Wall clock time and date at job start Mon Mar 30 2020 07:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00242 * 2 1 4 4 C 1.52992 * 109.47761 * 199.62683 * 3 2 1 5 5 H 1.09007 * 109.47125 * 305.53676 * 4 3 2 6 6 C 1.52940 * 109.47510 * 65.54128 * 4 3 2 7 7 C 1.52947 * 109.82281 * 182.98163 * 6 4 3 8 8 C 1.53181 * 109.44709 * 297.01754 * 7 6 4 9 9 C 1.53143 * 108.88583 * 56.57247 * 8 7 6 10 10 C 1.52840 * 117.68069 * 91.48964 * 9 8 7 11 11 C 1.52810 * 117.75334 * 160.37603 * 9 8 7 12 12 C 1.53153 * 115.00695 * 306.06161 * 9 8 7 13 13 C 1.46905 * 111.00367 * 123.95427 * 2 1 3 14 14 C 1.53003 * 109.46826 * 71.79527 * 13 2 1 15 15 C 1.50700 * 115.54946 * 39.37424 * 14 13 2 16 16 H 1.08003 * 119.99277 * 272.59291 * 15 14 13 17 17 C 1.37879 * 120.00386 * 92.59600 * 15 14 13 18 18 N 1.31507 * 119.99686 * 4.27062 * 17 15 14 19 19 Si 1.86796 * 119.99792 * 184.27237 * 17 15 14 20 20 H 1.48492 * 109.47679 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46801 * 120.00275 * 19 17 15 22 22 H 1.48501 * 109.47066 * 239.99446 * 19 17 15 23 23 C 1.53000 * 117.49597 * 253.65953 * 14 13 2 24 24 C 1.53002 * 60.00041 * 252.51545 * 23 14 13 25 25 H 1.09000 * 109.47038 * 54.87149 * 1 2 3 26 26 H 1.09002 * 109.46666 * 174.86935 * 1 2 3 27 27 H 1.08997 * 109.46992 * 294.86712 * 1 2 3 28 28 H 1.09006 * 109.46695 * 79.61778 * 3 2 1 29 29 H 1.09006 * 109.47110 * 319.62990 * 3 2 1 30 30 H 1.08996 * 109.40748 * 62.87670 * 6 4 3 31 31 H 1.08999 * 109.41049 * 303.09283 * 6 4 3 32 32 H 1.08993 * 109.47934 * 177.02152 * 7 6 4 33 33 H 1.09004 * 109.47392 * 57.00956 * 7 6 4 34 34 H 1.08998 * 109.56793 * 296.74927 * 8 7 6 35 35 H 1.09007 * 109.66638 * 176.45117 * 8 7 6 36 36 H 1.08998 * 117.50383 * 0.27449 * 10 9 8 37 37 H 1.09001 * 117.50571 * 215.22297 * 10 9 8 38 38 H 1.08997 * 117.50259 * 144.88831 * 11 9 8 39 39 H 1.09004 * 117.52053 * 359.83480 * 11 9 8 40 40 H 1.08996 * 109.56998 * 173.75605 * 12 9 8 41 41 H 1.09006 * 109.56198 * 294.10996 * 12 9 8 42 42 H 1.08995 * 109.47243 * 191.79945 * 13 2 1 43 43 H 1.08997 * 109.46814 * 311.79952 * 13 2 1 44 44 H 0.96999 * 120.00408 * 185.00012 * 18 17 15 45 45 H 1.09000 * 117.50311 * 0.02562 * 23 14 13 46 46 H 1.09005 * 117.49248 * 145.02555 * 23 14 13 47 47 H 1.09002 * 117.49801 * 252.51399 * 24 23 14 48 48 H 1.08990 * 117.50009 * 107.49287 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.4466 1.3608 -0.4845 5 1 4.0268 0.6646 0.1213 6 6 3.4920 0.9226 -1.9491 7 6 4.9446 0.8375 -2.4202 8 6 5.5850 2.2274 -2.3522 9 6 5.4614 2.7607 -0.9220 10 6 6.6102 2.4741 0.0444 11 6 6.4013 3.8891 -0.4996 12 6 4.0390 2.7673 -0.3541 13 6 1.9955 -0.7660 1.1376 14 6 1.7576 -2.2588 0.9011 15 6 1.9641 -2.7336 -0.5142 16 1 1.1496 -2.6912 -1.2222 17 6 3.1926 -3.2223 -0.9051 18 7 4.1593 -3.3527 -0.0231 19 14 3.4839 -3.6991 -2.6876 20 1 2.2469 -3.4583 -3.4730 21 1 4.5906 -2.8803 -3.2444 22 1 3.8463 -5.1373 -2.7624 23 6 0.6589 -2.9376 1.7214 24 6 2.1303 -3.2211 2.0307 25 1 -0.3633 0.5913 -0.8405 26 1 -0.3633 -1.0236 -0.0919 27 1 -0.3633 0.4321 0.9324 28 1 1.9528 1.7770 1.0109 29 1 1.3947 1.9913 -0.6657 30 1 2.9546 1.6472 -2.5607 31 1 3.0207 -0.0551 -2.0494 32 1 4.9729 0.4743 -3.4474 33 1 5.4958 0.1516 -1.7769 34 1 5.0708 2.9002 -3.0385 35 1 6.6377 2.1601 -2.6271 36 1 7.4600 1.9083 -0.3375 37 1 6.3563 2.2938 1.0890 38 1 6.0099 4.6397 0.1871 39 1 7.1139 4.2544 -1.2391 40 1 4.0667 3.0559 0.6965 41 1 3.4262 3.4747 -0.9129 42 1 3.0648 -0.5798 1.2373 43 1 1.4863 -0.4571 2.0504 44 1 5.0442 -3.6272 -0.3103 45 1 0.1053 -2.3207 2.4293 46 1 0.0850 -3.7279 1.2374 47 1 2.5244 -4.1979 1.7501 48 1 2.5449 -2.7908 2.9421 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696224299.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:26 Heat of formation + Delta-G solvation = 23.745673 kcal Electronic energy + Delta-G solvation = -23348.710740 eV Core-core repulsion = 20403.788277 eV Total energy + Delta-G solvation = -2944.922463 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.51569 -39.11672 -37.11544 -35.25393 -33.75035 -32.39359 -28.44861 -28.39541 -27.52432 -26.89853 -23.47500 -23.36466 -22.80518 -22.69321 -21.07370 -20.60033 -19.47477 -17.82749 -16.66490 -16.41984 -16.22086 -15.96673 -15.85023 -15.46964 -14.93800 -14.81542 -14.67032 -14.17212 -14.05153 -13.53168 -13.36160 -13.17744 -12.85235 -12.80659 -12.71554 -12.60111 -12.43252 -12.36308 -12.28586 -12.18272 -11.91794 -11.86567 -11.75950 -11.30792 -11.17703 -10.91170 -10.82720 -10.72455 -10.31644 -10.19086 -9.78085 -8.77510 -7.92518 -5.96284 1.40776 1.45274 1.53651 2.53217 2.89370 3.26518 3.36642 3.62370 3.74251 3.83250 3.96576 4.05657 4.21230 4.30978 4.37270 4.40914 4.50549 4.52993 4.60992 4.64130 4.69088 4.74135 4.77852 4.81264 4.84228 4.86660 4.92101 4.99747 5.02331 5.04005 5.06714 5.12167 5.15169 5.16500 5.28509 5.29570 5.35622 5.37056 5.42633 5.53962 5.69163 5.72871 5.75039 5.80268 5.94187 6.43239 6.61188 6.69105 7.04268 7.66625 9.15218 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.015343 B = 0.006789 C = 0.005685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.450755 B = 4123.412702 C = 4923.703238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.528 5.528 3 C 0.064 3.936 4 C -0.066 4.066 5 H 0.036 0.964 6 C -0.096 4.096 7 C -0.116 4.116 8 C -0.071 4.071 9 C -0.128 4.128 10 C -0.190 4.190 11 C -0.155 4.155 12 C -0.066 4.066 13 C 0.119 3.881 14 C 0.027 3.973 15 C -0.447 4.447 16 H 0.044 0.956 17 C 0.032 3.968 18 N -0.912 5.912 19 Si 0.925 3.075 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.292 1.292 23 C -0.196 4.196 24 C -0.156 4.156 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.020 0.980 28 H 0.027 0.973 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.031 0.969 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.041 0.959 43 H 0.010 0.990 44 H 0.250 0.750 45 H 0.083 0.917 46 H 0.071 0.929 47 H 0.060 0.940 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.122 14.979 -1.305 15.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.251 5.251 3 C -0.064 4.064 4 C -0.085 4.085 5 H 0.054 0.946 6 C -0.133 4.133 7 C -0.154 4.154 8 C -0.108 4.108 9 C -0.128 4.128 10 C -0.227 4.227 11 C -0.192 4.192 12 C -0.104 4.104 13 C -0.009 4.009 14 C 0.026 3.974 15 C -0.485 4.485 16 H 0.062 0.938 17 C -0.166 4.166 18 N -0.552 5.552 19 Si 0.753 3.247 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.219 1.219 23 C -0.233 4.233 24 C -0.194 4.194 25 H 0.091 0.909 26 H 0.073 0.927 27 H 0.038 0.962 28 H 0.045 0.955 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.050 0.950 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.059 0.941 43 H 0.028 0.972 44 H 0.059 0.941 45 H 0.101 0.899 46 H 0.089 0.911 47 H 0.079 0.921 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.425 14.630 -1.725 14.738 hybrid contribution 0.342 -0.687 0.064 0.770 sum 0.767 13.944 -1.662 14.063 Atomic orbital electron populations 1.22248 0.87386 1.01662 0.99566 1.61639 1.07503 1.12219 1.43728 1.22160 0.95880 0.89414 0.98981 1.20933 0.94947 0.96201 0.96434 0.94581 1.21271 0.95455 1.01164 0.95452 1.21472 0.96813 0.97276 0.99810 1.21081 1.00319 0.95238 0.94142 1.21500 0.92121 1.03568 0.95657 1.23001 1.00517 1.00262 0.98962 1.23037 1.01908 0.90925 1.03312 1.21106 0.93318 0.95824 1.00164 1.21402 0.97125 0.93544 0.88837 1.19011 0.97091 0.89600 0.91697 1.20298 0.96108 1.37695 0.94435 0.93764 1.25325 0.96702 0.95763 0.98850 1.70117 1.01900 1.49810 1.33393 0.86019 0.78063 0.77033 0.83602 1.19490 1.21017 1.21934 1.23073 0.91297 1.04314 1.04635 1.22305 0.96186 1.01538 0.99358 0.90930 0.92739 0.96165 0.95497 0.89878 0.91548 0.93471 0.92746 0.95045 0.90291 0.91820 0.89604 0.89724 0.87854 0.87833 0.91983 0.90130 0.94092 0.97238 0.94071 0.89910 0.91059 0.92112 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.32 9.36 127.69 1.19 2.52 16 2 N -0.53 -20.31 3.39 -922.44 -3.12 -23.43 16 3 C 0.06 2.01 4.37 86.30 0.38 2.39 16 4 C -0.07 -2.16 2.24 -10.76 -0.02 -2.18 16 5 H 0.04 1.47 6.63 -2.38 -0.02 1.46 16 6 C -0.10 -3.29 5.03 30.56 0.15 -3.13 16 7 C -0.12 -3.81 5.93 30.64 0.18 -3.63 16 8 C -0.07 -1.78 5.67 30.70 0.17 -1.61 16 9 C -0.13 -3.17 1.97 -52.20 -0.10 -3.27 16 10 C -0.19 -4.78 9.93 30.55 0.30 -4.48 16 11 C -0.16 -3.07 9.99 30.54 0.31 -2.77 16 12 C -0.07 -1.68 4.96 30.70 0.15 -1.53 16 13 C 0.12 5.19 4.87 86.30 0.42 5.61 16 14 C 0.03 1.30 1.13 -52.93 -0.06 1.24 16 15 C -0.45 -24.11 8.19 25.60 0.21 -23.90 16 16 H 0.04 2.45 7.82 -2.91 -0.02 2.42 16 17 C 0.03 1.75 5.41 84.66 0.46 2.21 16 18 N -0.91 -52.81 12.00 21.45 0.26 -52.55 16 19 Si 0.92 44.93 29.54 68.60 2.03 46.95 16 20 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 21 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 22 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 23 C -0.20 -8.50 9.64 30.59 0.30 -8.20 16 24 C -0.16 -7.56 8.90 30.60 0.27 -7.29 16 25 H 0.07 2.09 7.95 -2.39 -0.02 2.08 16 26 H 0.05 2.04 7.31 -2.39 -0.02 2.02 16 27 H 0.02 0.61 8.09 -2.39 -0.02 0.59 16 28 H 0.03 0.81 8.00 -2.38 -0.02 0.79 16 29 H 0.08 2.26 7.81 -2.38 -0.02 2.24 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.05 2.02 7.68 -2.39 -0.02 2.00 16 32 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.06 1.50 8.10 -2.38 -0.02 1.48 16 36 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.06 1.50 8.09 -2.39 -0.02 1.48 16 41 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 42 H 0.04 1.98 6.47 -2.39 -0.02 1.96 16 43 H 0.01 0.39 7.82 -2.39 -0.02 0.38 16 44 H 0.25 14.14 8.32 -92.71 -0.77 13.37 16 45 H 0.08 3.15 8.08 -2.39 -0.02 3.13 16 46 H 0.07 3.11 8.14 -2.38 -0.02 3.09 16 47 H 0.06 3.28 7.71 -2.39 -0.02 3.26 16 48 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -59.13 369.30 4.35 -54.78 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: 0.87 Total: 22.28 kcal Atomic # 6 Polarization: -52.34 SS G_CDS: 4.31 Total: -48.03 kcal Atomic # 7 Polarization: -73.12 SS G_CDS: -2.87 Total: -75.98 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -59.13 4.35 -54.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696224299.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.525 kcal (2) G-P(sol) polarization free energy of solvation -59.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds