Wall clock time and date at job start Mon Mar 30 2020 07:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.29436 * 117.96505 * 2 1 4 4 C 1.50073 * 124.07752 * 179.48625 * 3 2 1 5 5 H 1.08995 * 109.35816 * 256.94271 * 4 3 2 6 6 C 1.53002 * 109.35866 * 137.22217 * 4 3 2 7 7 C 1.53032 * 110.13843 * 17.16897 * 4 3 2 8 8 C 1.53397 * 108.42497 * 310.53516 * 7 4 3 9 9 H 1.09003 * 109.81541 * 307.65638 * 8 7 4 10 10 C 1.52999 * 109.64040 * 187.13672 * 8 7 4 11 11 N 1.46904 * 109.47159 * 177.95274 * 10 8 7 12 12 C 1.46847 * 111.00155 * 169.88892 * 11 10 8 13 13 C 1.53034 * 109.52200 * 185.84218 * 12 11 10 14 14 C 1.53129 * 109.30889 * 300.83963 * 13 12 11 15 15 C 1.53119 * 109.15865 * 57.59722 * 14 13 12 16 16 H 1.08998 * 109.50021 * 62.36432 * 15 14 13 17 17 C 1.50698 * 109.50110 * 182.44538 * 15 14 13 18 18 H 1.07997 * 119.99883 * 119.92363 * 17 15 14 19 19 C 1.37877 * 119.99891 * 300.19439 * 17 15 14 20 20 N 1.31515 * 120.00388 * 359.72858 * 19 17 15 21 21 Si 1.86803 * 120.00031 * 179.72556 * 19 17 15 22 22 H 1.48506 * 109.46586 * 60.00288 * 21 19 17 23 23 H 1.48494 * 109.47060 * 179.97438 * 21 19 17 24 24 H 1.48491 * 109.47192 * 300.00562 * 21 19 17 25 25 C 1.46849 * 110.99789 * 294.10053 * 11 10 8 26 26 C 1.50068 * 117.95962 * 179.97438 * 2 1 3 27 27 H 1.09006 * 109.46910 * 270.02304 * 1 2 3 28 28 H 1.09001 * 109.46908 * 30.02233 * 1 2 3 29 29 H 1.08996 * 109.47129 * 150.02510 * 1 2 3 30 30 H 1.08004 * 117.96116 * 359.50800 * 3 2 1 31 31 H 1.09004 * 109.47266 * 59.99986 * 6 4 3 32 32 H 1.08991 * 109.46973 * 180.02562 * 6 4 3 33 33 H 1.09003 * 109.47054 * 300.00328 * 6 4 3 34 34 H 1.08997 * 109.63803 * 190.85900 * 7 4 3 35 35 H 1.09000 * 109.66019 * 70.22110 * 7 4 3 36 36 H 1.08998 * 109.47872 * 57.95223 * 10 8 7 37 37 H 1.08997 * 109.47146 * 297.94934 * 10 8 7 38 38 H 1.09003 * 109.45904 * 305.85155 * 12 11 10 39 39 H 1.08995 * 109.46286 * 65.83374 * 12 11 10 40 40 H 1.08994 * 109.50848 * 60.76276 * 13 12 11 41 41 H 1.09004 * 109.50275 * 180.84259 * 13 12 11 42 42 H 1.09000 * 109.49047 * 297.71301 * 14 13 12 43 43 H 1.09000 * 109.55541 * 177.52355 * 14 13 12 44 44 H 0.96990 * 120.00605 * 180.02562 * 20 19 17 45 45 H 1.08997 * 109.46185 * 54.14162 * 25 11 10 46 46 H 1.08999 * 109.46162 * 294.17238 * 25 11 10 47 47 H 1.09008 * 109.35747 * 76.94847 * 26 2 1 48 48 H 1.08998 * 109.24802 * 317.29083 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1140 1.1432 0.0000 4 6 3.6062 1.3030 0.0111 5 1 3.9327 1.5767 1.0144 6 6 4.0054 2.4064 -0.9707 7 6 4.2795 -0.0075 -0.4021 8 6 3.6702 -1.1473 0.4241 9 1 3.7164 -0.9004 1.4848 10 6 4.4432 -2.4417 0.1634 11 7 3.8878 -3.5193 0.9932 12 6 4.4386 -4.8227 0.6007 13 6 3.7331 -5.9326 1.3834 14 6 3.9365 -5.7022 2.8835 15 6 3.3991 -4.3179 3.2568 16 1 2.3281 -4.2777 3.0582 17 6 3.6497 -4.0587 4.7200 18 1 4.2571 -3.2189 5.0233 19 6 3.1080 -4.8971 5.6712 20 7 2.3683 -5.9198 5.3018 21 14 3.4249 -4.5803 7.4847 22 1 2.9046 -3.2385 7.8510 23 1 2.7362 -5.6160 8.2958 24 1 4.8852 -4.6340 7.7488 25 6 4.1143 -3.2548 2.4198 26 6 2.2106 -1.3255 0.0006 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5134 30 1 1.5089 2.0378 -0.0082 31 1 3.5363 3.3444 -0.6737 32 1 5.0890 2.5237 -0.9644 33 1 3.6753 2.1369 -1.9740 34 1 5.3503 0.0537 -0.2082 35 1 4.1060 -0.1905 -1.4626 36 1 5.4936 -2.2945 0.4144 37 1 4.3555 -2.7116 -0.8889 38 1 4.2829 -4.9761 -0.4672 39 1 5.5061 -4.8466 0.8193 40 1 2.6675 -5.9182 1.1548 41 1 4.1525 -6.8988 1.1028 42 1 4.9994 -5.7559 3.1188 43 1 3.3989 -6.4656 3.4460 44 1 1.9870 -6.5094 5.9710 45 1 3.7231 -2.2695 2.6730 46 1 5.1834 -3.2860 2.6297 47 1 2.1749 -1.7540 -1.0011 48 1 1.7112 -1.9971 0.6989 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597175283.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:30 Heat of formation + Delta-G solvation = -32.377104 kcal Electronic energy + Delta-G solvation = -22641.457615 eV Core-core repulsion = 19694.101486 eV Total energy + Delta-G solvation = -2947.356129 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.56582 -39.24986 -35.84301 -34.37548 -34.19854 -32.06243 -31.64717 -27.77111 -27.35884 -26.96503 -26.69360 -23.92003 -23.04547 -21.97851 -21.08738 -20.30716 -18.61471 -18.35225 -16.87199 -16.44196 -16.37782 -15.74104 -15.45145 -15.04173 -14.88614 -14.72521 -14.64015 -14.26782 -14.07763 -13.97613 -13.40310 -13.23075 -13.15732 -13.09474 -12.90217 -12.82802 -12.68106 -12.53573 -12.40862 -12.23626 -11.98954 -11.81779 -11.74402 -11.51130 -11.27978 -11.19423 -10.95147 -10.79897 -10.57022 -10.36587 -9.53488 -9.06282 -8.07560 -6.21715 1.40393 1.41656 1.43885 1.49305 2.42526 3.11438 3.19072 3.74433 3.81241 3.98984 4.21139 4.24258 4.26403 4.32229 4.37834 4.45780 4.52141 4.62516 4.67619 4.69885 4.73721 4.78106 4.79149 4.85635 4.90433 4.92723 4.95014 5.00258 5.03760 5.06478 5.13711 5.14334 5.20796 5.25395 5.31414 5.39717 5.41675 5.46286 5.54977 5.59238 5.63680 5.88686 5.98792 6.15119 6.22031 6.23487 6.43164 6.48496 6.90867 7.45926 8.96785 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.017393 B = 0.004603 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.454644 B = 6081.126955 C = 6652.013391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.133 4.133 3 C -0.164 4.164 4 C -0.061 4.061 5 H 0.068 0.932 6 C -0.135 4.135 7 C -0.100 4.100 8 C -0.080 4.080 9 H 0.049 0.951 10 C 0.064 3.936 11 N -0.543 5.543 12 C 0.066 3.934 13 C -0.110 4.110 14 C -0.104 4.104 15 C 0.055 3.945 16 H -0.005 1.005 17 C -0.537 4.537 18 H 0.048 0.952 19 C 0.016 3.984 20 N -0.915 5.915 21 Si 0.952 3.048 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.085 3.915 26 C -0.061 4.061 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.028 0.972 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.024 0.976 40 H 0.050 0.950 41 H 0.068 0.932 42 H 0.020 0.980 43 H 0.057 0.943 44 H 0.260 0.740 45 H 0.054 0.946 46 H 0.008 0.992 47 H 0.075 0.925 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.314 11.841 -14.649 18.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.133 4.133 3 C -0.182 4.182 4 C -0.080 4.080 5 H 0.086 0.914 6 C -0.192 4.192 7 C -0.138 4.138 8 C -0.099 4.099 9 H 0.068 0.932 10 C -0.063 4.063 11 N -0.268 5.268 12 C -0.061 4.061 13 C -0.148 4.148 14 C -0.142 4.142 15 C 0.036 3.964 16 H 0.013 0.987 17 C -0.576 4.576 18 H 0.066 0.934 19 C -0.183 4.183 20 N -0.554 5.554 21 Si 0.777 3.223 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.043 4.043 26 C -0.098 4.098 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.127 0.873 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.046 0.954 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.042 0.958 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.038 0.962 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.026 0.974 47 H 0.093 0.907 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.703 11.676 -14.667 18.824 hybrid contribution 0.716 -0.206 1.671 1.830 sum 2.419 11.470 -12.996 17.501 Atomic orbital electron populations 1.20941 0.92192 1.02719 1.01830 1.21153 0.96353 0.95219 1.00606 1.22024 0.96182 0.96992 1.03032 1.20008 0.92337 0.95884 0.99724 0.91413 1.21732 1.01518 0.97314 0.98650 1.21646 0.99390 0.92986 0.99811 1.21173 0.95166 0.94269 0.99307 0.93227 1.22172 0.95542 0.90798 0.97828 1.61928 1.59000 1.02356 1.03467 1.22023 0.95634 0.88853 0.99630 1.21577 1.00120 0.97598 0.95477 1.21463 0.97734 1.00551 0.94480 1.18556 0.93883 0.91621 0.92348 0.98689 1.21491 1.31652 1.11698 0.92759 0.93390 1.25689 0.94794 0.94899 1.02904 1.70022 1.34361 1.16419 1.34587 0.85718 0.78420 0.77906 0.80251 1.19763 1.20776 1.19692 1.21946 0.96323 0.98963 0.87056 1.20191 0.94255 0.94112 1.01236 0.92334 0.90799 0.91963 0.87316 0.92174 0.91883 0.92388 0.91270 0.90859 0.95372 0.89468 0.89203 0.95824 0.93129 0.91300 0.96163 0.92429 0.93068 0.92720 0.97391 0.90711 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 9.87 71.24 0.70 -1.98 16 2 C -0.13 -3.35 5.84 -15.09 -0.09 -3.43 16 3 C -0.16 -3.71 8.61 27.05 0.23 -3.48 16 4 C -0.06 -1.26 2.98 -11.72 -0.03 -1.30 16 5 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 6 C -0.13 -2.12 9.13 71.98 0.66 -1.46 16 7 C -0.10 -2.14 4.59 30.74 0.14 -2.00 16 8 C -0.08 -2.20 2.13 -10.65 -0.02 -2.23 16 9 H 0.05 1.63 6.31 -2.39 -0.02 1.62 16 10 C 0.06 1.82 4.37 86.30 0.38 2.20 16 11 N -0.54 -19.53 4.24 -896.37 -3.80 -23.33 16 12 C 0.07 2.22 5.46 86.32 0.47 2.70 16 13 C -0.11 -4.28 6.09 30.65 0.19 -4.09 16 14 C -0.10 -5.11 5.02 30.68 0.15 -4.96 16 15 C 0.05 2.86 2.26 -11.49 -0.03 2.84 16 16 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 17 C -0.54 -30.63 8.57 25.60 0.22 -30.41 16 18 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 19 C 0.02 0.91 5.30 84.65 0.45 1.35 16 20 N -0.91 -54.05 11.35 21.45 0.24 -53.81 16 21 Si 0.95 44.53 29.54 68.60 2.03 46.56 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 24 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 25 C 0.08 3.70 4.52 86.33 0.39 4.09 16 26 C -0.06 -1.70 4.83 29.66 0.14 -1.56 16 27 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.07 1.35 7.89 -2.39 -0.02 1.34 16 29 H 0.06 1.36 8.08 -2.39 -0.02 1.34 16 30 H 0.11 2.17 7.80 -2.91 -0.02 2.15 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.07 1.43 8.10 -2.39 -0.02 1.41 16 36 H 0.03 0.80 8.12 -2.39 -0.02 0.78 16 37 H 0.09 2.11 7.98 -2.39 -0.02 2.09 16 38 H 0.09 2.47 8.01 -2.39 -0.02 2.45 16 39 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.06 3.19 6.14 -2.39 -0.01 3.18 16 44 H 0.26 14.64 8.31 -92.72 -0.77 13.87 16 45 H 0.05 2.42 6.17 -2.39 -0.01 2.41 16 46 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 47 H 0.07 1.93 8.10 -2.38 -0.02 1.91 16 48 H 0.05 1.83 8.02 -2.39 -0.02 1.81 16 Total: -1.00 -61.28 360.49 3.29 -57.98 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.87 Total: 16.31 kcal Atomic # 6 Polarization: -47.67 SS G_CDS: 3.95 Total: -43.72 kcal Atomic # 7 Polarization: -73.58 SS G_CDS: -3.56 Total: -77.14 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -61.28 3.29 -57.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175283.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.607 kcal (2) G-P(sol) polarization free energy of solvation -61.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds