Wall clock time and date at job start Mon Mar 30 2020 07:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 110.99859 * 2 1 4 4 C 1.52998 * 109.47163 * 287.92672 * 3 2 1 5 5 C 1.52940 * 109.41197 * 179.75250 * 4 3 2 6 6 C 1.53189 * 109.44887 * 183.02430 * 5 4 3 7 7 C 1.53153 * 108.88056 * 303.43235 * 6 5 4 8 8 C 1.52809 * 117.74854 * 199.62727 * 7 6 5 9 9 C 1.52841 * 117.67296 * 268.50393 * 7 6 5 10 10 C 1.53150 * 115.01030 * 53.93589 * 7 6 5 11 11 C 1.52939 * 109.35541 * 300.07847 * 4 3 2 12 12 C 1.46901 * 110.99905 * 123.95339 * 2 1 3 13 13 C 1.53002 * 109.47414 * 71.86080 * 12 2 1 14 14 C 1.50701 * 115.54622 * 63.29654 * 13 12 2 15 15 H 1.08003 * 119.99816 * 266.77100 * 14 13 12 16 16 C 1.37876 * 119.99886 * 86.77537 * 14 13 12 17 17 N 1.31520 * 120.00061 * 178.68989 * 16 14 13 18 18 Si 1.86800 * 120.00250 * 358.68357 * 16 14 13 19 19 H 1.48504 * 109.46665 * 91.24525 * 18 16 14 20 20 H 1.48490 * 109.47444 * 211.24730 * 18 16 14 21 21 H 1.48504 * 109.47171 * 331.25301 * 18 16 14 22 22 C 1.52996 * 117.49938 * 277.62834 * 13 12 2 23 23 C 1.52997 * 117.49842 * 208.96790 * 13 12 2 24 24 H 1.09002 * 109.46660 * 54.94153 * 1 2 3 25 25 H 1.09005 * 109.46651 * 174.93318 * 1 2 3 26 26 H 1.09002 * 109.47304 * 294.93725 * 1 2 3 27 27 H 1.09003 * 109.47041 * 167.92763 * 3 2 1 28 28 H 1.09002 * 109.47219 * 47.92706 * 3 2 1 29 29 H 1.09007 * 109.40995 * 59.89702 * 4 3 2 30 30 H 1.08995 * 109.47439 * 63.03390 * 5 4 3 31 31 H 1.08995 * 109.48329 * 303.01939 * 5 4 3 32 32 H 1.08994 * 109.56878 * 183.60708 * 6 5 4 33 33 H 1.09001 * 109.56744 * 63.24610 * 6 5 4 34 34 H 1.09007 * 117.50094 * 0.14107 * 8 7 6 35 35 H 1.08997 * 117.50154 * 215.10846 * 8 7 6 36 36 H 1.08998 * 117.50542 * 144.78331 * 9 7 6 37 37 H 1.09003 * 117.53186 * 359.71885 * 9 7 6 38 38 H 1.08998 * 109.56575 * 65.88439 * 10 7 6 39 39 H 1.08992 * 109.56782 * 186.24536 * 10 7 6 40 40 H 1.08999 * 109.47288 * 296.93620 * 11 4 3 41 41 H 1.08995 * 109.47733 * 56.94755 * 11 4 3 42 42 H 1.09002 * 109.47114 * 191.86845 * 12 2 1 43 43 H 1.09008 * 109.47193 * 311.86079 * 12 2 1 44 44 H 0.96997 * 120.00028 * 179.97438 * 17 16 14 45 45 H 1.09003 * 117.50136 * 0.02562 * 22 13 12 46 46 H 1.08996 * 117.49783 * 145.01706 * 22 13 12 47 47 H 1.09003 * 117.49320 * 214.97660 * 23 13 12 48 48 H 1.08993 * 117.50268 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.7637 2.0067 -1.3724 5 6 2.3067 3.4365 -1.3690 6 6 2.0078 4.0988 -2.7176 7 6 2.6122 3.2432 -3.8348 8 6 2.8460 3.9063 -5.1915 9 6 4.0347 3.5699 -4.2885 10 6 2.1894 1.7712 -3.8238 11 6 2.4824 1.1815 -2.4408 12 6 1.9954 -0.7660 1.1376 13 6 1.7590 -2.2589 0.9005 14 6 2.4705 -2.8486 -0.2899 15 1 1.9696 -2.9049 -1.2451 16 6 3.7610 -3.3162 -0.1596 17 7 4.3729 -3.8543 -1.1920 18 14 4.6405 -3.1854 1.4832 19 1 4.4052 -4.4225 2.2704 20 1 6.0974 -3.0150 1.2526 21 1 4.1176 -2.0149 2.2328 22 6 0.3781 -2.8192 1.2470 23 6 1.5829 -3.1505 2.1313 24 1 -0.3633 0.5903 -0.8412 25 1 -0.3633 -1.0237 -0.0908 26 1 -0.3634 0.4333 0.9319 27 1 3.0639 1.3506 0.2149 28 1 1.4828 1.9575 0.7628 29 1 0.6952 2.0255 -1.5872 30 1 3.3840 3.4156 -1.2053 31 1 1.8288 4.0049 -0.5712 32 1 2.4495 5.0950 -2.7409 33 1 0.9292 4.1724 -2.8571 34 1 2.5718 4.9565 -5.2924 35 1 2.7015 3.2948 -6.0821 36 1 4.6723 2.7371 -4.5851 37 1 4.5429 4.3987 -3.7956 38 1 1.1225 1.6964 -4.0340 39 1 2.7516 1.2243 -4.5806 40 1 3.5564 1.2044 -2.2562 41 1 2.1291 0.1511 -2.4029 42 1 3.0646 -0.5788 1.2381 43 1 1.4854 -0.4578 2.0504 44 1 5.2808 -4.1830 -1.1004 45 1 -0.3621 -2.1242 1.6435 46 1 -0.0155 -3.6146 0.6142 47 1 1.9813 -4.1638 2.0798 48 1 1.6359 -2.6736 3.1099 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696211394.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:47 Heat of formation + Delta-G solvation = 37.482212 kcal Electronic energy + Delta-G solvation = -22829.420416 eV Core-core repulsion = 19885.093614 eV Total energy + Delta-G solvation = -2944.326802 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.45189 -37.90908 -36.02017 -33.87530 -31.91388 -30.67082 -28.77742 -27.27719 -25.46373 -24.55688 -22.66462 -22.43131 -21.54453 -21.52368 -19.78901 -18.82529 -18.44857 -16.14868 -15.28624 -15.19739 -15.04888 -14.82749 -14.54377 -13.96792 -13.66047 -13.36219 -13.19490 -13.00307 -12.61718 -12.52121 -12.08183 -11.98802 -11.93033 -11.53487 -11.39642 -11.28292 -11.08684 -10.95262 -10.81354 -10.80960 -10.43049 -10.34895 -10.13064 -9.90964 -9.80148 -9.71937 -9.50590 -9.33378 -8.88263 -8.44278 -8.36979 -7.47771 -5.95120 -3.93231 3.36016 3.45245 3.48644 3.82079 4.43013 4.53883 4.68261 4.82283 4.91478 5.05913 5.09988 5.19276 5.31274 5.36977 5.50802 5.52682 5.64847 5.71857 5.75964 5.81578 5.84072 5.88772 5.92418 5.92804 5.99051 6.04696 6.10337 6.11664 6.15834 6.23764 6.24723 6.27604 6.30806 6.38277 6.43513 6.47177 6.51627 6.62730 6.65207 6.79497 6.85390 7.08250 7.14618 7.26330 7.76233 7.87776 7.95010 8.69545 9.11212 9.69033 11.17611 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.019971 B = 0.005049 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.703566 B = 5543.839535 C = 6205.817761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.511 5.511 3 C 0.059 3.941 4 C -0.076 4.076 5 C -0.111 4.111 6 C -0.077 4.077 7 C -0.116 4.116 8 C -0.183 4.183 9 C -0.175 4.175 10 C -0.081 4.081 11 C -0.102 4.102 12 C 0.096 3.904 13 C 0.015 3.985 14 C -0.455 4.455 15 H 0.078 0.922 16 C 0.074 3.926 17 N -0.904 5.904 18 Si 0.876 3.124 19 H -0.282 1.282 20 H -0.297 1.297 21 H -0.262 1.262 22 C -0.184 4.184 23 C -0.206 4.206 24 H 0.057 0.943 25 H 0.078 0.922 26 H 0.008 0.992 27 H 0.068 0.932 28 H 0.020 0.980 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.091 0.909 42 H 0.068 0.932 43 H 0.005 0.995 44 H 0.261 0.739 45 H 0.068 0.932 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.937 15.141 -1.419 15.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.234 5.234 3 C -0.069 4.069 4 C -0.095 4.095 5 C -0.149 4.149 6 C -0.114 4.114 7 C -0.116 4.116 8 C -0.220 4.220 9 C -0.212 4.212 10 C -0.119 4.119 11 C -0.140 4.140 12 C -0.032 4.032 13 C 0.014 3.986 14 C -0.493 4.493 15 H 0.096 0.904 16 C -0.127 4.127 17 N -0.543 5.543 18 Si 0.705 3.295 19 H -0.209 1.209 20 H -0.224 1.224 21 H -0.187 1.187 22 C -0.221 4.221 23 C -0.244 4.244 24 H 0.075 0.925 25 H 0.096 0.904 26 H 0.026 0.974 27 H 0.086 0.914 28 H 0.038 0.962 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.109 0.891 42 H 0.086 0.914 43 H 0.023 0.977 44 H 0.071 0.929 45 H 0.086 0.914 46 H 0.103 0.897 47 H 0.105 0.895 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.597 14.824 -1.909 15.638 hybrid contribution 0.395 0.435 1.670 1.770 sum -4.202 15.259 -0.239 15.829 Atomic orbital electron populations 1.22480 0.88623 1.02663 0.98433 1.61673 1.06565 1.11070 1.44075 1.22169 0.99912 0.89289 0.95562 1.21060 0.99845 0.93340 0.95239 1.21548 1.01234 0.95987 0.96170 1.21090 1.00099 0.96838 0.93375 1.21555 0.98524 0.96626 0.94854 1.22975 1.03691 1.00883 0.94453 1.22983 0.91166 1.03170 1.03889 1.21191 1.00650 0.91430 0.98611 1.21437 1.00205 1.00681 0.91635 1.21914 0.98759 0.94192 0.88311 1.19390 0.95216 0.89600 0.94419 1.20127 0.97833 1.36948 0.94352 0.90405 1.24912 0.97110 0.94724 0.95952 1.69894 1.13087 1.41229 1.30053 0.86925 0.78208 0.79072 0.85295 1.20857 1.22405 1.18653 1.22846 0.91572 1.03623 1.04066 1.23009 1.04845 1.01763 0.94807 0.92461 0.90374 0.97373 0.91367 0.96181 0.91716 0.91966 0.92574 0.92452 0.91849 0.89381 0.89083 0.88875 0.89321 0.92026 0.92118 0.92489 0.89053 0.91400 0.97690 0.92948 0.91353 0.89704 0.89510 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 8.80 60.07 0.53 0.96 16 2 N -0.51 -9.54 3.71 -242.90 -0.90 -10.45 16 3 C 0.06 0.94 4.41 -3.82 -0.02 0.92 16 4 C -0.08 -1.06 2.08 -90.68 -0.19 -1.25 16 5 C -0.11 -1.32 5.21 -26.66 -0.14 -1.46 16 6 C -0.08 -0.84 5.67 -26.55 -0.15 -0.99 16 7 C -0.12 -1.36 1.97 -154.53 -0.31 -1.67 16 8 C -0.18 -1.93 9.99 -26.82 -0.27 -2.19 16 9 C -0.18 -1.98 9.93 -26.80 -0.27 -2.24 16 10 C -0.08 -1.10 5.67 -26.56 -0.15 -1.25 16 11 C -0.10 -1.61 5.09 -26.67 -0.14 -1.74 16 12 C 0.10 1.99 4.50 -3.82 -0.02 1.97 16 13 C 0.02 0.34 0.72 -155.66 -0.11 0.23 16 14 C -0.45 -12.46 9.30 -34.44 -0.32 -12.78 16 15 H 0.08 2.37 8.06 -52.48 -0.42 1.95 16 16 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 17 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 18 Si 0.88 21.81 24.89 -169.99 -4.23 17.57 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 21 H -0.26 -6.16 5.70 56.52 0.32 -5.83 16 22 C -0.18 -3.72 8.17 -26.70 -0.22 -3.94 16 23 C -0.21 -4.42 7.61 -26.70 -0.20 -4.63 16 24 H 0.06 0.85 6.53 -51.93 -0.34 0.51 16 25 H 0.08 1.38 5.67 -51.93 -0.29 1.08 16 26 H 0.01 0.12 8.09 -51.93 -0.42 -0.30 16 27 H 0.07 1.14 7.73 -51.93 -0.40 0.74 16 28 H 0.02 0.30 8.05 -51.93 -0.42 -0.12 16 29 H 0.06 0.90 6.67 -51.93 -0.35 0.55 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.83 8.14 -51.92 -0.42 0.40 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.84 8.09 -51.93 -0.42 0.42 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.09 1.74 7.50 -51.93 -0.39 1.35 16 42 H 0.07 1.50 6.17 -51.93 -0.32 1.18 16 43 H 0.01 0.10 7.98 -51.92 -0.41 -0.32 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.07 1.23 7.38 -51.93 -0.38 0.85 16 46 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 47 H 0.09 1.96 7.28 -51.93 -0.38 1.59 16 48 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 358.24 15.07 5.40 5.40 Total: -1.00 -28.64 358.24 -10.26 -38.90 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -9.23 Total: 3.37 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: -2.06 Total: -28.07 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: -0.13 Total: -37.17 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.23 Total: 17.57 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.64 -10.26 -38.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696211394.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.381 kcal (2) G-P(sol) polarization free energy of solvation -28.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds