Wall clock time and date at job start Mon Mar 30 2020 07:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.47178 * 2 1 4 4 N 1.46897 * 109.46911 * 240.00166 * 2 1 3 5 5 C 1.46905 * 110.99788 * 176.55814 * 4 2 1 6 6 C 1.46900 * 111.00203 * 52.60971 * 4 2 1 7 7 C 1.53001 * 109.47098 * 179.97438 * 6 4 2 8 8 C 1.50698 * 115.54711 * 292.13903 * 7 6 4 9 9 H 1.07999 * 120.00021 * 113.21050 * 8 7 6 10 10 C 1.37881 * 120.00122 * 293.20697 * 8 7 6 11 11 N 1.31511 * 119.99953 * 162.42574 * 10 8 7 12 12 Si 1.86799 * 119.99827 * 342.43374 * 10 8 7 13 13 H 1.48495 * 109.47515 * 95.77849 * 12 10 8 14 14 H 1.48504 * 109.46858 * 215.77895 * 12 10 8 15 15 H 1.48495 * 109.47141 * 335.77616 * 12 10 8 16 16 C 1.52998 * 117.49897 * 146.46914 * 7 6 4 17 17 C 1.53004 * 117.49995 * 77.80998 * 7 6 4 18 18 C 1.52994 * 109.47059 * 119.99719 * 2 1 3 19 19 C 1.52301 * 115.91614 * 208.79185 * 18 2 1 20 20 C 1.51359 * 60.10014 * 106.19576 * 19 18 2 21 21 H 1.08999 * 115.85183 * 251.98827 * 20 19 18 22 22 C 1.52537 * 117.53017 * 111.35326 * 20 19 18 23 23 C 1.52883 * 110.47934 * 270.70439 * 22 20 19 24 24 C 1.53303 * 108.57708 * 53.46026 * 23 22 20 25 25 C 1.52077 * 114.63397 * 62.55186 * 18 2 1 26 26 H 1.09003 * 109.46733 * 59.99827 * 1 2 3 27 27 H 1.08989 * 109.46655 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46828 * 299.99856 * 1 2 3 29 29 H 1.09000 * 109.46871 * 44.53721 * 5 4 2 30 30 H 1.09001 * 109.46881 * 164.53822 * 5 4 2 31 31 H 1.09006 * 109.47099 * 284.53690 * 5 4 2 32 32 H 1.09002 * 109.46636 * 299.96555 * 6 4 2 33 33 H 1.08992 * 109.47456 * 59.96344 * 6 4 2 34 34 H 0.97007 * 119.99634 * 180.02562 * 11 10 8 35 35 H 1.09003 * 117.50207 * 359.97438 * 16 7 6 36 36 H 1.09003 * 117.49688 * 145.01924 * 16 7 6 37 37 H 1.08998 * 117.49728 * 214.97869 * 17 7 6 38 38 H 1.08999 * 117.49786 * 359.97438 * 17 7 6 39 39 H 1.09003 * 117.54067 * 213.90849 * 19 18 2 40 40 H 1.09005 * 117.54063 * 359.15348 * 19 18 2 41 41 H 1.08998 * 110.05085 * 149.85016 * 22 20 19 42 42 H 1.08995 * 108.33291 * 30.47071 * 22 20 19 43 43 H 1.09000 * 109.62157 * 293.73407 * 23 22 20 44 44 H 1.08997 * 109.61746 * 173.18868 * 23 22 20 45 45 H 1.09006 * 109.61486 * 165.82378 * 24 23 22 46 46 H 1.08997 * 109.76537 * 45.37980 * 24 23 22 47 47 H 1.09003 * 109.26749 * 314.63256 * 25 18 2 48 48 H 1.08995 * 109.27191 * 74.13798 * 25 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 3.4859 -0.6412 -1.2753 6 6 1.4100 -0.1358 -2.4145 7 6 1.9437 -0.8803 -3.6400 8 6 3.4022 -0.6612 -3.9493 9 1 4.1029 -1.4775 -3.8542 10 6 3.8421 0.5813 -4.3538 11 7 5.1218 0.8779 -4.2923 12 14 2.6203 1.8434 -4.9891 13 1 2.2275 2.7528 -3.8829 14 1 3.2462 2.6328 -6.0802 15 1 1.4158 1.1480 -5.5096 16 6 0.9912 -1.0684 -4.8224 17 6 1.3582 -2.2622 -3.9374 18 6 2.0400 -0.7212 1.2492 19 6 3.3938 -0.2635 1.7760 20 6 2.1285 0.1198 2.5131 21 1 1.8332 1.1663 2.4380 22 6 1.8928 -0.5084 3.8829 23 6 1.1342 -1.8284 3.7427 24 6 1.8876 -2.7217 2.7505 25 6 1.6506 -2.1886 1.3374 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.9084 -0.8647 -0.2956 30 1 3.8382 -1.3760 -1.9992 31 1 3.7989 0.3553 -1.5872 32 1 0.3273 -0.2503 -2.3629 33 1 1.6600 0.9221 -2.4946 34 1 5.4312 1.7523 -4.5765 35 1 -0.0158 -0.6622 -4.7272 36 1 1.4196 -1.0342 -5.8242 37 1 2.0279 -3.0128 -4.3572 38 1 0.5931 -2.6411 -3.2598 39 1 4.0374 -1.0155 2.2325 40 1 3.9075 0.5259 1.2272 41 1 1.3199 0.1723 4.5126 42 1 2.8617 -0.6960 4.3454 43 1 0.1284 -1.6347 3.3700 44 1 1.0790 -2.3235 4.7121 45 1 1.5160 -3.7438 2.8231 46 1 2.9542 -2.7034 2.9744 47 1 0.5958 -2.2966 1.0845 48 1 2.2504 -2.7630 0.6316 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709284755.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:08 Heat of formation + Delta-G solvation = 47.244856 kcal Electronic energy + Delta-G solvation = -23553.096912 eV Core-core repulsion = 20609.193450 eV Total energy + Delta-G solvation = -2943.903462 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.20727 -37.67819 -35.35385 -32.93213 -32.16077 -30.97351 -29.79719 -26.63239 -25.77142 -24.53366 -23.71114 -22.10946 -21.44313 -21.08434 -19.92161 -18.66171 -17.84387 -16.39888 -15.55711 -15.16004 -14.71808 -14.46679 -14.19982 -13.81595 -13.77832 -13.58707 -13.26395 -12.76720 -12.62719 -12.50573 -12.10692 -11.85489 -11.78652 -11.52016 -11.43374 -11.09046 -10.90791 -10.84331 -10.70200 -10.65434 -10.54009 -10.39352 -10.30356 -10.03353 -9.95521 -9.42988 -9.30562 -9.12232 -8.91084 -8.54197 -8.19212 -7.32103 -6.11433 -3.99823 3.28686 3.40463 3.49837 3.90460 4.46520 4.56104 4.77921 4.89297 4.90398 5.08507 5.15799 5.22807 5.31872 5.33208 5.43887 5.56240 5.65998 5.71512 5.79039 5.82161 5.87816 5.90180 6.01717 6.02364 6.07842 6.15813 6.19127 6.24684 6.28787 6.35107 6.36303 6.42356 6.49505 6.52021 6.55030 6.62194 6.65959 6.70933 6.76793 6.87352 7.03960 7.21715 7.25932 7.53218 7.82066 8.03980 8.12624 8.54144 8.93408 9.55955 10.99760 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.024413 B = 0.005498 C = 0.005197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.657028 B = 5091.772746 C = 5386.311407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.109 3.891 3 H 0.029 0.971 4 N -0.518 5.518 5 C 0.035 3.965 6 C 0.092 3.908 7 C 0.005 3.995 8 C -0.476 4.476 9 H 0.077 0.923 10 C 0.081 3.919 11 N -0.889 5.889 12 Si 0.853 3.147 13 H -0.285 1.285 14 H -0.293 1.293 15 H -0.244 1.244 16 C -0.197 4.197 17 C -0.170 4.170 18 C -0.082 4.082 19 C -0.174 4.174 20 C -0.151 4.151 21 H 0.092 0.908 22 C -0.084 4.084 23 C -0.117 4.117 24 C -0.123 4.123 25 C -0.068 4.068 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.042 0.958 30 H 0.095 0.905 31 H 0.028 0.972 32 H 0.051 0.949 33 H 0.021 0.979 34 H 0.262 0.738 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.066 0.934 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.061 -3.152 13.760 16.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.001 3.999 3 H 0.047 0.953 4 N -0.242 5.242 5 C -0.112 4.112 6 C -0.036 4.036 7 C 0.004 3.996 8 C -0.513 4.513 9 H 0.095 0.905 10 C -0.122 4.122 11 N -0.526 5.526 12 Si 0.681 3.319 13 H -0.212 1.212 14 H -0.220 1.220 15 H -0.168 1.168 16 C -0.235 4.235 17 C -0.208 4.208 18 C -0.083 4.083 19 C -0.211 4.211 20 C -0.169 4.169 21 H 0.110 0.890 22 C -0.122 4.122 23 C -0.154 4.154 24 C -0.161 4.161 25 C -0.105 4.105 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.114 0.886 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.039 0.961 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.084 0.916 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.040 -3.494 13.746 16.303 hybrid contribution -0.210 1.943 -0.545 2.029 sum -8.250 -1.551 13.201 15.644 Atomic orbital electron populations 1.21886 0.95193 1.02211 1.00835 1.21186 0.94590 0.94193 0.89968 0.95311 1.62035 1.08352 1.53685 1.00118 1.22681 0.85684 1.02700 1.00124 1.21833 0.96248 0.95715 0.89794 1.19360 0.94228 0.94937 0.91107 1.20181 0.89232 0.96884 1.44958 0.90517 1.24831 0.94597 0.97592 0.95172 1.69990 1.14488 1.21870 1.46231 0.87180 0.83810 0.81776 0.79174 1.21196 1.22012 1.16785 1.23042 0.99015 1.04344 0.97133 1.22654 1.02941 0.92120 1.03058 1.20849 0.99397 0.95401 0.92607 1.22855 0.90935 1.03411 1.03892 1.21875 1.03080 0.99219 0.92760 0.88977 1.20959 1.00047 0.96458 0.94732 1.21541 0.99435 0.95663 0.98789 1.21655 1.00235 0.98473 0.95715 1.20648 1.01770 0.92460 0.95656 0.92729 0.91770 0.93071 0.93984 0.88632 0.95294 0.93028 0.96081 0.92843 0.91754 0.89926 0.90327 0.90947 0.89049 0.89064 0.92093 0.92203 0.91811 0.92530 0.92196 0.92206 0.91552 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.50 37.16 0.32 -1.78 16 2 C 0.11 1.81 1.84 -67.71 -0.12 1.69 16 3 H 0.03 0.53 8.03 -51.93 -0.42 0.11 16 4 N -0.52 -9.99 4.43 -234.88 -1.04 -11.03 16 5 C 0.04 0.75 7.91 60.07 0.48 1.23 16 6 C 0.09 1.94 4.15 -3.82 -0.02 1.92 16 7 C 0.00 0.11 0.79 -155.66 -0.12 -0.01 16 8 C -0.48 -12.53 5.96 -34.44 -0.21 -12.73 16 9 H 0.08 2.22 7.36 -52.49 -0.39 1.84 16 10 C 0.08 2.22 5.11 -17.82 -0.09 2.13 16 11 N -0.89 -26.00 13.96 55.43 0.77 -25.23 16 12 Si 0.85 21.06 25.72 -169.99 -4.37 16.69 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 15 H -0.24 -5.70 5.26 56.52 0.30 -5.40 16 16 C -0.20 -4.18 7.40 -26.69 -0.20 -4.38 16 17 C -0.17 -3.49 9.96 -26.69 -0.27 -3.76 16 18 C -0.08 -1.17 1.15 -155.82 -0.18 -1.34 16 19 C -0.17 -2.44 7.12 -27.92 -0.20 -2.64 16 20 C -0.15 -1.90 5.64 -92.16 -0.52 -2.42 16 21 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 22 C -0.08 -0.89 5.87 -27.03 -0.16 -1.05 16 23 C -0.12 -1.18 5.94 -26.63 -0.16 -1.34 16 24 C -0.12 -1.37 5.70 -26.64 -0.15 -1.52 16 25 C -0.07 -0.91 5.16 -27.27 -0.14 -1.05 16 26 H 0.05 0.83 6.32 -51.93 -0.33 0.50 16 27 H 0.06 0.91 6.63 -51.94 -0.34 0.57 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.04 0.80 4.83 -51.93 -0.25 0.55 16 30 H 0.10 2.28 5.38 -51.93 -0.28 2.01 16 31 H 0.03 0.70 7.48 -51.93 -0.39 0.31 16 32 H 0.05 1.00 6.13 -51.93 -0.32 0.68 16 33 H 0.02 0.49 6.27 -51.93 -0.33 0.17 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.08 1.82 7.96 -51.93 -0.41 1.40 16 37 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 39 H 0.09 1.21 7.28 -51.93 -0.38 0.83 16 40 H 0.09 1.41 7.76 -51.93 -0.40 1.00 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.61 8.06 -51.93 -0.42 0.19 16 43 H 0.06 0.66 8.04 -51.93 -0.42 0.24 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.68 7.13 -51.93 -0.37 0.31 16 47 H 0.07 0.89 6.44 -51.93 -0.33 0.55 16 48 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 344.47 15.07 5.19 5.19 Total: -1.00 -27.16 344.47 -10.00 -37.16 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -8.82 Total: 4.28 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: -1.74 Total: -27.06 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: -0.27 Total: -36.26 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.37 Total: 16.69 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.16 -10.00 -37.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709284755.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.408 kcal (2) G-P(sol) polarization free energy of solvation -27.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds