Wall clock time and date at job start Mon Mar 30 2020 07:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47187 * 2 1 4 4 H 1.08995 * 109.47115 * 185.15847 * 3 2 1 5 5 C 1.50696 * 109.46858 * 305.15903 * 3 2 1 6 6 H 1.08001 * 119.99797 * 119.99768 * 5 3 2 7 7 C 1.37873 * 119.99896 * 299.99793 * 5 3 2 8 8 N 1.31518 * 120.00153 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99945 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47243 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47153 * 119.99793 * 9 7 5 12 12 H 1.48504 * 109.47187 * 239.99792 * 9 7 5 13 13 N 1.46896 * 109.46963 * 65.15887 * 3 2 1 14 14 C 1.46901 * 111.00577 * 85.89931 * 13 3 2 15 15 C 1.52998 * 109.47777 * 174.82045 * 14 13 3 16 16 C 1.52999 * 109.47177 * 295.00678 * 15 14 13 17 17 C 1.53000 * 109.46680 * 299.99661 * 16 15 14 18 18 C 1.53004 * 109.47329 * 299.99802 * 17 16 15 19 19 C 1.53001 * 109.47156 * 300.00456 * 18 17 16 20 20 C 1.52999 * 109.46845 * 59.99550 * 19 18 17 21 21 C 1.52997 * 109.47719 * 299.99696 * 20 19 18 22 22 C 1.52999 * 109.47295 * 60.00227 * 20 19 18 23 23 C 1.52991 * 109.47185 * 175.00129 * 15 14 13 24 24 C 1.52999 * 109.46837 * 60.00139 * 18 17 16 25 25 H 1.09000 * 109.47736 * 294.84638 * 1 2 3 26 26 H 1.09002 * 109.47362 * 174.84627 * 1 2 3 27 27 H 1.09003 * 109.46846 * 54.85127 * 1 2 3 28 28 H 1.09008 * 109.46894 * 119.99813 * 2 1 3 29 29 H 1.08995 * 109.47576 * 239.99573 * 2 1 3 30 30 H 0.96999 * 119.99932 * 179.97438 * 8 7 5 31 31 H 1.00902 * 110.99920 * 321.94572 * 13 3 2 32 32 H 1.08998 * 109.46976 * 294.82816 * 14 13 3 33 33 H 1.09004 * 109.46501 * 54.82186 * 14 13 3 34 34 H 1.09006 * 109.46343 * 54.99931 * 15 14 13 35 35 H 1.08995 * 109.47278 * 59.99281 * 16 15 14 36 36 H 1.09005 * 109.47461 * 60.00242 * 17 16 15 37 37 H 1.09004 * 109.46970 * 179.97438 * 17 16 15 38 38 H 1.08997 * 109.47282 * 179.97438 * 18 17 16 39 39 H 1.08994 * 109.46733 * 299.99772 * 19 18 17 40 40 H 1.08996 * 109.46962 * 179.97438 * 19 18 17 41 41 H 1.09005 * 109.46932 * 179.97438 * 20 19 18 42 42 H 1.08996 * 109.47786 * 179.97438 * 21 20 19 43 43 H 1.09004 * 109.46992 * 300.01035 * 21 20 19 44 44 H 1.08997 * 109.47040 * 179.97438 * 22 20 19 45 45 H 1.09001 * 109.46897 * 59.99380 * 22 20 19 46 46 H 1.09004 * 109.47430 * 300.00039 * 23 15 14 47 47 H 1.08996 * 109.47542 * 180.02562 * 24 18 17 48 48 H 1.09005 * 109.46849 * 60.00236 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1260 1.4439 -0.0924 5 6 1.4360 2.1888 -1.1616 6 1 0.8268 3.0627 -0.9839 7 6 1.6612 1.7559 -2.4511 8 7 2.4026 0.6914 -2.6674 9 14 0.9131 2.6814 -3.8910 10 1 0.1267 3.8343 -3.3836 11 1 1.9963 3.1732 -4.7798 12 1 0.0212 1.7719 -4.6544 13 7 1.6546 2.0981 1.2568 14 6 2.6430 1.8367 2.3117 15 6 2.2774 2.6374 3.5631 16 6 2.3917 4.1333 3.2629 17 6 3.8274 4.4620 2.8486 18 6 4.7831 4.0956 3.9859 19 6 4.4174 4.8962 5.2373 20 6 2.9817 4.5675 5.6515 21 6 2.0260 4.9340 4.5144 22 6 2.8673 3.0716 5.9517 23 6 3.2330 2.2709 4.7003 24 6 4.6687 2.5997 4.2860 25 1 -0.3634 0.4318 0.9325 26 1 -0.3634 -1.0235 -0.0923 27 1 -0.3633 0.5917 -0.8403 28 1 1.8933 -0.5138 0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 2.5607 0.3866 -3.5746 31 1 0.7319 1.8104 1.5466 32 1 2.6480 0.7730 2.5494 33 1 3.6321 2.1361 1.9649 34 1 1.2546 2.4031 3.8582 35 1 1.7109 4.3943 2.4527 36 1 4.0879 3.8916 1.9570 37 1 3.9087 5.5276 2.6343 38 1 5.8059 4.3293 3.6905 39 1 4.4988 5.9619 5.0234 40 1 5.0979 4.6349 6.0476 41 1 2.7213 5.1375 6.5434 42 1 1.0033 4.6993 4.8093 43 1 2.1076 5.9997 4.3005 44 1 1.8446 2.8375 6.2473 45 1 3.5482 2.8105 6.7619 46 1 3.1516 1.2051 4.9142 47 1 5.3492 2.3386 5.0965 48 1 4.9293 2.0293 3.3944 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822132694.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:41 Heat of formation + Delta-G solvation = -41.306117 kcal Electronic energy + Delta-G solvation = -23494.472497 eV Core-core repulsion = 20546.729177 eV Total energy + Delta-G solvation = -2947.743320 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.30482 -36.51522 -33.71287 -32.44048 -32.38591 -31.70004 -30.02404 -27.03653 -25.66109 -25.44928 -23.30149 -22.93490 -21.20906 -21.16582 -20.20038 -19.18611 -17.16776 -15.98505 -14.94671 -14.89969 -14.75075 -14.43964 -14.24302 -13.99458 -13.42169 -13.09519 -13.05173 -12.98604 -12.73116 -12.39812 -12.22953 -12.09957 -12.07557 -11.74099 -11.17162 -10.98410 -10.86010 -10.70164 -10.63294 -10.58720 -10.51475 -10.47841 -10.38272 -9.87835 -9.76021 -9.53106 -9.38997 -9.33229 -9.19031 -8.87999 -8.30241 -7.07959 -5.93119 -3.94082 3.33636 3.41956 3.46880 4.47705 4.66532 4.66969 4.71253 5.21476 5.28418 5.32325 5.38516 5.38935 5.43981 5.48669 5.54617 5.56443 5.60569 5.72744 5.82470 5.89709 5.93277 6.02787 6.09131 6.12211 6.18620 6.23118 6.25303 6.29100 6.33121 6.36376 6.40971 6.42742 6.45862 6.51603 6.63025 6.70967 6.79541 6.92453 6.94652 6.96246 7.34190 7.36942 7.56639 7.75713 7.95337 8.36007 8.64503 8.71528 9.12463 9.69620 11.13921 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.026021 B = 0.004741 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.783883 B = 5903.924671 C = 6232.674798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.145 4.145 3 C 0.216 3.784 4 H 0.030 0.970 5 C -0.484 4.484 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.681 5.681 14 C 0.062 3.938 15 C -0.069 4.069 16 C -0.069 4.069 17 C -0.107 4.107 18 C -0.086 4.086 19 C -0.105 4.105 20 C -0.085 4.085 21 C -0.109 4.109 22 C -0.105 4.105 23 C -0.081 4.081 24 C -0.108 4.108 25 H 0.027 0.973 26 H 0.022 0.978 27 H 0.068 0.932 28 H 0.009 0.991 29 H 0.091 0.909 30 H 0.257 0.743 31 H 0.323 0.677 32 H 0.011 0.989 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.063 0.937 47 H 0.053 0.947 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.358 4.900 16.039 16.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.185 4.185 3 C 0.108 3.892 4 H 0.048 0.952 5 C -0.523 4.523 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.213 1.213 13 N -0.311 5.311 14 C -0.067 4.067 15 C -0.088 4.088 16 C -0.088 4.088 17 C -0.145 4.145 18 C -0.104 4.104 19 C -0.143 4.143 20 C -0.103 4.103 21 C -0.147 4.147 22 C -0.142 4.142 23 C -0.100 4.100 24 C -0.145 4.145 25 H 0.046 0.954 26 H 0.041 0.959 27 H 0.087 0.913 28 H 0.028 0.972 29 H 0.109 0.891 30 H 0.067 0.933 31 H 0.141 0.859 32 H 0.029 0.971 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.081 0.919 47 H 0.072 0.928 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.706 5.414 15.704 16.830 hybrid contribution -0.525 -0.655 -0.634 1.052 sum 2.181 4.759 15.070 15.953 Atomic orbital electron populations 1.21589 0.97766 0.98550 1.00732 1.22098 0.94939 1.01345 1.00076 1.19179 0.95736 0.88433 0.85819 0.95240 1.21119 1.30138 1.11310 0.89684 0.92055 1.24913 0.95634 0.95180 0.98715 1.69897 1.39282 1.24091 1.20454 0.86556 0.78949 0.79905 0.82688 1.19784 1.21270 1.21330 1.60776 1.03703 1.62969 1.03686 1.22039 0.97638 0.95423 0.91648 1.21070 0.98019 0.95517 0.94152 1.20898 0.97074 0.93931 0.96857 1.21539 0.94654 1.00528 0.97736 1.21045 0.98810 0.95063 0.95483 1.21516 0.96017 0.99380 0.97359 1.21031 0.95516 0.96016 0.97767 1.21584 0.98228 0.99432 0.95418 1.21510 1.00772 0.94895 0.97067 1.21050 0.95320 0.98701 0.94900 1.21546 0.96081 0.96008 1.00895 0.95411 0.95936 0.91273 0.97239 0.89074 0.93286 0.85930 0.97103 0.91245 0.92126 0.89558 0.90880 0.92795 0.91931 0.92414 0.92693 0.92125 0.92497 0.92515 0.92374 0.92602 0.91866 0.92807 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 9.40 37.15 0.35 -2.42 16 2 C -0.15 -3.41 5.51 -26.73 -0.15 -3.56 16 3 C 0.22 5.29 2.33 -68.87 -0.16 5.13 16 4 H 0.03 0.81 7.70 -51.93 -0.40 0.41 16 5 C -0.48 -12.98 7.25 -34.44 -0.25 -13.23 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.52 5.28 -17.82 -0.09 1.43 16 8 N -0.90 -25.39 11.38 55.43 0.63 -24.76 16 9 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 N -0.68 -14.00 5.66 -107.96 -0.61 -14.61 16 14 C 0.06 1.10 4.19 -3.82 -0.02 1.08 16 15 C -0.07 -1.00 2.12 -90.63 -0.19 -1.19 16 16 C -0.07 -0.99 2.61 -90.62 -0.24 -1.23 16 17 C -0.11 -1.53 4.92 -26.73 -0.13 -1.66 16 18 C -0.09 -1.05 3.20 -90.62 -0.29 -1.34 16 19 C -0.11 -1.15 5.19 -26.73 -0.14 -1.29 16 20 C -0.08 -0.93 3.19 -90.62 -0.29 -1.22 16 21 C -0.11 -1.33 5.19 -26.73 -0.14 -1.47 16 22 C -0.10 -1.16 5.19 -26.73 -0.14 -1.30 16 23 C -0.08 -1.02 2.72 -90.62 -0.25 -1.27 16 24 C -0.11 -1.34 4.92 -26.73 -0.13 -1.48 16 25 H 0.03 0.53 6.63 -51.93 -0.34 0.19 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 1.62 6.85 -51.93 -0.36 1.27 16 28 H 0.01 0.20 7.50 -51.92 -0.39 -0.19 16 29 H 0.09 2.42 6.22 -51.93 -0.32 2.09 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.32 6.47 6.70 -39.29 -0.26 6.21 16 32 H 0.01 0.20 7.54 -51.93 -0.39 -0.19 16 33 H 0.07 1.29 4.61 -51.93 -0.24 1.05 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.09 1.45 7.75 -51.93 -0.40 1.04 16 36 H 0.07 1.21 6.32 -51.93 -0.33 0.88 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.07 0.90 6.54 -51.93 -0.34 0.56 16 LS Contribution 337.47 15.07 5.09 5.09 Total: -1.00 -26.73 337.47 -10.99 -37.71 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -8.82 Total: 5.22 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: -2.25 Total: -25.01 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.02 Total: -39.37 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -26.73 -10.99 -37.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822132694.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.592 kcal (2) G-P(sol) polarization free energy of solvation -26.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds