Wall clock time and date at job start Mon Mar 30 2020 07:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00242 * 2 1 4 4 C 1.52992 * 109.47761 * 199.62683 * 3 2 1 5 5 H 1.09007 * 109.47125 * 305.53676 * 4 3 2 6 6 C 1.52940 * 109.47510 * 65.54128 * 4 3 2 7 7 C 1.52947 * 109.82281 * 182.98163 * 6 4 3 8 8 C 1.53181 * 109.44709 * 297.01754 * 7 6 4 9 9 C 1.53143 * 108.88583 * 56.57247 * 8 7 6 10 10 C 1.52840 * 117.68069 * 91.48964 * 9 8 7 11 11 C 1.52810 * 117.75334 * 160.37603 * 9 8 7 12 12 C 1.53153 * 115.00695 * 306.06161 * 9 8 7 13 13 C 1.46905 * 111.00367 * 123.95427 * 2 1 3 14 14 C 1.53003 * 109.46826 * 71.79527 * 13 2 1 15 15 C 1.50700 * 115.54946 * 39.37424 * 14 13 2 16 16 H 1.08003 * 119.99277 * 272.59291 * 15 14 13 17 17 C 1.37879 * 120.00386 * 92.59600 * 15 14 13 18 18 N 1.31507 * 119.99686 * 4.27062 * 17 15 14 19 19 Si 1.86796 * 119.99792 * 184.27237 * 17 15 14 20 20 H 1.48492 * 109.47679 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46801 * 120.00275 * 19 17 15 22 22 H 1.48501 * 109.47066 * 239.99446 * 19 17 15 23 23 C 1.53000 * 117.49597 * 253.65953 * 14 13 2 24 24 C 1.53002 * 60.00041 * 252.51545 * 23 14 13 25 25 H 1.09000 * 109.47038 * 54.87149 * 1 2 3 26 26 H 1.09002 * 109.46666 * 174.86935 * 1 2 3 27 27 H 1.08997 * 109.46992 * 294.86712 * 1 2 3 28 28 H 1.09006 * 109.46695 * 79.61778 * 3 2 1 29 29 H 1.09006 * 109.47110 * 319.62990 * 3 2 1 30 30 H 1.08996 * 109.40748 * 62.87670 * 6 4 3 31 31 H 1.08999 * 109.41049 * 303.09283 * 6 4 3 32 32 H 1.08993 * 109.47934 * 177.02152 * 7 6 4 33 33 H 1.09004 * 109.47392 * 57.00956 * 7 6 4 34 34 H 1.08998 * 109.56793 * 296.74927 * 8 7 6 35 35 H 1.09007 * 109.66638 * 176.45117 * 8 7 6 36 36 H 1.08998 * 117.50383 * 0.27449 * 10 9 8 37 37 H 1.09001 * 117.50571 * 215.22297 * 10 9 8 38 38 H 1.08997 * 117.50259 * 144.88831 * 11 9 8 39 39 H 1.09004 * 117.52053 * 359.83480 * 11 9 8 40 40 H 1.08996 * 109.56998 * 173.75605 * 12 9 8 41 41 H 1.09006 * 109.56198 * 294.10996 * 12 9 8 42 42 H 1.08995 * 109.47243 * 191.79945 * 13 2 1 43 43 H 1.08997 * 109.46814 * 311.79952 * 13 2 1 44 44 H 0.96999 * 120.00408 * 185.00012 * 18 17 15 45 45 H 1.09000 * 117.50311 * 0.02562 * 23 14 13 46 46 H 1.09005 * 117.49248 * 145.02555 * 23 14 13 47 47 H 1.09002 * 117.49801 * 252.51399 * 24 23 14 48 48 H 1.08990 * 117.50009 * 107.49287 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.4466 1.3608 -0.4845 5 1 4.0268 0.6646 0.1213 6 6 3.4920 0.9226 -1.9491 7 6 4.9446 0.8375 -2.4202 8 6 5.5850 2.2274 -2.3522 9 6 5.4614 2.7607 -0.9220 10 6 6.6102 2.4741 0.0444 11 6 6.4013 3.8891 -0.4996 12 6 4.0390 2.7673 -0.3541 13 6 1.9955 -0.7660 1.1376 14 6 1.7576 -2.2588 0.9011 15 6 1.9641 -2.7336 -0.5142 16 1 1.1496 -2.6912 -1.2222 17 6 3.1926 -3.2223 -0.9051 18 7 4.1593 -3.3527 -0.0231 19 14 3.4839 -3.6991 -2.6876 20 1 2.2469 -3.4583 -3.4730 21 1 4.5906 -2.8803 -3.2444 22 1 3.8463 -5.1373 -2.7624 23 6 0.6589 -2.9376 1.7214 24 6 2.1303 -3.2211 2.0307 25 1 -0.3633 0.5913 -0.8405 26 1 -0.3633 -1.0236 -0.0919 27 1 -0.3633 0.4321 0.9324 28 1 1.9528 1.7770 1.0109 29 1 1.3947 1.9913 -0.6657 30 1 2.9546 1.6472 -2.5607 31 1 3.0207 -0.0551 -2.0494 32 1 4.9729 0.4743 -3.4474 33 1 5.4958 0.1516 -1.7769 34 1 5.0708 2.9002 -3.0385 35 1 6.6377 2.1601 -2.6271 36 1 7.4600 1.9083 -0.3375 37 1 6.3563 2.2938 1.0890 38 1 6.0099 4.6397 0.1871 39 1 7.1139 4.2544 -1.2391 40 1 4.0667 3.0559 0.6965 41 1 3.4262 3.4747 -0.9129 42 1 3.0648 -0.5798 1.2373 43 1 1.4863 -0.4571 2.0504 44 1 5.0442 -3.6272 -0.3103 45 1 0.1053 -2.3207 2.4293 46 1 0.0850 -3.7279 1.2374 47 1 2.5244 -4.1979 1.7501 48 1 2.5449 -2.7908 2.9421 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696224299.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:27 Heat of formation + Delta-G solvation = 34.413231 kcal Electronic energy + Delta-G solvation = -23348.248160 eV Core-core repulsion = 20403.788277 eV Total energy + Delta-G solvation = -2944.459883 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.33450 -37.51431 -35.55576 -33.91353 -31.67300 -31.12059 -27.24058 -26.77090 -26.02576 -25.03233 -22.38017 -22.07148 -21.41205 -20.92397 -19.59346 -18.82832 -18.32558 -15.88178 -15.34158 -14.99505 -14.64290 -14.50038 -14.28014 -13.89655 -13.53589 -13.44957 -13.12722 -12.83167 -12.44664 -12.31027 -11.75266 -11.66302 -11.44666 -11.43686 -11.15200 -11.11833 -10.87532 -10.84661 -10.63795 -10.56228 -10.50499 -10.32574 -10.08077 -9.87756 -9.71598 -9.61749 -9.25476 -9.18599 -8.82893 -8.16052 -7.88031 -7.28193 -5.81942 -3.82769 3.39370 3.48084 3.52435 3.90078 4.56858 4.65591 4.82973 4.95511 5.04870 5.15249 5.39735 5.44296 5.49124 5.55497 5.63789 5.70936 5.79192 5.85223 5.86605 5.92562 6.02241 6.03108 6.06369 6.11445 6.17003 6.21322 6.24031 6.29148 6.33042 6.35988 6.39033 6.57364 6.60401 6.64639 6.70476 6.71739 6.78761 6.85417 7.02926 7.06707 7.20960 7.26049 7.54633 7.71910 8.00935 8.09096 8.13982 8.68010 9.14075 9.78579 11.26586 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.015343 B = 0.006789 C = 0.005685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.450755 B = 4123.412702 C = 4923.703238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.507 5.507 3 C 0.061 3.939 4 C -0.073 4.073 5 H 0.077 0.923 6 C -0.102 4.102 7 C -0.117 4.117 8 C -0.079 4.079 9 C -0.112 4.112 10 C -0.173 4.173 11 C -0.184 4.184 12 C -0.075 4.075 13 C 0.104 3.896 14 C 0.047 3.953 15 C -0.449 4.449 16 H 0.056 0.944 17 C 0.072 3.928 18 N -0.887 5.887 19 Si 0.877 3.123 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.291 1.291 23 C -0.223 4.223 24 C -0.146 4.146 25 H 0.051 0.949 26 H 0.075 0.925 27 H 0.005 0.995 28 H 0.019 0.981 29 H 0.060 0.940 30 H 0.045 0.955 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.067 0.933 43 H -0.001 1.001 44 H 0.254 0.746 45 H 0.056 0.944 46 H 0.073 0.927 47 H 0.089 0.911 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.907 12.286 -0.817 12.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.230 5.230 3 C -0.068 4.068 4 C -0.092 4.092 5 H 0.095 0.905 6 C -0.139 4.139 7 C -0.155 4.155 8 C -0.116 4.116 9 C -0.112 4.112 10 C -0.210 4.210 11 C -0.221 4.221 12 C -0.113 4.113 13 C -0.024 4.024 14 C 0.046 3.954 15 C -0.487 4.487 16 H 0.074 0.926 17 C -0.129 4.129 18 N -0.526 5.526 19 Si 0.706 3.294 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.218 1.218 23 C -0.260 4.260 24 C -0.184 4.184 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.023 0.977 28 H 0.037 0.963 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.017 0.983 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.092 0.908 47 H 0.107 0.893 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.225 11.935 -1.231 12.061 hybrid contribution 0.132 0.191 -0.092 0.250 sum 1.357 12.126 -1.324 12.273 Atomic orbital electron populations 1.22280 0.88702 1.02383 0.97878 1.61737 1.06179 1.10483 1.44596 1.22112 0.95862 0.90809 0.97988 1.21044 0.95148 0.95144 0.97856 0.90457 1.21379 0.95127 1.03029 0.94371 1.21517 0.97387 0.95775 1.00779 1.21148 0.99925 0.97159 0.93363 1.21458 0.92136 1.01684 0.95930 1.22977 1.00463 0.98248 0.99272 1.22975 1.03398 0.91900 1.03782 1.21182 0.92946 0.97782 0.99353 1.21724 0.98454 0.94747 0.87487 1.18873 0.95571 0.88157 0.92764 1.20174 0.96677 1.38475 0.93355 0.92591 1.24818 0.96624 0.95285 0.96185 1.70016 1.01838 1.48491 1.32226 0.86778 0.78249 0.77674 0.86728 1.19900 1.21002 1.21770 1.23123 0.92370 1.05004 1.05491 1.22438 0.94376 1.02767 0.98842 0.93053 0.90660 0.97685 0.96322 0.92129 0.93656 0.89137 0.92710 0.91686 0.92087 0.92668 0.89112 0.89001 0.89287 0.89336 0.92575 0.92053 0.91471 0.98313 0.93638 0.92546 0.90794 0.89251 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 9.36 60.06 0.56 1.20 16 2 N -0.51 -9.93 3.39 -242.91 -0.82 -10.75 16 3 C 0.06 1.01 4.37 -3.83 -0.02 0.99 16 4 C -0.07 -1.21 2.24 -90.57 -0.20 -1.41 16 5 H 0.08 1.52 6.63 -51.92 -0.34 1.17 16 6 C -0.10 -1.75 5.03 -26.79 -0.13 -1.89 16 7 C -0.12 -1.91 5.93 -26.66 -0.16 -2.07 16 8 C -0.08 -1.07 5.67 -26.56 -0.15 -1.22 16 9 C -0.11 -1.49 1.97 -154.54 -0.31 -1.80 16 10 C -0.17 -2.24 9.93 -26.79 -0.27 -2.51 16 11 C -0.18 -2.11 9.99 -26.81 -0.27 -2.38 16 12 C -0.07 -1.03 4.96 -26.56 -0.13 -1.16 16 13 C 0.10 2.25 4.87 -3.82 -0.02 2.23 16 14 C 0.05 1.13 1.13 -155.66 -0.18 0.96 16 15 C -0.45 -11.85 8.19 -34.44 -0.28 -12.13 16 16 H 0.06 1.52 7.82 -52.48 -0.41 1.11 16 17 C 0.07 1.93 5.41 -17.82 -0.10 1.83 16 18 N -0.89 -24.74 12.00 55.43 0.67 -24.07 16 19 Si 0.88 21.29 29.54 -169.99 -5.02 16.27 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 C -0.22 -4.91 9.64 -26.73 -0.26 -5.17 16 24 C -0.15 -3.50 8.90 -26.73 -0.24 -3.74 16 25 H 0.05 0.81 7.95 -51.93 -0.41 0.39 16 26 H 0.07 1.45 7.31 -51.93 -0.38 1.07 16 27 H 0.00 0.08 8.09 -51.93 -0.42 -0.34 16 28 H 0.02 0.30 8.00 -51.93 -0.42 -0.11 16 29 H 0.06 0.92 7.81 -51.93 -0.41 0.52 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.89 7.68 -51.93 -0.40 1.49 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.70 8.10 -51.92 -0.42 0.28 16 36 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 1.57 6.47 -51.93 -0.34 1.23 16 43 H 0.00 -0.02 7.82 -51.93 -0.41 -0.43 16 44 H 0.25 6.89 8.32 -40.82 -0.34 6.55 16 45 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 46 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 47 H 0.09 2.34 7.71 -51.93 -0.40 1.93 16 48 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 369.30 15.07 5.57 5.57 Total: -1.00 -26.78 369.30 -11.13 -37.91 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -9.38 Total: 3.32 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: -2.14 Total: -28.24 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: -0.16 Total: -34.82 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -26.78 -11.13 -37.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696224299.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.323 kcal (2) G-P(sol) polarization free energy of solvation -26.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds