Wall clock time and date at job start Mon Mar 30 2020 07:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.50699 * 109.47053 * 175.00035 * 4 2 1 6 6 H 1.08006 * 120.00127 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99929 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00323 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00031 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47223 * 90.00091 * 9 7 5 11 11 H 1.48502 * 109.46796 * 210.00133 * 9 7 5 12 12 H 1.48502 * 109.47239 * 329.99785 * 9 7 5 13 13 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 14 14 C 1.46899 * 111.00313 * 275.00230 * 13 2 1 15 15 C 1.52998 * 109.47303 * 179.97438 * 14 13 2 16 16 C 1.52993 * 109.47281 * 294.99922 * 15 14 13 17 17 C 1.52996 * 109.47145 * 299.99978 * 16 15 14 18 18 C 1.52994 * 109.47229 * 299.99727 * 17 16 15 19 19 C 1.52993 * 109.47437 * 300.00264 * 18 17 16 20 20 C 1.52996 * 109.47126 * 59.99673 * 19 18 17 21 21 C 1.52998 * 109.47134 * 300.00097 * 20 19 18 22 22 C 1.52995 * 109.47409 * 60.00449 * 20 19 18 23 23 C 1.52998 * 109.46986 * 174.99846 * 15 14 13 24 24 C 1.53002 * 109.47211 * 60.00261 * 18 17 16 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 1.08995 * 109.46750 * 294.99553 * 4 2 1 29 29 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 30 30 H 0.97000 * 120.00334 * 179.97438 * 8 7 5 31 31 H 1.00906 * 111.00118 * 38.95572 * 13 2 1 32 32 H 1.09003 * 109.46741 * 300.00007 * 14 13 2 33 33 H 1.09003 * 109.47153 * 59.99606 * 14 13 2 34 34 H 1.09003 * 109.46694 * 55.00173 * 15 14 13 35 35 H 1.09003 * 109.47021 * 59.99985 * 16 15 14 36 36 H 1.08999 * 109.47118 * 59.99978 * 17 16 15 37 37 H 1.09006 * 109.47108 * 179.97438 * 17 16 15 38 38 H 1.09002 * 109.47453 * 179.97438 * 18 17 16 39 39 H 1.09006 * 109.46963 * 299.99785 * 19 18 17 40 40 H 1.09003 * 109.47312 * 179.97438 * 19 18 17 41 41 H 1.08999 * 109.47118 * 180.02562 * 20 19 18 42 42 H 1.09002 * 109.47358 * 180.02562 * 21 20 19 43 43 H 1.09006 * 109.47208 * 300.00043 * 21 20 19 44 44 H 1.08997 * 109.47801 * 179.97438 * 22 20 19 45 45 H 1.09000 * 109.47041 * 59.99249 * 22 20 19 46 46 H 1.08996 * 109.47190 * 300.00038 * 23 15 14 47 47 H 1.08994 * 109.47611 * 180.02562 * 24 18 17 48 48 H 1.09002 * 109.47078 * 59.99248 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2304 -1.1933 -2.3579 8 7 3.5765 -1.8376 -3.2997 9 14 6.0920 -1.0609 -2.4369 10 1 6.7009 -2.2129 -1.7247 11 1 6.5290 -1.0694 -3.8562 12 1 6.5261 0.2048 -1.7929 13 7 2.0197 -0.6925 1.1993 14 6 2.0825 0.2225 2.3469 15 6 2.5952 -0.5333 3.5744 16 6 1.5827 -1.6098 3.9701 17 6 0.2413 -0.9518 4.2998 18 6 0.4252 0.0269 5.4613 19 6 0.9379 -0.7289 6.6888 20 6 2.2792 -1.3868 6.3591 21 6 2.0953 -2.3656 5.1976 22 6 3.2918 -0.3103 5.9634 23 6 2.7791 0.4455 4.7358 24 6 1.4377 1.1035 5.0656 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.7517 -1.7714 -1.2057 29 1 1.6054 -0.2616 -2.1371 30 1 4.0608 -2.2443 -4.0351 31 1 1.4496 -1.4980 1.4100 32 1 2.7589 1.0462 2.1181 33 1 1.0871 0.6162 2.5525 34 1 3.5508 -1.0020 3.3394 35 1 1.4516 -2.3071 3.1426 36 1 -0.1239 -0.4134 3.4253 37 1 -0.4802 -1.7189 4.5813 38 1 -0.5303 0.4960 5.6959 39 1 0.2165 -1.4959 6.9707 40 1 1.0693 -0.0315 7.5162 41 1 2.6443 -1.9256 7.2334 42 1 3.0508 -2.8348 4.9630 43 1 1.3739 -3.1326 5.4796 44 1 4.2476 -0.7790 5.7289 45 1 3.4228 0.3870 6.7908 46 1 3.5005 1.2124 4.4539 47 1 1.5691 1.8005 5.8932 48 1 1.0725 1.6419 4.1910 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695865020.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:10 Heat of formation + Delta-G solvation = -60.238110 kcal Electronic energy + Delta-G solvation = -23258.006780 eV Core-core repulsion = 20309.442507 eV Total energy + Delta-G solvation = -2948.564273 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.44025 -38.26829 -35.22640 -34.06557 -33.48782 -33.44295 -31.13113 -29.13262 -27.31010 -26.69999 -25.16783 -24.24367 -22.41516 -22.24584 -21.28716 -21.19437 -18.39886 -18.12395 -16.66605 -16.52911 -16.01495 -15.87572 -15.57720 -15.22849 -14.82802 -14.50145 -14.38695 -14.19123 -14.13704 -13.92673 -13.55213 -13.35198 -13.23194 -13.22523 -12.97783 -12.74599 -12.70858 -12.57274 -12.36129 -11.91122 -11.73334 -11.71334 -11.67143 -11.58375 -11.46037 -11.14547 -11.05825 -10.48597 -10.44718 -10.42469 -10.38779 -8.90022 -8.09335 -6.14014 1.40345 1.42028 1.52399 2.47297 3.22504 3.42399 3.63085 3.67987 3.72954 4.16255 4.23372 4.26416 4.30521 4.37409 4.38514 4.44818 4.48355 4.49485 4.52644 4.55639 4.56995 4.67265 4.78086 4.86444 4.90790 4.92785 4.97151 5.00896 5.13747 5.18961 5.21149 5.21380 5.23422 5.25465 5.27328 5.29766 5.33933 5.39466 5.51193 5.60614 5.66865 5.68227 5.72337 5.74614 5.90598 6.36471 6.54859 6.78492 6.99830 7.51372 9.02899 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.023481 B = 0.004574 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.142030 B = 6120.058646 C = 6673.473724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.099 3.901 3 H 0.054 0.946 4 C 0.038 3.962 5 C -0.497 4.497 6 H 0.053 0.947 7 C -0.007 4.007 8 N -0.941 5.941 9 Si 0.957 3.043 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.268 1.268 13 N -0.681 5.681 14 C 0.071 3.929 15 C -0.067 4.067 16 C -0.080 4.080 17 C -0.107 4.107 18 C -0.083 4.083 19 C -0.103 4.103 20 C -0.083 4.083 21 C -0.106 4.106 22 C -0.105 4.105 23 C -0.079 4.079 24 C -0.107 4.107 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.055 0.945 28 H -0.011 1.011 29 H -0.009 1.009 30 H 0.258 0.742 31 H 0.334 0.666 32 H 0.047 0.953 33 H 0.040 0.960 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.051 0.949 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.072 0.928 46 H 0.061 0.939 47 H 0.071 0.929 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.663 3.583 23.075 24.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.011 4.011 3 H 0.072 0.928 4 C 0.001 3.999 5 C -0.536 4.536 6 H 0.072 0.928 7 C -0.202 4.202 8 N -0.583 5.583 9 Si 0.783 3.217 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.192 1.192 13 N -0.312 5.312 14 C -0.058 4.058 15 C -0.086 4.086 16 C -0.099 4.099 17 C -0.144 4.144 18 C -0.101 4.101 19 C -0.140 4.140 20 C -0.102 4.102 21 C -0.143 4.143 22 C -0.142 4.142 23 C -0.098 4.098 24 C -0.144 4.144 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.007 0.993 29 H 0.009 0.991 30 H 0.067 0.933 31 H 0.153 0.847 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.091 0.909 46 H 0.080 0.920 47 H 0.089 0.911 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.964 3.587 22.759 23.799 hybrid contribution 0.150 -0.138 -0.743 0.771 sum -5.814 3.450 22.015 23.030 Atomic orbital electron populations 1.22394 0.96848 1.01611 1.01774 1.21431 0.91978 0.96648 0.91006 0.92781 1.18994 0.95116 0.94096 0.91727 1.21466 0.93418 1.32239 1.06437 0.92835 1.25861 1.02920 0.95703 0.95750 1.70095 1.37048 1.38119 1.13082 0.85567 0.80629 0.78572 0.76930 1.20383 1.21004 1.19212 1.60395 1.58101 1.09545 1.03198 1.22040 0.99024 0.94844 0.89909 1.21024 0.98333 0.95932 0.93344 1.21004 0.95167 0.96329 0.97400 1.21556 0.96197 0.98533 0.98161 1.21026 0.98484 0.95516 0.95060 1.21513 0.96168 0.99360 0.96949 1.21043 0.95828 0.95786 0.97502 1.21514 1.00640 0.97476 0.94707 1.21512 0.97891 0.97694 0.97111 1.21020 0.97459 0.96720 0.94589 1.21553 0.94489 0.97324 1.01026 0.91808 0.92984 0.92604 0.99252 0.99108 0.93283 0.84742 0.93456 0.94202 0.92945 0.92722 0.92896 0.91618 0.90647 0.91556 0.91131 0.90498 0.92983 0.91467 0.92806 0.90893 0.92046 0.91055 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.62 9.16 71.98 0.66 -4.96 16 2 C 0.10 4.13 2.53 44.92 0.11 4.25 16 3 H 0.05 2.32 7.80 -2.39 -0.02 2.30 16 4 C 0.04 2.06 4.65 29.85 0.14 2.19 16 5 C -0.50 -29.22 8.84 25.60 0.23 -28.99 16 6 H 0.05 3.13 7.74 -2.91 -0.02 3.10 16 7 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 8 N -0.94 -59.19 13.29 21.45 0.28 -58.90 16 9 Si 0.96 46.71 29.54 68.60 2.03 48.73 16 10 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 11 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 12 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 13 N -0.68 -25.89 5.96 -491.58 -2.93 -28.82 16 14 C 0.07 2.18 4.24 86.30 0.37 2.54 16 15 C -0.07 -1.79 2.14 -10.80 -0.02 -1.82 16 16 C -0.08 -1.89 2.49 -10.80 -0.03 -1.92 16 17 C -0.11 -2.17 4.92 30.59 0.15 -2.02 16 18 C -0.08 -1.41 3.19 -10.80 -0.03 -1.45 16 19 C -0.10 -1.54 5.19 30.59 0.16 -1.38 16 20 C -0.08 -1.41 3.19 -10.80 -0.03 -1.45 16 21 C -0.11 -2.15 5.19 30.59 0.16 -1.99 16 22 C -0.10 -1.94 5.19 30.59 0.16 -1.78 16 23 C -0.08 -1.70 2.72 -10.79 -0.03 -1.73 16 24 C -0.11 -1.98 4.92 30.60 0.15 -1.83 16 25 H 0.06 1.80 7.45 -2.39 -0.02 1.78 16 26 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 27 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 28 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 29 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 30 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 31 H 0.33 12.01 6.72 -89.69 -0.60 11.41 16 32 H 0.05 1.60 8.06 -2.39 -0.02 1.58 16 33 H 0.04 1.11 4.12 -2.39 -0.01 1.10 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.05 1.48 6.68 -2.39 -0.02 1.46 16 36 H 0.05 1.18 6.32 -2.39 -0.02 1.16 16 37 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 40 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 44 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.05 1.13 6.54 -2.39 -0.02 1.12 16 Total: -1.00 -64.88 344.15 2.28 -62.60 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.30 Total: 18.65 kcal Atomic # 6 Polarization: -44.86 SS G_CDS: 2.60 Total: -42.26 kcal Atomic # 7 Polarization: -85.08 SS G_CDS: -2.65 Total: -87.72 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.73 kcal Total: -64.88 2.28 -62.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695865020.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.363 kcal (2) G-P(sol) polarization free energy of solvation -64.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds