Wall clock time and date at job start Mon Mar 30 2020 07:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47316 * 2 1 4 4 C 1.52998 * 109.47137 * 120.00464 * 2 1 3 5 5 C 1.50703 * 109.47443 * 184.99923 * 4 2 1 6 6 H 1.08001 * 119.99567 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99956 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00475 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99611 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47196 * 90.00449 * 9 7 5 11 11 H 1.48501 * 109.47021 * 210.00028 * 9 7 5 12 12 H 1.48496 * 109.47252 * 330.00221 * 9 7 5 13 13 N 1.46902 * 109.47052 * 240.00251 * 2 1 3 14 14 C 1.46897 * 111.00214 * 85.00128 * 13 2 1 15 15 C 1.53000 * 109.47009 * 180.02562 * 14 13 2 16 16 C 1.53001 * 109.46886 * 175.00373 * 15 14 13 17 17 C 1.52996 * 109.47486 * 59.99437 * 16 15 14 18 18 C 1.53002 * 109.46972 * 60.00463 * 17 16 15 19 19 C 1.53000 * 109.47233 * 59.99538 * 18 17 16 20 20 C 1.52996 * 109.47328 * 300.00469 * 19 18 17 21 21 C 1.52993 * 109.47473 * 60.00001 * 20 19 18 22 22 C 1.53002 * 109.46891 * 299.99597 * 20 19 18 23 23 C 1.52997 * 109.46978 * 60.00410 * 22 20 19 24 24 C 1.52997 * 109.46817 * 299.99733 * 18 17 16 25 25 H 1.08999 * 109.46932 * 300.00116 * 1 2 3 26 26 H 1.09007 * 109.46850 * 59.99754 * 1 2 3 27 27 H 1.08996 * 109.47240 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47152 * 304.99893 * 4 2 1 29 29 H 1.09003 * 109.47236 * 64.99224 * 4 2 1 30 30 H 0.96998 * 120.00112 * 179.97438 * 8 7 5 31 31 H 1.00902 * 110.99917 * 321.04334 * 13 2 1 32 32 H 1.09001 * 109.46743 * 60.00208 * 14 13 2 33 33 H 1.09002 * 109.46916 * 299.99918 * 14 13 2 34 34 H 1.08992 * 109.47399 * 54.99868 * 15 14 13 35 35 H 1.09001 * 109.47109 * 299.99380 * 16 15 14 36 36 H 1.08996 * 109.47452 * 300.00003 * 17 16 15 37 37 H 1.09000 * 109.47054 * 180.02562 * 17 16 15 38 38 H 1.09002 * 109.47070 * 179.97438 * 18 17 16 39 39 H 1.09004 * 109.46724 * 60.00652 * 19 18 17 40 40 H 1.09001 * 109.47194 * 179.97438 * 19 18 17 41 41 H 1.09004 * 109.47108 * 179.97438 * 20 19 18 42 42 H 1.09002 * 109.47722 * 180.02562 * 21 20 19 43 43 H 1.09004 * 109.46998 * 59.99561 * 21 20 19 44 44 H 1.09001 * 109.47142 * 300.00176 * 22 20 19 45 45 H 1.09002 * 109.47097 * 180.02562 * 22 20 19 46 46 H 1.09000 * 109.47140 * 179.97438 * 23 22 20 47 47 H 1.08998 * 109.47533 * 179.97438 * 24 18 17 48 48 H 1.08996 * 109.47853 * 300.00202 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6151 1.3127 6 1 4.0790 -0.0863 0.5392 7 6 4.2303 -1.1929 2.3583 8 7 3.5763 -1.8372 3.2999 9 14 6.0921 -1.0617 2.4366 10 1 6.4709 0.1611 3.1893 11 1 6.6440 -2.2568 3.1237 12 1 6.6413 -0.9850 1.0590 13 7 2.0197 -0.6925 -1.1995 14 6 2.0825 0.2226 -2.3469 15 6 2.5951 -0.5332 -3.5745 16 6 2.5429 0.3851 -4.7972 17 6 3.4215 1.6132 -4.5507 18 6 4.8650 1.1673 -4.3091 19 6 5.3775 0.4115 -5.5367 20 6 4.4989 -0.8165 -5.7832 21 6 3.0554 -0.3707 -6.0249 22 6 4.5512 -1.7348 -4.5605 23 6 4.0386 -0.9790 -3.3329 24 6 4.9172 0.2491 -3.0864 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6054 -0.2619 2.1370 29 1 1.7515 -1.7716 1.2055 30 1 4.0607 -2.2440 4.0353 31 1 1.4496 -1.4979 -1.4101 32 1 2.7590 1.0462 -2.1181 33 1 1.0871 0.6164 -2.5525 34 1 1.9692 -1.4080 -3.7501 35 1 1.5145 0.7028 -4.9694 36 1 3.0563 2.1516 -3.6762 37 1 3.3839 2.2675 -5.4216 38 1 5.4910 2.0422 -4.1340 39 1 5.3404 1.0657 -6.4078 40 1 6.4061 0.0942 -5.3648 41 1 4.8638 -1.3547 -6.6581 42 1 2.4293 -1.2456 -6.2000 43 1 3.0183 0.2835 -6.8960 44 1 5.5796 -2.0524 -4.3884 45 1 3.9256 -2.6099 -4.7363 46 1 4.0754 -1.6333 -2.4619 47 1 5.9455 -0.0690 -2.9145 48 1 4.5521 0.7874 -2.2118 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695865016.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:08 Heat of formation + Delta-G solvation = -44.929800 kcal Electronic energy + Delta-G solvation = -23462.804888 eV Core-core repulsion = 20514.904433 eV Total energy + Delta-G solvation = -2947.900455 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.36897 -36.71193 -33.62903 -32.48730 -32.43517 -32.21009 -29.69549 -27.19371 -26.13019 -25.69169 -23.45533 -22.67357 -21.28848 -21.22189 -20.23196 -19.58716 -17.14025 -16.13541 -15.03376 -14.94377 -14.82258 -14.52594 -14.24710 -14.12474 -13.55985 -13.37731 -13.13534 -12.97532 -12.84607 -12.43551 -12.27325 -12.15274 -11.93799 -11.74024 -11.49456 -11.25099 -11.05595 -10.75118 -10.72772 -10.67474 -10.64884 -10.50730 -10.44417 -10.27894 -9.97519 -9.45677 -9.38486 -9.32835 -9.15501 -8.90240 -8.20040 -7.42540 -5.82322 -3.79182 3.41905 3.48193 3.53029 4.57012 4.61148 4.61320 4.66133 4.95545 5.21722 5.24952 5.31416 5.38395 5.40960 5.47427 5.49096 5.52544 5.55266 5.59637 5.76269 5.77332 5.79889 5.87669 5.93145 5.95836 6.01736 6.05737 6.06636 6.10600 6.13609 6.21099 6.24827 6.26159 6.29298 6.40057 6.42652 6.52440 6.65530 6.69168 6.75184 6.86798 6.93451 7.10686 7.65457 7.77322 8.11947 8.14240 8.27132 8.67255 9.26243 9.81707 11.29988 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.018206 B = 0.005738 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.601893 B = 4878.642220 C = 5829.420172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.090 3.910 3 H 0.061 0.939 4 C 0.033 3.967 5 C -0.482 4.482 6 H 0.058 0.942 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.886 3.114 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.274 1.274 13 N -0.660 5.660 14 C 0.062 3.938 15 C -0.069 4.069 16 C -0.080 4.080 17 C -0.107 4.107 18 C -0.086 4.086 19 C -0.105 4.105 20 C -0.085 4.085 21 C -0.104 4.104 22 C -0.110 4.110 23 C -0.071 4.071 24 C -0.107 4.107 25 H 0.054 0.946 26 H 0.036 0.964 27 H 0.050 0.950 28 H 0.015 0.985 29 H 0.016 0.984 30 H 0.256 0.744 31 H 0.328 0.672 32 H 0.073 0.927 33 H 0.012 0.988 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.091 0.909 47 H 0.055 0.945 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.260 4.210 -18.953 19.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.019 4.019 3 H 0.079 0.921 4 C -0.004 4.004 5 C -0.521 4.521 6 H 0.077 0.923 7 C -0.150 4.150 8 N -0.547 5.547 9 Si 0.715 3.285 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.199 1.199 13 N -0.290 5.290 14 C -0.068 4.068 15 C -0.088 4.088 16 C -0.099 4.099 17 C -0.144 4.144 18 C -0.105 4.105 19 C -0.143 4.143 20 C -0.103 4.103 21 C -0.142 4.142 22 C -0.147 4.147 23 C -0.090 4.090 24 C -0.145 4.145 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.033 0.967 29 H 0.034 0.966 30 H 0.066 0.934 31 H 0.145 0.855 32 H 0.092 0.908 33 H 0.030 0.970 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.109 0.891 47 H 0.074 0.926 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.552 4.199 -18.628 19.103 hybrid contribution 0.045 0.103 -0.072 0.133 sum -0.507 4.302 -18.699 19.195 Atomic orbital electron populations 1.22554 0.99792 1.01056 1.00430 1.21763 0.89672 0.98037 0.92476 0.92055 1.19107 0.96217 0.95331 0.89744 1.21136 0.91874 1.32518 1.06564 0.92349 1.24993 0.97785 0.96050 0.96144 1.69963 1.35081 1.37204 1.12430 0.86687 0.86743 0.77129 0.77978 1.21150 1.21634 1.19867 1.60527 1.57397 1.08499 1.02544 1.22115 0.97803 0.96174 0.90681 1.21071 0.96933 0.97406 0.93397 1.21045 0.98412 0.95526 0.94907 1.21541 0.95107 0.96797 1.01003 1.21060 0.96035 0.97864 0.95533 1.21514 0.98655 0.96573 0.97533 1.21033 0.95305 0.96185 0.97822 1.21503 0.96021 0.99500 0.97162 1.21583 1.00809 0.97483 0.94835 1.20925 0.93385 0.96884 0.97769 1.21534 0.99502 0.96305 0.97135 0.92669 0.94540 0.93136 0.96713 0.96594 0.93445 0.85519 0.90843 0.96975 0.91944 0.91924 0.91770 0.92764 0.91896 0.92712 0.92340 0.92063 0.92348 0.92561 0.92358 0.92451 0.89121 0.92600 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.06 9.16 37.16 0.34 -2.72 16 2 C 0.09 1.81 2.53 -67.71 -0.17 1.64 16 3 H 0.06 1.28 7.80 -51.93 -0.40 0.87 16 4 C 0.03 0.85 4.65 -27.88 -0.13 0.72 16 5 C -0.48 -13.56 8.84 -34.44 -0.30 -13.86 16 6 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.91 -27.67 13.29 55.43 0.74 -26.94 16 9 Si 0.89 22.27 29.54 -169.99 -5.02 17.24 16 10 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 12 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.66 -12.03 5.42 -106.73 -0.58 -12.61 16 14 C 0.06 0.94 4.16 -3.83 -0.02 0.93 16 15 C -0.07 -0.92 2.08 -90.62 -0.19 -1.11 16 16 C -0.08 -0.92 2.72 -90.62 -0.25 -1.17 16 17 C -0.11 -1.23 4.92 -26.73 -0.13 -1.36 16 18 C -0.09 -1.04 3.19 -90.62 -0.29 -1.33 16 19 C -0.11 -1.15 5.19 -26.73 -0.14 -1.28 16 20 C -0.09 -0.92 3.19 -90.62 -0.29 -1.21 16 21 C -0.10 -1.09 5.19 -26.73 -0.14 -1.23 16 22 C -0.11 -1.36 5.19 -26.73 -0.14 -1.50 16 23 C -0.07 -1.03 2.61 -90.62 -0.24 -1.26 16 24 C -0.11 -1.56 4.92 -26.73 -0.13 -1.70 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.04 0.55 7.45 -51.93 -0.39 0.16 16 27 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 28 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.33 5.69 8.47 -39.29 -0.33 5.35 16 32 H 0.07 1.20 4.74 -51.93 -0.25 0.95 16 33 H 0.01 0.18 7.44 -51.93 -0.39 -0.21 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.78 6.54 -51.93 -0.34 0.44 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.09 1.58 7.75 -51.93 -0.40 1.18 16 47 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.07 1.22 6.32 -51.93 -0.33 0.89 16 LS Contribution 346.42 15.07 5.22 5.22 Total: -1.00 -29.19 346.42 -11.08 -40.27 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -9.13 Total: 1.93 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: -2.31 Total: -25.11 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.16 Total: -39.55 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.19 -11.08 -40.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695865016.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.661 kcal (2) G-P(sol) polarization free energy of solvation -29.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds