 * 12 11 10 39 39 H 1.08995 * 109.46286 * 65.83374 * 12 11 10 40 40 H 1.08994 * 109.50848 * 60.76276 * 13 12 11 41 41 H 1.09004 * 109.50275 * 180.84259 * 13 12 11 42 42 H 1.09000 * 109.49047 * 297.71301 * 14 13 12 43 43 H 1.09000 * 109.55541 * 177.52355 * 14 13 12 44 44 H 0.96990 * 120.00605 * 180.02562 * 20 19 17 45 45 H 1.08997 * 109.46185 * 54.14162 * 25 11 10 46 46 H 1.08999 * 109.46162 * 294.17238 * 25 11 10 47 47 H 1.09008 * 109.35747 * 76.94847 * 26 2 1 48 48 H 1.08998 * 109.24802 * 317.29083 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1140 1.1432 0.0000 4 6 3.6062 1.3030 0.0111 5 1 3.9327 1.5767 1.0144 6 6 4.0054 2.4064 -0.9707 7 6 4.2795 -0.0075 -0.4021 8 6 3.6702 -1.1473 0.4241 9 1 3.7164 -0.9004 1.4848 10 6 4.4432 -2.4417 0.1634 11 7 3.8878 -3.5193 0.9932 12 6 4.4386 -4.8227 0.6007 13 6 3.7331 -5.9326 1.3834 14 6 3.9365 -5.7022 2.8835 15 6 3.3991 -4.3179 3.2568 16 1 2.3281 -4.2777 3.0582 17 6 3.6497 -4.0587 4.7200 18 1 4.2571 -3.2189 5.0233 19 6 3.1080 -4.8971 5.6712 20 7 2.3683 -5.9198 5.3018 21 14 3.4249 -4.5803 7.4847 22 1 2.9046 -3.2385 7.8510 23 1 2.7362 -5.6160 8.2958 24 1 4.8852 -4.6340 7.7488 25 6 4.1143 -3.2548 2.4198 26 6 2.2106 -1.3255 0.0006 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5134 30 1 1.5089 2.0378 -0.0082 31 1 3.5363 3.3444 -0.6737 32 1 5.0890 2.5237 -0.9644 33 1 3.6753 2.1369 -1.9740 34 1 5.3503 0.0537 -0.2082 35 1 4.1060 -0.1905 -1.4626 36 1 5.4936 -2.2945 0.4144 37 1 4.3555 -2.7116 -0.8889 38 1 4.2829 -4.9761 -0.4672 39 1 5.5061 -4.8466 0.8193 40 1 2.6675 -5.9182 1.1548 41 1 4.1525 -6.8988 1.1028 42 1 4.9994 -5.7559 3.1188 43 1 3.3989 -6.4656 3.4460 44 1 1.9870 -6.5094 5.9710 45 1 3.7231 -2.2695 2.6730 46 1 5.1834 -3.2860 2.6297 47 1 2.1749 -1.7540 -1.0011 48 1 1.7112 -1.9971 0.6989 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597175283.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:31 Heat of formation + Delta-G solvation = -19.752416 kcal Electronic energy + Delta-G solvation = -22640.910168 eV Core-core repulsion = 19694.101486 eV Total energy + Delta-G solvation = -2946.808682 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.38318 -37.80770 -34.19646 -33.40937 -32.57918 -30.57732 -29.81977 -26.83883 -26.39645 -25.44029 -24.91185 -22.39487 -21.38188 -20.96355 -19.84735 -18.55231 -17.54097 -16.32594 -15.46946 -15.20883 -14.69275 -14.31054 -14.17165 -13.86357 -13.68692 -13.47636 -13.05421 -12.87166 -12.58959 -12.40391 -12.36902 -12.17454 -11.89782 -11.86694 -11.63472 -11.38995 -11.36246 -11.00263 -10.91024 -10.71105 -10.63014 -10.33870 -10.12330 -10.04873 -9.94699 -9.75609 -9.38717 -8.95636 -8.64871 -8.55634 -8.26250 -7.57342 -5.93814 -3.99778 2.41731 3.34187 3.38813 3.41379 4.40196 4.53324 4.75079 4.81642 5.04033 5.15537 5.30831 5.36007 5.38388 5.45986 5.57025 5.64088 5.68654 5.72361 5.78726 5.82722 5.86625 5.87979 5.95113 5.99763 6.02728 6.08424 6.10311 6.14617 6.24984 6.32108 6.32621 6.46682 6.53673 6.59809 6.65986 6.76765 6.81791 6.86196 7.05289 7.21230 7.26958 7.45705 7.74044 7.79514 7.90303 8.13459 8.22140 8.52928 9.04174 9.64260 11.12065 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.017393 B = 0.004603 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.454644 B = 6081.126955 C = 6652.013391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.112 4.112 3 C -0.170 4.170 4 C -0.057 4.057 5 H 0.075 0.925 6 C -0.141 4.141 7 C -0.108 4.108 8 C -0.083 4.083 9 H 0.076 0.924 10 C 0.062 3.938 11 N -0.536 5.536 12 C 0.064 3.936 13 C -0.117 4.117 14 C -0.111 4.111 15 C 0.056 3.944 16 H 0.033 0.967 17 C -0.514 4.514 18 H 0.052 0.948 19 C 0.064 3.936 20 N -0.889 5.889 21 Si 0.889 3.111 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.278 1.278 25 C 0.066 3.934 26 C -0.067 4.067 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.025 0.975 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.021 0.979 40 H 0.060 0.940 41 H 0.044 0.956 42 H 0.028 0.972 43 H 0.090 0.910 44 H 0.259 0.741 45 H 0.061 0.939 46 H 0.015 0.985 47 H 0.067 0.933 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.318 10.551 -13.123 16.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.112 4.112 3 C -0.188 4.188 4 C -0.075 4.075 5 H 0.093 0.907 6 C -0.198 4.198 7 C -0.146 4.146 8 C -0.102 4.102 9 H 0.095 0.905 10 C -0.066 4.066 11 N -0.260 5.260 12 C -0.064 4.064 13 C -0.155 4.155 14 C -0.149 4.149 15 C 0.037 3.963 16 H 0.051 0.949 17 C -0.553 4.553 18 H 0.070 0.930 19 C -0.137 4.137 20 N -0.528 5.528 21 Si 0.717 3.283 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.204 1.204 25 C -0.061 4.061 26 C -0.104 4.104 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.114 0.886 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.043 0.957 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.039 0.961 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.047 0.953 43 H 0.108 0.892 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.034 0.966 47 H 0.086 0.914 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.701 10.377 -13.128 16.748 hybrid contribution 1.051 0.194 1.198 1.605 sum 1.752 10.570 -11.930 16.035 Atomic orbital electron populations 1.20950 0.92973 1.01833 1.02110 1.21085 0.95577 0.95521 0.99066 1.21794 0.95469 0.96907 1.04661 1.19946 0.92918 0.95312 0.99373 0.90720 1.21781 1.00820 0.97951 0.99234 1.21692 0.99104 0.93967 0.99830 1.21227 0.94932 0.93594 1.00419 0.90521 1.22082 0.95520 0.91630 0.97418 1.61989 1.58129 1.00868 1.05036 1.21998 0.95996 0.90203 0.98202 1.21668 1.00145 0.95254 0.98392 1.21654 0.99184 1.02435 0.91598 1.18642 0.95765 0.89440 0.92439 0.94865 1.21121 1.31474 1.11659 0.91025 0.93016 1.24918 0.95051 0.95157 0.98620 1.69876 1.33760 1.15781 1.33344 0.86718 0.78303 0.77878 0.85434 1.20327 1.21328 1.20421 1.22340 0.97713 1.00757 0.85246 1.20314 0.94403 0.93842 1.01856 0.91483 0.92562 0.91935 0.88574 0.92929 0.92805 0.92796 0.92116 0.91967 0.95730 0.91806 0.92608 0.96124 0.92143 0.93692 0.95310 0.89162 0.93057 0.92056 0.96624 0.91443 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 9.87 36.01 0.36 -1.04 16 2 C -0.11 -1.45 5.84 -100.94 -0.59 -2.04 16 3 C -0.17 -2.06 8.61 -35.90 -0.31 -2.37 16 4 C -0.06 -0.65 2.98 -92.06 -0.27 -0.92 16 5 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 6 C -0.14 -1.31 9.13 37.16 0.34 -0.97 16 7 C -0.11 -1.27 4.59 -26.51 -0.12 -1.39 16 8 C -0.08 -1.17 2.13 -90.41 -0.19 -1.36 16 9 H 0.08 1.24 6.31 -51.93 -0.33 0.91 16 10 C 0.06 0.93 4.37 -3.82 -0.02 0.92 16 11 N -0.54 -9.78 4.24 -234.67 -1.00 -10.78 16 12 C 0.06 1.13 5.46 -3.84 -0.02 1.11 16 13 C -0.12 -2.30 6.09 -26.65 -0.16 -2.46 16 14 C -0.11 -2.64 5.02 -26.60 -0.13 -2.77 16 15 C 0.06 1.40 2.26 -91.69 -0.21 1.20 16 16 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 17 C -0.51 -14.18 8.57 -34.44 -0.30 -14.47 16 18 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 19 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 20 N -0.89 -25.46 11.35 55.43 0.63 -24.83 16 21 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.07 1.41 4.52 -3.83 -0.02 1.40 16 26 C -0.07 -0.95 4.83 -28.18 -0.14 -1.09 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.56 7.89 -51.93 -0.41 0.15 16 29 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 30 H 0.10 1.07 7.80 -52.48 -0.41 0.66 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 36 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 37 H 0.06 0.88 7.98 -51.93 -0.41 0.47 16 38 H 0.06 0.87 8.01 -51.93 -0.42 0.45 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.09 2.41 6.14 -51.93 -0.32 2.09 16 44 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.06 1.31 6.17 -51.93 -0.32 0.99 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.07 0.91 8.10 -51.92 -0.42 0.49 16 48 H 0.09 1.42 8.02 -51.93 -0.42 1.01 16 LS Contribution 360.49 15.07 5.43 5.43 Total: -1.00 -27.64 360.49 -11.16 -38.80 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -9.33 Total: -0.41 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: -1.88 Total: -24.59 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: -0.37 Total: -35.61 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -27.64 -11.16 -38.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175283.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.048 kcal (2) G-P(sol) polarization free energy of solvation -27.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds