Wall clock time and date at job start Mon Mar 30 2020 07:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.29444 * 117.96017 * 2 1 4 4 C 1.50069 * 124.07205 * 179.53123 * 3 2 1 5 5 H 1.08994 * 109.35880 * 256.94659 * 4 3 2 6 6 C 1.53004 * 109.35519 * 137.22209 * 4 3 2 7 7 C 1.53036 * 110.14005 * 17.17356 * 4 3 2 8 8 C 1.53394 * 108.42372 * 310.52750 * 7 4 3 9 9 H 1.08997 * 109.82186 * 307.66797 * 8 7 4 10 10 C 1.53001 * 109.64119 * 187.13591 * 8 7 4 11 11 N 1.46901 * 109.47188 * 63.09491 * 10 8 7 12 12 C 1.46845 * 110.99833 * 176.32796 * 11 10 8 13 13 C 1.53037 * 109.52049 * 174.16120 * 12 11 10 14 14 C 1.53120 * 109.28054 * 59.18456 * 13 12 11 15 15 C 1.53130 * 109.15519 * 302.34435 * 14 13 12 16 16 H 1.09001 * 109.50005 * 297.71499 * 15 14 13 17 17 C 1.50697 * 109.49882 * 177.63368 * 15 14 13 18 18 H 1.07997 * 119.99902 * 239.99519 * 17 15 14 19 19 C 1.37886 * 120.00092 * 60.00390 * 17 15 14 20 20 N 1.31518 * 119.99835 * 359.97438 * 19 17 15 21 21 Si 1.86792 * 119.99914 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47598 * 59.99785 * 21 19 17 23 23 H 1.48504 * 109.47160 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47351 * 299.99454 * 21 19 17 25 25 C 1.46843 * 110.99736 * 52.12295 * 11 10 8 26 26 C 1.50070 * 117.95986 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47020 * 269.97442 * 1 2 3 28 28 H 1.09003 * 109.47429 * 29.97699 * 1 2 3 29 29 H 1.09003 * 109.47549 * 149.97651 * 1 2 3 30 30 H 1.07996 * 117.96340 * 359.55468 * 3 2 1 31 31 H 1.08997 * 109.46889 * 60.00414 * 6 4 3 32 32 H 1.08995 * 109.46738 * 179.97438 * 6 4 3 33 33 H 1.08997 * 109.47374 * 300.00054 * 6 4 3 34 34 H 1.09007 * 109.63483 * 190.85922 * 7 4 3 35 35 H 1.08992 * 109.66531 * 70.21670 * 7 4 3 36 36 H 1.08998 * 109.47296 * 303.09459 * 10 8 7 37 37 H 1.09009 * 109.46915 * 183.09541 * 10 8 7 38 38 H 1.09001 * 109.46244 * 54.15029 * 12 11 10 39 39 H 1.08995 * 109.46545 * 294.17769 * 12 11 10 40 40 H 1.09005 * 109.50262 * 179.12308 * 13 12 11 41 41 H 1.09004 * 109.50461 * 299.19715 * 13 12 11 42 42 H 1.08997 * 109.52501 * 62.24736 * 14 13 12 43 43 H 1.08996 * 109.52479 * 182.44078 * 14 13 12 44 44 H 0.96998 * 120.00001 * 180.02562 * 20 19 17 45 45 H 1.08994 * 109.46731 * 65.82372 * 25 11 10 46 46 H 1.09003 * 109.46240 * 305.85079 * 25 11 10 47 47 H 1.09003 * 109.35845 * 76.90554 * 26 2 1 48 48 H 1.08994 * 109.36073 * 317.31289 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1139 1.1433 0.0000 4 6 3.6060 1.3031 0.0102 5 1 3.9333 1.5764 1.0133 6 6 4.0045 2.4069 -0.9716 7 6 4.2791 -0.0073 -0.4042 8 6 3.6705 -1.1473 0.4221 9 1 3.7173 -0.9008 1.4828 10 6 4.4433 -2.4416 0.1603 11 7 5.8320 -2.2827 0.6122 12 6 6.5826 -3.5352 0.4565 13 6 8.0549 -3.2949 0.7981 14 6 8.1635 -2.7888 2.2392 15 6 7.3337 -1.5103 2.3866 16 1 7.7367 -0.7374 1.7321 17 6 7.3881 -1.0374 3.8164 18 1 6.4780 -0.9504 4.3914 19 6 8.5997 -0.7157 4.3906 20 7 9.7080 -0.8219 3.6906 21 14 8.6669 -0.1289 6.1627 22 1 8.1158 -1.1811 7.0539 23 1 10.0763 0.1494 6.5389 24 1 7.8623 1.1112 6.3045 25 6 5.8824 -1.8024 1.9990 26 6 2.2106 -1.3255 -0.0006 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3634 0.8902 -0.5135 29 1 -0.3634 -0.8898 -0.5142 30 1 1.5088 2.0379 -0.0074 31 1 3.5356 3.3447 -0.6738 32 1 5.0880 2.5248 -0.9654 33 1 3.6737 2.1378 -1.9747 34 1 5.3502 0.0540 -0.2109 35 1 4.1049 -0.1898 -1.4645 36 1 4.4315 -2.6623 -0.9070 37 1 3.9751 -3.2610 0.7059 38 1 6.5008 -3.8820 -0.5736 39 1 6.1727 -4.2901 1.1274 40 1 8.6089 -4.2282 0.6975 41 1 8.4695 -2.5506 0.1181 42 1 7.7850 -3.5495 2.9219 43 1 9.2065 -2.5751 2.4726 44 1 10.5604 -0.5959 4.0946 45 1 5.4758 -2.5654 2.6627 46 1 5.2919 -0.8906 2.0892 47 1 2.1742 -1.7535 -1.0024 48 1 1.7123 -1.9994 0.6963 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597175288.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:35 Heat of formation + Delta-G solvation = -29.333243 kcal Electronic energy + Delta-G solvation = -22773.731843 eV Core-core repulsion = 19826.507705 eV Total energy + Delta-G solvation = -2947.224137 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.66136 -39.20547 -35.84998 -34.36434 -34.21625 -32.08777 -31.62074 -27.74934 -27.31893 -26.99552 -26.71376 -23.98820 -23.01420 -22.06288 -21.05819 -20.21313 -18.71636 -18.28168 -16.84396 -16.46821 -16.30494 -15.77847 -15.63528 -14.97701 -14.89463 -14.66973 -14.66002 -14.29833 -14.05552 -13.92420 -13.44053 -13.24715 -13.20043 -13.03012 -12.87250 -12.81701 -12.65851 -12.53194 -12.48739 -12.21052 -12.06764 -11.81349 -11.73587 -11.53144 -11.24036 -11.12061 -10.96379 -10.79815 -10.54214 -10.36003 -9.55273 -9.04900 -8.07189 -6.21147 1.40445 1.41572 1.42184 1.49223 2.42720 3.12881 3.19490 3.72421 3.86679 3.90217 4.20377 4.26886 4.31187 4.35564 4.37990 4.42358 4.51193 4.54792 4.63911 4.69886 4.74970 4.78261 4.80616 4.86133 4.90732 4.93196 4.96160 4.98632 5.02689 5.09314 5.13381 5.16585 5.17539 5.23856 5.27635 5.37085 5.40775 5.53769 5.55758 5.61422 5.64013 5.88635 5.99234 6.15678 6.18933 6.23772 6.43459 6.49124 6.91452 7.46399 8.97149 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.016554 B = 0.004949 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.997840 B = 5655.855943 C = 6439.144940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.131 4.131 3 C -0.161 4.161 4 C -0.067 4.067 5 H 0.055 0.945 6 C -0.135 4.135 7 C -0.093 4.093 8 C -0.086 4.086 9 H 0.052 0.948 10 C 0.065 3.935 11 N -0.543 5.543 12 C 0.066 3.934 13 C -0.110 4.110 14 C -0.104 4.104 15 C 0.055 3.945 16 H -0.005 1.005 17 C -0.536 4.536 18 H 0.047 0.953 19 C 0.016 3.984 20 N -0.914 5.914 21 Si 0.951 3.049 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.083 3.917 26 C -0.071 4.071 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.029 0.971 38 H 0.089 0.911 39 H 0.023 0.977 40 H 0.068 0.932 41 H 0.050 0.950 42 H 0.019 0.981 43 H 0.057 0.943 44 H 0.260 0.740 45 H 0.005 0.995 46 H 0.061 0.939 47 H 0.085 0.915 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.539 -0.692 -10.411 18.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.131 4.131 3 C -0.179 4.179 4 C -0.085 4.085 5 H 0.074 0.926 6 C -0.193 4.193 7 C -0.131 4.131 8 C -0.105 4.105 9 H 0.071 0.929 10 C -0.063 4.063 11 N -0.267 5.267 12 C -0.062 4.062 13 C -0.148 4.148 14 C -0.143 4.143 15 C 0.036 3.964 16 H 0.013 0.987 17 C -0.575 4.575 18 H 0.066 0.934 19 C -0.183 4.183 20 N -0.554 5.554 21 Si 0.776 3.224 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.045 4.045 26 C -0.108 4.108 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.127 0.873 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.047 0.953 38 H 0.108 0.892 39 H 0.042 0.958 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.038 0.962 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.023 0.977 46 H 0.079 0.921 47 H 0.104 0.896 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.136 -0.318 -10.703 18.541 hybrid contribution 0.239 -0.129 1.841 1.860 sum -14.898 -0.447 -8.863 17.340 Atomic orbital electron populations 1.20926 0.91124 1.03011 1.02261 1.21077 0.96658 0.94670 1.00651 1.21989 0.95245 0.97680 1.02990 1.20026 0.93231 0.96170 0.99048 0.92641 1.21719 1.00903 0.97659 0.98977 1.21501 0.99288 0.93075 0.99190 1.21267 0.94760 0.94978 0.99467 0.92913 1.22152 0.87195 0.96176 1.00760 1.61967 1.13037 1.29797 1.21936 1.22017 0.93690 0.89668 1.00786 1.21576 0.95946 1.00224 0.97020 1.21469 1.01993 0.96740 0.94074 1.18559 0.90813 0.93197 0.93819 0.98658 1.21481 0.92810 1.44524 0.98664 0.93436 1.25683 0.95427 0.95617 1.01530 1.70027 0.98227 1.49257 1.37863 0.85731 0.77062 0.78933 0.80644 1.19752 1.20781 1.19742 1.21991 0.98239 0.97572 0.86679 1.20381 0.93072 0.95067 1.02321 0.91558 0.91385 0.91035 0.87284 0.92004 0.93316 0.91970 0.92879 0.91480 0.89493 0.95268 0.89247 0.95849 0.91325 0.93105 0.96209 0.92440 0.93085 0.97661 0.92106 0.89625 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.87 9.87 71.23 0.70 -1.16 16 2 C -0.13 -2.77 5.84 -15.10 -0.09 -2.86 16 3 C -0.16 -3.70 8.61 27.04 0.23 -3.47 16 4 C -0.07 -1.76 2.98 -11.72 -0.03 -1.80 16 5 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 6 C -0.14 -3.10 9.13 71.98 0.66 -2.44 16 7 C -0.09 -2.64 4.52 30.74 0.14 -2.50 16 8 C -0.09 -2.38 1.74 -10.65 -0.02 -2.40 16 9 H 0.05 1.74 6.04 -2.39 -0.01 1.73 16 10 C 0.06 1.83 4.53 86.30 0.39 2.22 16 11 N -0.54 -19.57 4.05 -896.38 -3.63 -23.20 16 12 C 0.07 2.23 5.46 86.33 0.47 2.70 16 13 C -0.11 -4.29 6.09 30.65 0.19 -4.11 16 14 C -0.10 -5.15 5.03 30.68 0.15 -4.99 16 15 C 0.05 2.87 2.26 -11.49 -0.03 2.84 16 16 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 17 C -0.54 -30.53 8.57 25.60 0.22 -30.31 16 18 H 0.05 2.67 7.74 -2.91 -0.02 2.64 16 19 C 0.02 0.92 5.30 84.66 0.45 1.37 16 20 N -0.91 -54.03 11.35 21.45 0.24 -53.78 16 21 Si 0.95 44.55 29.54 68.60 2.03 46.58 16 22 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 23 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 24 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 25 C 0.08 3.60 4.27 86.33 0.37 3.97 16 26 C -0.07 -1.53 5.09 29.66 0.15 -1.38 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.07 0.97 7.89 -2.39 -0.02 0.95 16 29 H 0.07 0.98 8.08 -2.39 -0.02 0.96 16 30 H 0.11 2.22 7.80 -2.91 -0.02 2.19 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.05 1.84 7.54 -2.38 -0.02 1.82 16 35 H 0.07 1.73 8.09 -2.39 -0.02 1.71 16 36 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.03 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.09 2.48 8.12 -2.39 -0.02 2.46 16 39 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 41 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.06 3.19 6.15 -2.39 -0.01 3.18 16 44 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 45 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 46 H 0.06 2.67 5.77 -2.39 -0.01 2.66 16 47 H 0.09 1.61 8.10 -2.39 -0.02 1.59 16 48 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -61.32 359.15 3.47 -57.84 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.88 Total: 16.86 kcal Atomic # 6 Polarization: -48.26 SS G_CDS: 3.96 Total: -44.30 kcal Atomic # 7 Polarization: -73.60 SS G_CDS: -3.38 Total: -76.98 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -61.32 3.47 -57.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175288.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.511 kcal (2) G-P(sol) polarization free energy of solvation -61.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds