Wall clock time and date at job start Mon Mar 30 2020 07:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47224 * 2 1 4 4 H 1.08995 * 109.47003 * 177.91014 * 3 2 1 5 5 C 1.50705 * 109.46829 * 57.91306 * 3 2 1 6 6 H 1.08002 * 119.99836 * 239.99723 * 5 3 2 7 7 C 1.37872 * 119.99980 * 59.99969 * 5 3 2 8 8 N 1.31516 * 120.00339 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99919 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47346 * 59.99887 * 9 7 5 11 11 H 1.48506 * 109.47136 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47011 * 299.99619 * 9 7 5 13 13 N 1.46894 * 109.47360 * 297.91296 * 3 2 1 14 14 C 1.46898 * 111.00240 * 273.92370 * 13 3 2 15 15 C 1.52996 * 109.47315 * 175.13661 * 14 13 3 16 16 C 1.53002 * 109.47173 * 184.99953 * 15 14 13 17 17 C 1.53002 * 109.47470 * 180.02562 * 16 15 14 18 18 C 1.52995 * 109.47057 * 59.99771 * 17 16 15 19 19 C 1.53004 * 109.47178 * 60.00032 * 18 17 16 20 20 C 1.52996 * 109.47310 * 300.00177 * 19 18 17 21 21 C 1.53003 * 109.47262 * 300.00214 * 16 15 14 22 22 C 1.53002 * 109.47173 * 299.99702 * 20 19 18 23 23 C 1.52994 * 109.47378 * 65.00163 * 15 14 13 24 24 C 1.52996 * 109.47378 * 180.02562 * 23 15 14 25 25 H 1.08997 * 109.46891 * 294.48212 * 1 2 3 26 26 H 1.08999 * 109.47057 * 54.47841 * 1 2 3 27 27 H 1.08997 * 109.47276 * 174.48416 * 1 2 3 28 28 H 1.09004 * 109.46950 * 240.00267 * 2 1 3 29 29 H 1.08996 * 109.47299 * 120.00432 * 2 1 3 30 30 H 0.97001 * 120.00338 * 180.02562 * 8 7 5 31 31 H 1.00902 * 111.00073 * 149.96871 * 13 3 2 32 32 H 1.09007 * 109.47291 * 55.13278 * 14 13 3 33 33 H 1.09004 * 109.46880 * 295.13900 * 14 13 3 34 34 H 1.08993 * 109.47401 * 304.99684 * 15 14 13 35 35 H 1.08999 * 109.47269 * 59.99905 * 16 15 14 36 36 H 1.08997 * 109.46806 * 300.00116 * 17 16 15 37 37 H 1.08994 * 109.47083 * 180.02562 * 17 16 15 38 38 H 1.08994 * 109.47115 * 180.02562 * 18 17 16 39 39 H 1.09003 * 109.46878 * 59.99913 * 19 18 17 40 40 H 1.08999 * 109.47312 * 179.97438 * 19 18 17 41 41 H 1.08997 * 109.47016 * 179.97438 * 20 19 18 42 42 H 1.09007 * 109.47167 * 59.99488 * 21 16 15 43 43 H 1.09003 * 109.47381 * 179.97438 * 21 16 15 44 44 H 1.08994 * 109.47268 * 179.97438 * 22 20 19 45 45 H 1.08999 * 109.46749 * 300.00178 * 22 20 19 46 46 H 1.09001 * 109.46894 * 300.00350 * 23 15 14 47 47 H 1.08999 * 109.47429 * 180.02562 * 24 23 15 48 48 H 1.08997 * 109.47016 * 59.99852 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1294 1.4427 0.0375 5 6 1.4959 2.1676 1.2038 6 1 0.8790 3.0444 1.0728 7 6 1.7857 1.7118 2.4724 8 7 2.5365 0.6440 2.6319 9 14 1.1117 2.6111 3.9645 10 1 -0.3724 2.6115 3.9138 11 1 1.5651 1.9262 5.2018 12 1 1.6074 4.0110 3.9644 13 7 1.5921 2.1203 -1.2238 14 6 2.5281 1.8817 -2.3305 15 6 1.9687 2.4992 -3.6137 16 6 2.8804 2.1444 -4.7901 17 6 2.3214 2.7625 -6.0732 18 6 2.2552 4.2833 -5.9199 19 6 3.6598 4.8313 -5.6597 20 6 4.2189 4.2133 -4.3767 21 6 4.2850 2.6929 -4.5303 22 6 3.3071 4.5681 -3.2003 23 6 1.9020 4.0200 -3.4609 24 6 1.3420 4.6375 -4.7438 25 1 -0.3633 0.4259 0.9352 26 1 -0.3633 0.5971 -0.8364 27 1 -0.3634 -1.0229 -0.0988 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.7401 0.3231 3.5244 31 1 1.4653 3.1085 -1.0641 32 1 2.6590 0.8086 -2.4708 33 1 3.4903 2.3376 -2.0973 34 1 0.9682 2.1084 -3.7989 35 1 2.9280 1.0609 -4.8990 36 1 1.3208 2.3721 -6.2585 37 1 2.9707 2.5093 -6.9112 38 1 1.8566 4.7235 -6.8338 39 1 4.3094 4.5785 -6.4978 40 1 3.6127 5.9148 -5.5510 41 1 5.2197 4.6033 -4.1916 42 1 4.6835 2.2529 -3.6160 43 1 4.9347 2.4397 -5.3681 44 1 3.7051 4.1274 -2.2863 45 1 3.2600 5.6515 -3.0912 46 1 1.2525 4.2728 -2.6228 47 1 1.2949 5.7210 -4.6351 48 1 0.3414 4.2467 -4.9284 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822132691.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:39 Heat of formation + Delta-G solvation = -42.261681 kcal Electronic energy + Delta-G solvation = -23481.110401 eV Core-core repulsion = 20533.325645 eV Total energy + Delta-G solvation = -2947.784757 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.39287 -36.31844 -33.73352 -32.51128 -32.49277 -31.63861 -30.11830 -27.12655 -25.74861 -25.39614 -23.23794 -22.96302 -21.29821 -21.23683 -20.23340 -18.82595 -17.21185 -16.22110 -15.10744 -15.00083 -14.84950 -14.34561 -14.13770 -13.85827 -13.57082 -13.21349 -13.16646 -12.92994 -12.86530 -12.34601 -12.26790 -12.05375 -11.94963 -11.52232 -11.40263 -10.98764 -10.86456 -10.77946 -10.70060 -10.65915 -10.58605 -10.43626 -10.30131 -9.88014 -9.75335 -9.43993 -9.39711 -9.37613 -9.23287 -8.71232 -8.41669 -7.09819 -5.97820 -4.02912 3.32514 3.37305 3.39937 4.42911 4.61334 4.61556 4.64047 5.17219 5.21568 5.27581 5.33413 5.34399 5.36213 5.41625 5.48983 5.49937 5.53223 5.65827 5.79528 5.83166 5.87611 5.97183 6.04869 6.08994 6.10900 6.15795 6.18532 6.21059 6.27464 6.33523 6.44024 6.49375 6.57848 6.65363 6.69353 6.76849 6.78592 6.85993 6.91928 7.29309 7.40052 7.56639 7.79404 7.84580 7.91397 8.32784 8.48027 8.76410 9.07575 9.61703 11.08125 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.026885 B = 0.004651 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.220631 B = 6019.400179 C = 6313.448783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.101 4.101 3 C 0.217 3.783 4 H -0.003 1.003 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.064 3.936 8 N -0.890 5.890 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.279 1.279 13 N -0.686 5.686 14 C 0.064 3.936 15 C -0.069 4.069 16 C -0.080 4.080 17 C -0.106 4.106 18 C -0.085 4.085 19 C -0.106 4.106 20 C -0.084 4.084 21 C -0.109 4.109 22 C -0.111 4.111 23 C -0.080 4.080 24 C -0.106 4.106 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.011 0.989 28 H 0.008 0.992 29 H 0.083 0.917 30 H 0.260 0.740 31 H 0.328 0.672 32 H 0.058 0.942 33 H 0.023 0.977 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.054 0.946 44 H 0.068 0.932 45 H 0.055 0.945 46 H 0.075 0.925 47 H 0.056 0.944 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.633 5.983 -16.337 17.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.139 4.139 3 C 0.109 3.891 4 H 0.015 0.985 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.317 5.317 14 C -0.066 4.066 15 C -0.088 4.088 16 C -0.099 4.099 17 C -0.143 4.143 18 C -0.103 4.103 19 C -0.143 4.143 20 C -0.102 4.102 21 C -0.147 4.147 22 C -0.149 4.149 23 C -0.099 4.099 24 C -0.143 4.143 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.030 0.970 28 H 0.027 0.973 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.146 0.854 32 H 0.076 0.924 33 H 0.041 0.959 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.093 0.907 47 H 0.075 0.925 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.293 5.347 -16.355 17.255 hybrid contribution 0.448 0.943 1.171 1.569 sum 1.741 6.290 -15.184 16.527 Atomic orbital electron populations 1.21431 0.97582 0.97002 1.01534 1.21409 0.95020 0.98369 0.99123 1.19073 0.93091 0.91566 0.85369 0.98498 1.21156 1.31496 1.11853 0.90446 0.92513 1.24874 0.95129 0.95017 0.98783 1.69882 1.37498 1.23115 1.22338 0.86670 0.79447 0.79744 0.82183 1.20243 1.21390 1.20445 1.60665 1.47823 1.15850 1.07339 1.22000 0.93949 0.99364 0.91274 1.21096 0.99104 0.94498 0.94116 1.21045 0.94987 0.99166 0.94710 1.21516 1.00634 0.94985 0.97171 1.21038 0.95598 0.95809 0.97875 1.21520 0.96068 0.99392 0.97322 1.20997 0.98409 0.95683 0.95108 1.21558 0.96562 0.95173 1.01381 1.21598 0.95363 0.99922 0.97980 1.21039 0.96277 0.95218 0.97319 1.21534 0.98300 0.99797 0.94712 0.93033 0.93426 0.97011 0.97287 0.89841 0.92994 0.85426 0.92359 0.95871 0.90878 0.91537 0.92191 0.92547 0.91978 0.92541 0.92436 0.91892 0.91563 0.92709 0.91383 0.92600 0.90698 0.92516 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.71 9.46 37.16 0.35 -2.36 16 2 C -0.10 -2.47 5.57 -26.73 -0.15 -2.62 16 3 C 0.22 5.39 2.30 -68.87 -0.16 5.23 16 4 H 0.00 -0.07 7.84 -51.93 -0.41 -0.48 16 5 C -0.51 -13.71 7.33 -34.44 -0.25 -13.96 16 6 H 0.06 1.51 7.60 -52.49 -0.40 1.11 16 7 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 8 N -0.89 -25.28 11.34 55.43 0.63 -24.66 16 9 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 13 N -0.69 -14.22 5.49 -107.96 -0.59 -14.82 16 14 C 0.06 1.13 4.20 -3.83 -0.02 1.12 16 15 C -0.07 -1.00 2.14 -90.62 -0.19 -1.19 16 16 C -0.08 -1.00 2.72 -90.62 -0.25 -1.25 16 17 C -0.11 -1.15 5.19 -26.73 -0.14 -1.29 16 18 C -0.08 -0.90 3.19 -90.59 -0.29 -1.19 16 19 C -0.11 -1.10 5.19 -26.73 -0.14 -1.24 16 20 C -0.08 -0.98 3.19 -90.64 -0.29 -1.27 16 21 C -0.11 -1.33 4.92 -26.75 -0.13 -1.46 16 22 C -0.11 -1.46 4.92 -26.70 -0.13 -1.60 16 23 C -0.08 -1.08 2.49 -90.60 -0.23 -1.30 16 24 C -0.11 -1.23 5.20 -26.70 -0.14 -1.36 16 25 H 0.05 1.27 7.37 -51.93 -0.38 0.88 16 26 H 0.05 1.05 7.51 -51.93 -0.39 0.66 16 27 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.01 0.20 7.42 -51.93 -0.39 -0.19 16 29 H 0.08 2.27 6.13 -51.93 -0.32 1.96 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.33 6.74 6.63 -39.29 -0.26 6.48 16 32 H 0.06 1.10 7.39 -51.93 -0.38 0.71 16 33 H 0.02 0.43 4.82 -51.93 -0.25 0.17 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.89 6.54 -51.92 -0.34 0.55 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 1.03 6.32 -51.93 -0.33 0.70 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.07 1.11 6.79 -51.93 -0.35 0.76 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 337.53 15.07 5.09 5.09 Total: -1.00 -27.00 337.53 -10.97 -37.97 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -8.83 Total: 4.30 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: -2.24 Total: -24.09 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.04 Total: -39.47 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.00 -10.97 -37.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822132691.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.296 kcal (2) G-P(sol) polarization free energy of solvation -26.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds