Wall clock time and date at job start Mon Mar 30 2020 07:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30790 * 1 3 3 Si 1.86801 * 119.99749 * 2 1 4 4 H 1.48497 * 109.47380 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46944 * 120.00539 * 3 2 1 6 6 H 1.48504 * 109.47069 * 240.00302 * 3 2 1 7 7 C 1.40007 * 120.00408 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99797 * 2.95211 * 7 2 1 9 9 C 1.41062 * 120.00309 * 182.95390 * 7 2 1 10 10 N 1.34343 * 120.00114 * 6.83388 * 9 7 2 11 11 N 1.28403 * 122.92025 * 179.70985 * 10 9 7 12 12 C 1.33994 * 121.93126 * 0.60482 * 11 10 9 13 13 C 1.40158 * 121.45705 * 179.70649 * 12 11 10 14 14 C 1.36441 * 119.73801 * 180.02562 * 13 12 11 15 15 C 1.39257 * 121.17947 * 359.95602 * 14 13 12 16 16 C 1.36335 * 120.84060 * 0.02562 * 15 14 13 17 17 C 1.40429 * 119.45980 * 359.97438 * 16 15 14 18 18 C 1.40389 * 121.92090 * 179.97438 * 17 16 15 19 19 Br 1.89102 * 121.34795 * 0.04443 * 18 17 16 20 20 H 0.97002 * 119.99601 * 174.87057 * 1 2 3 21 21 H 1.08002 * 120.13053 * 359.97438 * 13 12 11 22 22 H 1.07999 * 119.40897 * 179.97438 * 14 13 12 23 23 H 1.07997 * 119.58002 * 180.02562 * 15 14 13 24 24 H 1.07995 * 120.27360 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 1.2769 2.7465 0.0006 5 1 3.0957 1.6964 1.2125 6 1 3.0955 1.6965 -1.2126 7 6 2.0080 -1.2124 -0.0005 8 1 1.4691 -2.1471 -0.0491 9 6 3.4172 -1.2133 0.0624 10 7 4.0814 -0.0625 0.2609 11 7 5.3619 0.0007 0.3330 12 6 6.1336 -1.0869 0.2021 13 6 7.5308 -1.0056 0.2765 14 6 8.2829 -2.1355 0.1377 15 6 7.6875 -3.3760 -0.0767 16 6 6.3317 -3.4964 -0.1548 17 6 5.5277 -2.3534 -0.0163 18 6 4.1272 -2.4178 -0.0884 19 35 3.2314 -4.0580 -0.3770 20 1 -0.4850 -0.8367 -0.0751 21 1 8.0103 -0.0521 0.4422 22 1 9.3591 -2.0666 0.1956 23 1 8.3077 -4.2538 -0.1825 24 1 5.8797 -4.4629 -0.3218 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694740174.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:39:15 Heat of formation + Delta-G solvation = 53.312884 kcal Electronic energy + Delta-G solvation = -13527.203885 eV Core-core repulsion = 11065.253648 eV Total energy + Delta-G solvation = -2461.950237 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 277.975 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.06805 -37.07044 -34.46961 -32.94416 -30.96432 -30.13269 -29.17090 -25.86778 -24.18085 -22.21165 -21.33180 -19.13672 -17.84886 -16.63800 -15.68082 -14.46528 -14.27389 -14.04057 -13.85018 -12.92297 -12.77791 -12.61216 -11.92683 -11.84917 -11.35740 -11.05295 -10.81396 -10.72887 -10.31752 -9.55976 -9.38982 -9.14384 -9.06016 -8.60543 -8.29765 -7.79053 -7.65927 -5.19082 0.79445 1.68700 2.53946 2.60534 3.24098 3.40323 3.72577 3.78527 4.14201 4.43244 5.02602 5.12263 5.26379 5.30303 5.53453 5.65192 5.84976 6.01693 6.28605 6.41605 6.55098 6.87542 6.89186 6.98752 7.02791 7.32277 7.60454 7.73987 8.08186 9.50550 9.67264 Molecular weight = 277.97amu Principal moments of inertia in cm(-1) A = 0.019187 B = 0.011159 C = 0.007088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.999696 B = 2508.612163 C = 3949.649002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.038 3.962 3 Si 1.126 2.874 4 H -0.312 1.312 5 H -0.263 1.263 6 H -0.281 1.281 7 C -0.412 4.412 8 H 0.106 0.894 9 C 0.175 3.825 10 N -0.279 5.279 11 N -0.164 5.164 12 C -0.048 4.048 13 C -0.031 4.031 14 C -0.177 4.177 15 C -0.081 4.081 16 C -0.148 4.148 17 C 0.023 3.977 18 C -0.222 4.222 19 Br -0.063 7.063 20 H 0.292 0.708 21 H 0.127 0.873 22 H 0.118 0.882 23 H 0.116 0.884 24 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.464 -5.993 -0.653 9.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.187 4.187 3 Si 0.956 3.044 4 H -0.243 1.243 5 H -0.189 1.189 6 H -0.209 1.209 7 C -0.442 4.442 8 H 0.124 0.876 9 C 0.056 3.944 10 N -0.146 5.146 11 N -0.025 5.025 12 C -0.177 4.177 13 C -0.052 4.052 14 C -0.198 4.198 15 C -0.100 4.100 16 C -0.168 4.168 17 C 0.014 3.986 18 C -0.313 4.313 19 Br 0.021 6.979 20 H 0.104 0.896 21 H 0.145 0.855 22 H 0.136 0.864 23 H 0.134 0.866 24 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.598 -3.587 -0.477 7.525 hybrid contribution 0.309 -3.191 -0.244 3.216 sum 6.907 -6.779 -0.721 9.705 Atomic orbital electron populations 1.70633 1.08077 1.33659 1.25925 1.28017 0.95411 1.06242 0.89044 0.82378 0.71524 0.69676 0.80810 1.24342 1.18888 1.20861 1.21226 0.89943 0.97742 1.35308 0.87615 1.19553 0.95410 0.87524 0.91884 1.72294 1.01372 1.23349 1.17598 1.73118 0.99607 1.26141 1.03636 1.19645 0.95121 0.90202 1.12742 1.20553 0.90899 0.98588 0.95176 1.20558 0.99324 0.92594 1.07351 1.20804 0.94560 0.97268 0.97415 1.20967 0.93685 0.97597 1.04514 1.18198 0.92124 0.94069 0.94174 1.21996 0.92537 0.91788 1.25017 1.96307 1.78658 1.27125 1.95839 0.89615 0.85515 0.86413 0.86573 0.85684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.03 13.65 55.55 0.76 -18.27 14 2 C 0.04 0.97 5.52 -17.33 -0.10 0.87 14 3 Si 1.13 26.26 25.56 -169.99 -4.35 21.91 14 4 H -0.31 -7.03 7.11 56.52 0.40 -6.63 14 5 H -0.26 -6.21 6.65 56.52 0.38 -5.83 14 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 14 7 C -0.41 -10.49 9.23 -37.85 -0.35 -10.84 14 8 H 0.11 2.65 6.70 -52.49 -0.35 2.30 14 9 C 0.18 4.47 6.46 -84.79 -0.55 3.92 14 10 N -0.28 -7.17 5.70 32.20 0.18 -6.98 14 11 N -0.16 -3.96 11.54 32.25 0.37 -3.59 14 12 C -0.05 -1.06 6.69 -84.73 -0.57 -1.63 14 13 C -0.03 -0.54 9.99 -39.51 -0.39 -0.93 14 14 C -0.18 -2.67 9.95 -39.85 -0.40 -3.07 14 15 C -0.08 -1.24 9.96 -39.89 -0.40 -1.64 14 16 C -0.15 -2.71 9.47 -39.44 -0.37 -3.08 14 17 C 0.02 0.50 5.75 -106.79 -0.61 -0.12 14 18 C -0.22 -5.19 6.38 -37.87 -0.24 -5.43 14 19 Br -0.06 -1.26 30.59 -68.01 -2.08 -3.34 14 20 H 0.29 6.89 8.72 -40.82 -0.36 6.54 14 21 H 0.13 1.92 8.06 -52.49 -0.42 1.50 14 22 H 0.12 1.37 8.06 -52.49 -0.42 0.95 14 23 H 0.12 1.38 8.06 -52.49 -0.42 0.96 14 24 H 0.13 2.13 6.91 -52.49 -0.36 1.77 14 LS Contribution 233.81 15.07 3.52 3.52 Total: -1.00 -26.69 233.81 -6.73 -33.42 By element: Atomic # 1 Polarization: -3.56 SS G_CDS: -1.16 Total: -4.72 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -3.98 Total: -21.95 kcal Atomic # 7 Polarization: -30.16 SS G_CDS: 1.31 Total: -28.84 kcal Atomic # 14 Polarization: 26.26 SS G_CDS: -4.35 Total: 21.91 kcal Atomic # 35 Polarization: -1.26 SS G_CDS: -2.08 Total: -3.34 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -26.69 -6.73 -33.42 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694740174.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.733 kcal (2) G-P(sol) polarization free energy of solvation -26.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds