Wall clock time and date at job start Mon Mar 30 2020 07:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.47178 * 2 1 4 4 N 1.46897 * 109.46911 * 240.00166 * 2 1 3 5 5 C 1.46905 * 110.99788 * 176.55814 * 4 2 1 6 6 C 1.46900 * 111.00203 * 52.60971 * 4 2 1 7 7 C 1.53001 * 109.47098 * 179.97438 * 6 4 2 8 8 C 1.50698 * 115.54711 * 292.13903 * 7 6 4 9 9 H 1.07999 * 120.00021 * 113.21050 * 8 7 6 10 10 C 1.37881 * 120.00122 * 293.20697 * 8 7 6 11 11 N 1.31511 * 119.99953 * 162.42574 * 10 8 7 12 12 Si 1.86799 * 119.99827 * 342.43374 * 10 8 7 13 13 H 1.48495 * 109.47515 * 95.77849 * 12 10 8 14 14 H 1.48504 * 109.46858 * 215.77895 * 12 10 8 15 15 H 1.48495 * 109.47141 * 335.77616 * 12 10 8 16 16 C 1.52998 * 117.49897 * 146.46914 * 7 6 4 17 17 C 1.53004 * 117.49995 * 77.80998 * 7 6 4 18 18 C 1.52994 * 109.47059 * 119.99719 * 2 1 3 19 19 C 1.52301 * 115.91614 * 208.79185 * 18 2 1 20 20 C 1.51359 * 60.10014 * 106.19576 * 19 18 2 21 21 H 1.08999 * 115.85183 * 251.98827 * 20 19 18 22 22 C 1.52537 * 117.53017 * 111.35326 * 20 19 18 23 23 C 1.52883 * 110.47934 * 270.70439 * 22 20 19 24 24 C 1.53303 * 108.57708 * 53.46026 * 23 22 20 25 25 C 1.52077 * 114.63397 * 62.55186 * 18 2 1 26 26 H 1.09003 * 109.46733 * 59.99827 * 1 2 3 27 27 H 1.08989 * 109.46655 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46828 * 299.99856 * 1 2 3 29 29 H 1.09000 * 109.46871 * 44.53721 * 5 4 2 30 30 H 1.09001 * 109.46881 * 164.53822 * 5 4 2 31 31 H 1.09006 * 109.47099 * 284.53690 * 5 4 2 32 32 H 1.09002 * 109.46636 * 299.96555 * 6 4 2 33 33 H 1.08992 * 109.47456 * 59.96344 * 6 4 2 34 34 H 0.97007 * 119.99634 * 180.02562 * 11 10 8 35 35 H 1.09003 * 117.50207 * 359.97438 * 16 7 6 36 36 H 1.09003 * 117.49688 * 145.01924 * 16 7 6 37 37 H 1.08998 * 117.49728 * 214.97869 * 17 7 6 38 38 H 1.08999 * 117.49786 * 359.97438 * 17 7 6 39 39 H 1.09003 * 117.54067 * 213.90849 * 19 18 2 40 40 H 1.09005 * 117.54063 * 359.15348 * 19 18 2 41 41 H 1.08998 * 110.05085 * 149.85016 * 22 20 19 42 42 H 1.08995 * 108.33291 * 30.47071 * 22 20 19 43 43 H 1.09000 * 109.62157 * 293.73407 * 23 22 20 44 44 H 1.08997 * 109.61746 * 173.18868 * 23 22 20 45 45 H 1.09006 * 109.61486 * 165.82378 * 24 23 22 46 46 H 1.08997 * 109.76537 * 45.37980 * 24 23 22 47 47 H 1.09003 * 109.26749 * 314.63256 * 25 18 2 48 48 H 1.08995 * 109.27191 * 74.13798 * 25 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 3.4859 -0.6412 -1.2753 6 6 1.4100 -0.1358 -2.4145 7 6 1.9437 -0.8803 -3.6400 8 6 3.4022 -0.6612 -3.9493 9 1 4.1029 -1.4775 -3.8542 10 6 3.8421 0.5813 -4.3538 11 7 5.1218 0.8779 -4.2923 12 14 2.6203 1.8434 -4.9891 13 1 2.2275 2.7528 -3.8829 14 1 3.2462 2.6328 -6.0802 15 1 1.4158 1.1480 -5.5096 16 6 0.9912 -1.0684 -4.8224 17 6 1.3582 -2.2622 -3.9374 18 6 2.0400 -0.7212 1.2492 19 6 3.3938 -0.2635 1.7760 20 6 2.1285 0.1198 2.5131 21 1 1.8332 1.1663 2.4380 22 6 1.8928 -0.5084 3.8829 23 6 1.1342 -1.8284 3.7427 24 6 1.8876 -2.7217 2.7505 25 6 1.6506 -2.1886 1.3374 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.9084 -0.8647 -0.2956 30 1 3.8382 -1.3760 -1.9992 31 1 3.7989 0.3553 -1.5872 32 1 0.3273 -0.2503 -2.3629 33 1 1.6600 0.9221 -2.4946 34 1 5.4312 1.7523 -4.5765 35 1 -0.0158 -0.6622 -4.7272 36 1 1.4196 -1.0342 -5.8242 37 1 2.0279 -3.0128 -4.3572 38 1 0.5931 -2.6411 -3.2598 39 1 4.0374 -1.0155 2.2325 40 1 3.9075 0.5259 1.2272 41 1 1.3199 0.1723 4.5126 42 1 2.8617 -0.6960 4.3454 43 1 0.1284 -1.6347 3.3700 44 1 1.0790 -2.3235 4.7121 45 1 1.5160 -3.7438 2.8231 46 1 2.9542 -2.7034 2.9744 47 1 0.5958 -2.2966 1.0845 48 1 2.2504 -2.7630 0.6316 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709284755.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:07 Heat of formation + Delta-G solvation = 33.146639 kcal Electronic energy + Delta-G solvation = -23553.708256 eV Core-core repulsion = 20609.193450 eV Total energy + Delta-G solvation = -2944.514806 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.36414 -39.30135 -36.83312 -34.26612 -33.97563 -32.19064 -30.95784 -28.33628 -27.75280 -25.53011 -25.14430 -23.38218 -23.12895 -22.22009 -21.14258 -20.53326 -18.90159 -18.33401 -16.97334 -16.68355 -16.35228 -15.79324 -15.47261 -15.30006 -15.05207 -14.75627 -14.66054 -14.29236 -14.24057 -13.92139 -13.54233 -13.25571 -13.05503 -12.94965 -12.80540 -12.60165 -12.52385 -12.36027 -12.17260 -12.03765 -11.91726 -11.76767 -11.64884 -11.51883 -11.23738 -11.00752 -10.80189 -10.55703 -10.41624 -10.25956 -10.11450 -9.00003 -8.26788 -6.16065 1.29010 1.36919 1.50034 2.39611 2.71947 3.01103 3.19962 3.57868 3.68692 3.86539 3.97449 4.02784 4.17307 4.24329 4.32103 4.36020 4.45506 4.46026 4.54977 4.57400 4.64454 4.70543 4.77634 4.82327 4.86067 4.89522 4.94443 4.98024 4.99437 5.07906 5.08748 5.14238 5.18669 5.21007 5.26400 5.31538 5.39430 5.44815 5.46432 5.50248 5.59055 5.61586 5.63693 5.66530 5.78736 6.31028 6.40766 6.51479 6.79907 7.40996 8.88006 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.024413 B = 0.005498 C = 0.005197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.657028 B = 5091.772746 C = 5386.311407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.106 3.894 3 H 0.007 0.993 4 N -0.511 5.511 5 C 0.058 3.942 6 C 0.099 3.901 7 C -0.025 4.025 8 C -0.459 4.459 9 H 0.035 0.965 10 C 0.031 3.969 11 N -0.937 5.937 12 Si 0.905 3.095 13 H -0.289 1.289 14 H -0.300 1.300 15 H -0.216 1.216 16 C -0.188 4.188 17 C -0.152 4.152 18 C -0.089 4.089 19 C -0.189 4.189 20 C -0.129 4.129 21 H 0.091 0.909 22 C -0.083 4.083 23 C -0.113 4.113 24 C -0.120 4.120 25 C -0.064 4.064 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.064 0.936 31 H -0.012 1.012 32 H 0.080 0.920 33 H -0.005 1.005 34 H 0.259 0.741 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.055 0.945 47 H 0.070 0.930 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.371 -3.800 15.580 19.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.003 4.003 3 H 0.025 0.975 4 N -0.234 5.234 5 C -0.090 4.090 6 C -0.029 4.029 7 C -0.026 4.026 8 C -0.497 4.497 9 H 0.053 0.947 10 C -0.167 4.167 11 N -0.576 5.576 12 Si 0.731 3.269 13 H -0.216 1.216 14 H -0.227 1.227 15 H -0.138 1.138 16 C -0.226 4.226 17 C -0.189 4.189 18 C -0.090 4.090 19 C -0.226 4.226 20 C -0.148 4.148 21 H 0.109 0.891 22 C -0.121 4.121 23 C -0.150 4.150 24 C -0.157 4.157 25 C -0.101 4.101 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.007 0.993 32 H 0.098 0.902 33 H 0.013 0.987 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.074 0.926 47 H 0.089 0.911 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.381 -4.162 15.566 19.727 hybrid contribution 0.887 2.077 -1.067 2.498 sum -10.494 -2.084 14.499 18.019 Atomic orbital electron populations 1.21843 0.92913 1.03024 1.01682 1.21324 0.96392 0.93001 0.89548 0.97514 1.62054 1.06529 1.53927 1.00905 1.22293 0.87601 0.99098 0.99979 1.21749 0.97678 0.93867 0.89641 1.19329 0.92452 0.97781 0.93002 1.20237 0.90930 0.95317 1.43190 0.94719 1.25481 0.95814 0.99620 0.95816 1.70118 1.16532 1.22392 1.48590 0.86371 0.82757 0.79629 0.78192 1.21636 1.22680 1.13828 1.23067 0.99492 1.04212 0.95838 1.22668 1.02640 0.90986 1.02634 1.20830 0.99398 0.96226 0.92500 1.22831 0.91499 1.03329 1.04899 1.21943 1.00623 0.98985 0.93221 0.89106 1.21012 1.00813 0.97060 0.93184 1.21528 0.99048 0.95039 0.99376 1.21633 1.00333 0.99385 0.94382 1.20603 1.01422 0.91267 0.96828 0.93225 0.90848 0.90950 0.92098 0.91761 0.99320 0.90234 0.98669 0.93171 0.89011 0.90872 0.91055 0.88382 0.88309 0.91334 0.90392 0.91728 0.91609 0.90558 0.90932 0.92623 0.91113 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 8.50 71.98 0.61 -3.00 16 2 C 0.11 3.41 1.84 44.92 0.08 3.49 16 3 H 0.01 0.25 8.03 -2.39 -0.02 0.23 16 4 N -0.51 -19.67 4.43 -897.03 -3.97 -23.64 16 5 C 0.06 2.61 7.91 127.69 1.01 3.62 16 6 C 0.10 4.06 4.15 86.30 0.36 4.42 16 7 C -0.02 -1.10 0.79 -52.93 -0.04 -1.14 16 8 C -0.46 -25.10 5.96 25.60 0.15 -24.95 16 9 H 0.03 2.14 7.36 -2.91 -0.02 2.12 16 10 C 0.03 1.74 5.11 84.66 0.43 2.17 16 11 N -0.94 -57.72 13.96 21.45 0.30 -57.42 16 12 Si 0.90 44.06 25.72 68.60 1.76 45.82 16 13 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 14 H -0.30 -14.80 7.11 99.48 0.71 -14.10 16 15 H -0.22 -9.44 5.26 99.48 0.52 -8.91 16 16 C -0.19 -7.47 7.40 30.62 0.23 -7.25 16 17 C -0.15 -5.92 9.96 30.62 0.30 -5.61 16 18 C -0.09 -2.42 1.15 -53.03 -0.06 -2.48 16 19 C -0.19 -5.25 7.12 29.83 0.21 -5.04 16 20 C -0.13 -3.00 5.64 -11.79 -0.07 -3.07 16 21 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 22 C -0.08 -1.47 5.87 30.40 0.18 -1.29 16 23 C -0.11 -1.84 5.94 30.66 0.18 -1.65 16 24 C -0.12 -2.32 5.70 30.65 0.17 -2.15 16 25 C -0.06 -1.58 5.16 30.25 0.16 -1.43 16 26 H 0.05 1.35 6.32 -2.39 -0.02 1.34 16 27 H 0.07 1.81 6.63 -2.39 -0.02 1.80 16 28 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 2.44 4.83 -2.39 -0.01 2.43 16 30 H 0.06 3.26 5.38 -2.39 -0.01 3.25 16 31 H -0.01 -0.63 7.48 -2.38 -0.02 -0.65 16 32 H 0.08 2.85 6.13 -2.39 -0.01 2.83 16 33 H 0.00 -0.22 6.27 -2.39 -0.01 -0.24 16 34 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 35 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 36 H 0.07 3.06 7.96 -2.39 -0.02 3.04 16 37 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 38 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 39 H 0.10 2.57 7.28 -2.39 -0.02 2.56 16 40 H 0.07 2.21 7.76 -2.38 -0.02 2.19 16 41 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.06 1.12 8.06 -2.39 -0.02 1.10 16 43 H 0.07 1.08 8.04 -2.39 -0.02 1.06 16 44 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 46 H 0.06 1.13 7.13 -2.39 -0.02 1.11 16 47 H 0.07 1.69 6.44 -2.39 -0.02 1.67 16 48 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -61.58 344.47 2.72 -58.86 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.72 Total: 21.75 kcal Atomic # 6 Polarization: -49.28 SS G_CDS: 3.91 Total: -45.37 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -3.67 Total: -81.06 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.76 Total: 45.82 kcal Total: -61.58 2.72 -58.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709284755.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.006 kcal (2) G-P(sol) polarization free energy of solvation -61.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds