Wall clock time and date at job start Mon Mar 30 2020 07:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46900 * 110.99838 * 2 1 4 4 C 1.52996 * 109.47285 * 283.35283 * 3 2 1 5 5 H 1.09000 * 109.47498 * 57.13230 * 4 3 2 6 6 C 1.52950 * 109.47493 * 297.12269 * 4 3 2 7 7 C 1.52936 * 109.82258 * 177.02121 * 6 4 3 8 8 C 1.53180 * 109.45363 * 62.98635 * 7 6 4 9 9 C 1.53152 * 108.87862 * 303.43185 * 8 7 6 10 10 C 1.52848 * 117.67801 * 268.49668 * 9 8 7 11 11 C 1.52813 * 117.74423 * 199.62060 * 9 8 7 12 12 C 1.53154 * 115.00634 * 53.94285 * 9 8 7 13 13 C 1.46899 * 111.00713 * 123.95655 * 2 1 3 14 14 C 1.52995 * 109.47370 * 75.91074 * 13 2 1 15 15 C 1.50700 * 115.55362 * 276.02579 * 14 13 2 16 16 H 1.07998 * 120.00096 * 145.78564 * 15 14 13 17 17 C 1.37879 * 119.99676 * 325.78046 * 15 14 13 18 18 N 1.31517 * 119.99995 * 339.59356 * 17 15 14 19 19 Si 1.86801 * 119.99731 * 159.58746 * 17 15 14 20 20 H 1.48502 * 109.46939 * 90.00433 * 19 17 15 21 21 H 1.48502 * 109.47287 * 210.00092 * 19 17 15 22 22 H 1.48497 * 109.47301 * 330.00339 * 19 17 15 23 23 C 1.53004 * 117.49817 * 130.30985 * 14 13 2 24 24 C 1.53001 * 117.49763 * 61.68873 * 14 13 2 25 25 H 1.08991 * 109.47527 * 53.52596 * 1 2 3 26 26 H 1.09004 * 109.46526 * 173.52905 * 1 2 3 27 27 H 1.08994 * 109.46987 * 293.51858 * 1 2 3 28 28 H 1.09002 * 109.47487 * 43.35513 * 3 2 1 29 29 H 1.09001 * 109.47381 * 163.34906 * 3 2 1 30 30 H 1.08997 * 109.41587 * 297.13166 * 6 4 3 31 31 H 1.09005 * 109.40852 * 56.91845 * 6 4 3 32 32 H 1.09009 * 109.47328 * 182.97890 * 7 6 4 33 33 H 1.09004 * 109.47522 * 302.98718 * 7 6 4 34 34 H 1.08997 * 109.56584 * 63.25380 * 8 7 6 35 35 H 1.09002 * 109.56497 * 183.61459 * 8 7 6 36 36 H 1.08994 * 117.50921 * 359.73870 * 10 9 8 37 37 H 1.09005 * 117.49861 * 144.79055 * 10 9 8 38 38 H 1.09000 * 117.49933 * 215.11450 * 11 9 8 39 39 H 1.08996 * 117.50351 * 0.15207 * 11 9 8 40 40 H 1.09000 * 109.56747 * 186.23551 * 12 9 8 41 41 H 1.08997 * 109.57084 * 65.87051 * 12 9 8 42 42 H 1.08997 * 109.47583 * 195.92237 * 13 2 1 43 43 H 1.09006 * 109.46572 * 315.91527 * 13 2 1 44 44 H 0.97000 * 119.99477 * 185.02055 * 18 17 15 45 45 H 1.08994 * 117.49795 * 0.02562 * 23 14 13 46 46 H 1.09002 * 117.49650 * 145.02491 * 23 14 13 47 47 H 1.08994 * 117.50607 * 214.97999 * 24 14 13 48 48 H 1.09000 * 117.49840 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.8671 1.9670 -1.4035 5 1 0.8241 1.9339 -1.7184 6 6 2.7208 1.1575 -2.3808 7 6 2.5407 1.7003 -3.7993 8 6 3.0452 3.1453 -3.8604 9 6 2.2969 3.9761 -2.8137 10 6 1.0154 4.6840 -3.2529 11 6 2.2858 5.4945 -2.9860 12 6 2.3500 3.4206 -1.3875 13 6 1.9956 -0.7660 1.1375 14 6 1.8506 -2.2627 0.8554 15 6 0.5057 -2.8587 1.1828 16 1 0.1062 -3.6567 0.5746 17 6 -0.2146 -2.3851 2.2589 18 7 0.3957 -1.7274 3.2205 19 14 -2.0573 -2.6774 2.3507 20 1 -2.3208 -3.9579 3.0551 21 1 -2.6990 -1.5629 3.0933 22 1 -2.6171 -2.7439 0.9769 23 6 3.0840 -3.1437 1.0643 24 6 2.5992 -2.8297 -0.3525 25 1 -0.3634 0.6108 -0.8263 26 1 -0.3632 -1.0212 -0.1158 27 1 -0.3633 0.4101 0.9423 28 1 1.4280 1.9785 0.7055 29 1 3.0447 1.3579 0.2945 30 1 3.7697 1.2333 -2.0944 31 1 2.4128 0.1123 -2.3511 32 1 3.1097 1.0869 -4.4980 33 1 1.4846 1.6723 -4.0677 34 1 4.1141 3.1681 -3.6486 35 1 2.8590 3.5552 -4.8531 36 1 0.7039 4.5634 -4.2904 37 1 0.2077 4.7601 -2.5249 38 1 2.3137 6.1037 -2.0825 39 1 2.8099 5.9071 -3.8479 40 1 1.7031 4.0131 -0.7406 41 1 3.3746 3.4608 -1.0179 42 1 3.0483 -0.5238 1.2825 43 1 1.4366 -0.5101 2.0377 44 1 -0.0965 -1.4578 4.0117 45 1 3.9985 -2.6570 1.4031 46 1 2.9228 -4.1545 1.4388 47 1 2.1193 -3.6339 -0.9101 48 1 3.1947 -2.1362 -0.9464 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696224303.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:29 Heat of formation + Delta-G solvation = 34.696741 kcal Electronic energy + Delta-G solvation = -22877.502828 eV Core-core repulsion = 19933.055239 eV Total energy + Delta-G solvation = -2944.447589 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.50118 -37.49041 -35.63006 -33.90115 -32.20008 -31.18399 -27.40075 -26.39620 -26.14282 -25.24807 -22.56462 -22.16235 -21.58105 -20.91145 -19.48445 -18.82780 -18.49424 -16.10745 -15.48105 -15.12097 -14.83277 -14.61915 -14.39039 -13.88006 -13.65735 -13.48642 -13.25744 -12.82659 -12.51335 -12.39346 -11.84177 -11.66116 -11.59346 -11.52976 -11.25924 -11.12202 -10.90198 -10.88312 -10.72746 -10.59104 -10.44376 -10.27265 -10.14022 -10.08722 -9.92761 -9.82164 -9.45408 -9.06703 -8.95359 -8.57627 -8.05135 -7.15890 -6.05109 -4.00222 3.24091 3.33402 3.38374 3.72727 4.36300 4.54601 4.70034 4.80265 4.91645 4.97177 5.08297 5.27233 5.28389 5.44148 5.55938 5.58786 5.65151 5.72697 5.77896 5.82895 5.90101 5.97288 5.99670 6.06597 6.09991 6.14412 6.16187 6.22872 6.37319 6.38661 6.43992 6.50347 6.59890 6.63086 6.73341 6.77485 6.84020 6.91936 6.99280 7.08807 7.20160 7.29414 7.50793 7.59507 7.96440 8.22827 8.25643 8.54699 8.92096 9.51747 10.94149 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.022735 B = 0.004632 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.285091 B = 6043.054644 C = 6615.762956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.528 5.528 3 C 0.058 3.942 4 C -0.074 4.074 5 H 0.067 0.933 6 C -0.104 4.104 7 C -0.116 4.116 8 C -0.080 4.080 9 C -0.113 4.113 10 C -0.175 4.175 11 C -0.182 4.182 12 C -0.076 4.076 13 C 0.078 3.922 14 C 0.064 3.936 15 C -0.484 4.484 16 H 0.059 0.941 17 C 0.076 3.924 18 N -0.872 5.872 19 Si 0.875 3.125 20 H -0.281 1.281 21 H -0.285 1.285 22 H -0.270 1.270 23 C -0.209 4.209 24 C -0.192 4.192 25 H 0.039 0.961 26 H 0.089 0.911 27 H 0.012 0.988 28 H 0.023 0.977 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.031 0.969 43 H 0.094 0.906 44 H 0.261 0.739 45 H 0.059 0.941 46 H 0.072 0.928 47 H 0.067 0.933 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.442 11.715 -10.467 16.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.252 5.252 3 C -0.070 4.070 4 C -0.092 4.092 5 H 0.086 0.914 6 C -0.141 4.141 7 C -0.154 4.154 8 C -0.117 4.117 9 C -0.113 4.113 10 C -0.212 4.212 11 C -0.219 4.219 12 C -0.114 4.114 13 C -0.048 4.048 14 C 0.063 3.937 15 C -0.521 4.521 16 H 0.077 0.923 17 C -0.127 4.127 18 N -0.510 5.510 19 Si 0.702 3.298 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.194 1.194 23 C -0.248 4.248 24 C -0.229 4.229 25 H 0.058 0.942 26 H 0.108 0.892 27 H 0.031 0.969 28 H 0.041 0.959 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.050 0.950 43 H 0.112 0.888 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.091 0.909 47 H 0.086 0.914 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.540 11.633 -10.726 16.214 hybrid contribution -1.206 0.285 0.919 1.542 sum 2.335 11.918 -9.807 15.610 Atomic orbital electron populations 1.22413 0.88004 1.03394 0.97613 1.61882 1.07637 1.10364 1.45291 1.22118 0.99334 0.90639 0.94955 1.21072 0.99931 0.92642 0.95604 0.91422 1.21404 0.99107 1.00909 0.92689 1.21540 1.01000 0.94861 0.97987 1.21149 0.99070 0.95208 0.96307 1.21484 1.00292 0.92568 0.96969 1.22986 0.91626 1.04679 1.01941 1.22978 1.01952 0.94055 1.02892 1.21186 1.01213 0.96192 0.92822 1.21971 0.96897 0.92825 0.93144 1.18813 0.90511 0.89931 0.94395 1.20520 1.00495 1.18558 1.12520 0.92295 1.24900 0.97840 0.94791 0.95149 1.69878 1.35621 1.39314 1.06139 0.86864 0.86558 0.77896 0.78503 1.20698 1.21056 1.19422 1.22987 1.00275 1.01771 0.99737 1.22656 1.06425 1.03122 0.90736 0.94203 0.89211 0.96896 0.95920 0.92091 0.92971 0.89955 0.92421 0.92240 0.91805 0.92548 0.89188 0.89049 0.89127 0.89225 0.92366 0.91743 0.95010 0.88831 0.92905 0.92205 0.90891 0.91446 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 8.72 60.06 0.52 1.23 16 2 N -0.53 -10.64 3.83 -242.93 -0.93 -11.57 16 3 C 0.06 0.99 4.42 -3.83 -0.02 0.98 16 4 C -0.07 -1.05 2.25 -90.55 -0.20 -1.25 16 5 H 0.07 1.04 6.80 -51.93 -0.35 0.68 16 6 C -0.10 -1.45 5.01 -26.79 -0.13 -1.59 16 7 C -0.12 -1.38 5.93 -26.67 -0.16 -1.54 16 8 C -0.08 -0.86 5.67 -26.56 -0.15 -1.01 16 9 C -0.11 -1.25 1.97 -154.52 -0.31 -1.55 16 10 C -0.18 -1.82 9.93 -26.79 -0.27 -2.08 16 11 C -0.18 -1.77 9.99 -26.81 -0.27 -2.04 16 12 C -0.08 -0.94 4.96 -26.56 -0.13 -1.07 16 13 C 0.08 1.81 4.77 -3.83 -0.02 1.80 16 14 C 0.06 1.58 1.78 -155.66 -0.28 1.30 16 15 C -0.48 -12.84 7.12 -34.44 -0.25 -13.08 16 16 H 0.06 1.59 7.90 -52.49 -0.41 1.18 16 17 C 0.08 1.99 4.50 -17.82 -0.08 1.91 16 18 N -0.87 -23.68 10.97 55.43 0.61 -23.07 16 19 Si 0.87 20.38 29.59 -169.99 -5.03 15.35 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 C -0.21 -4.87 9.88 -26.73 -0.26 -5.13 16 24 C -0.19 -4.27 9.86 -26.73 -0.26 -4.53 16 25 H 0.04 0.72 6.72 -51.93 -0.35 0.37 16 26 H 0.09 2.06 6.03 -51.93 -0.31 1.75 16 27 H 0.01 0.28 8.03 -51.93 -0.42 -0.14 16 28 H 0.02 0.40 7.99 -51.93 -0.41 -0.02 16 29 H 0.06 1.03 7.58 -51.93 -0.39 0.64 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 1.35 7.59 -51.93 -0.39 0.95 16 32 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.03 0.72 7.35 -51.93 -0.38 0.33 16 43 H 0.09 2.43 4.99 -51.93 -0.26 2.17 16 44 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 45 H 0.06 1.32 8.06 -51.93 -0.42 0.90 16 46 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 47 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 48 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 363.70 15.07 5.48 5.48 Total: -1.00 -26.03 363.70 -11.29 -37.32 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -9.16 Total: 4.16 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: -2.26 Total: -27.67 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: -0.32 Total: -34.64 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -26.03 -11.29 -37.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696224303.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.012 kcal (2) G-P(sol) polarization free energy of solvation -26.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds