Wall clock time and date at job start Mon Mar 30 2020 07:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47187 * 2 1 4 4 H 1.08995 * 109.47115 * 185.15847 * 3 2 1 5 5 C 1.50696 * 109.46858 * 305.15903 * 3 2 1 6 6 H 1.08001 * 119.99797 * 119.99768 * 5 3 2 7 7 C 1.37873 * 119.99896 * 299.99793 * 5 3 2 8 8 N 1.31518 * 120.00153 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99945 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47243 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47153 * 119.99793 * 9 7 5 12 12 H 1.48504 * 109.47187 * 239.99792 * 9 7 5 13 13 N 1.46896 * 109.46963 * 65.15887 * 3 2 1 14 14 C 1.46901 * 111.00577 * 85.89931 * 13 3 2 15 15 C 1.52998 * 109.47777 * 174.82045 * 14 13 3 16 16 C 1.52999 * 109.47177 * 295.00678 * 15 14 13 17 17 C 1.53000 * 109.46680 * 299.99661 * 16 15 14 18 18 C 1.53004 * 109.47329 * 299.99802 * 17 16 15 19 19 C 1.53001 * 109.47156 * 300.00456 * 18 17 16 20 20 C 1.52999 * 109.46845 * 59.99550 * 19 18 17 21 21 C 1.52997 * 109.47719 * 299.99696 * 20 19 18 22 22 C 1.52999 * 109.47295 * 60.00227 * 20 19 18 23 23 C 1.52991 * 109.47185 * 175.00129 * 15 14 13 24 24 C 1.52999 * 109.46837 * 60.00139 * 18 17 16 25 25 H 1.09000 * 109.47736 * 294.84638 * 1 2 3 26 26 H 1.09002 * 109.47362 * 174.84627 * 1 2 3 27 27 H 1.09003 * 109.46846 * 54.85127 * 1 2 3 28 28 H 1.09008 * 109.46894 * 119.99813 * 2 1 3 29 29 H 1.08995 * 109.47576 * 239.99573 * 2 1 3 30 30 H 0.96999 * 119.99932 * 179.97438 * 8 7 5 31 31 H 1.00902 * 110.99920 * 321.94572 * 13 3 2 32 32 H 1.08998 * 109.46976 * 294.82816 * 14 13 3 33 33 H 1.09004 * 109.46501 * 54.82186 * 14 13 3 34 34 H 1.09006 * 109.46343 * 54.99931 * 15 14 13 35 35 H 1.08995 * 109.47278 * 59.99281 * 16 15 14 36 36 H 1.09005 * 109.47461 * 60.00242 * 17 16 15 37 37 H 1.09004 * 109.46970 * 179.97438 * 17 16 15 38 38 H 1.08997 * 109.47282 * 179.97438 * 18 17 16 39 39 H 1.08994 * 109.46733 * 299.99772 * 19 18 17 40 40 H 1.08996 * 109.46962 * 179.97438 * 19 18 17 41 41 H 1.09005 * 109.46932 * 179.97438 * 20 19 18 42 42 H 1.08996 * 109.47786 * 179.97438 * 21 20 19 43 43 H 1.09004 * 109.46992 * 300.01035 * 21 20 19 44 44 H 1.08997 * 109.47040 * 179.97438 * 22 20 19 45 45 H 1.09001 * 109.46897 * 59.99380 * 22 20 19 46 46 H 1.09004 * 109.47430 * 300.00039 * 23 15 14 47 47 H 1.08996 * 109.47542 * 180.02562 * 24 18 17 48 48 H 1.09005 * 109.46849 * 60.00236 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1260 1.4439 -0.0924 5 6 1.4360 2.1888 -1.1616 6 1 0.8268 3.0627 -0.9839 7 6 1.6612 1.7559 -2.4511 8 7 2.4026 0.6914 -2.6674 9 14 0.9131 2.6814 -3.8910 10 1 0.1267 3.8343 -3.3836 11 1 1.9963 3.1732 -4.7798 12 1 0.0212 1.7719 -4.6544 13 7 1.6546 2.0981 1.2568 14 6 2.6430 1.8367 2.3117 15 6 2.2774 2.6374 3.5631 16 6 2.3917 4.1333 3.2629 17 6 3.8274 4.4620 2.8486 18 6 4.7831 4.0956 3.9859 19 6 4.4174 4.8962 5.2373 20 6 2.9817 4.5675 5.6515 21 6 2.0260 4.9340 4.5144 22 6 2.8673 3.0716 5.9517 23 6 3.2330 2.2709 4.7003 24 6 4.6687 2.5997 4.2860 25 1 -0.3634 0.4318 0.9325 26 1 -0.3634 -1.0235 -0.0923 27 1 -0.3633 0.5917 -0.8403 28 1 1.8933 -0.5138 0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 2.5607 0.3866 -3.5746 31 1 0.7319 1.8104 1.5466 32 1 2.6480 0.7730 2.5494 33 1 3.6321 2.1361 1.9649 34 1 1.2546 2.4031 3.8582 35 1 1.7109 4.3943 2.4527 36 1 4.0879 3.8916 1.9570 37 1 3.9087 5.5276 2.6343 38 1 5.8059 4.3293 3.6905 39 1 4.4988 5.9619 5.0234 40 1 5.0979 4.6349 6.0476 41 1 2.7213 5.1375 6.5434 42 1 1.0033 4.6993 4.8093 43 1 2.1076 5.9997 4.3005 44 1 1.8446 2.8375 6.2473 45 1 3.5482 2.8105 6.7619 46 1 3.1516 1.2051 4.9142 47 1 5.3492 2.3386 5.0965 48 1 4.9293 2.0293 3.3944 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822132694.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:40 Heat of formation + Delta-G solvation = -54.057997 kcal Electronic energy + Delta-G solvation = -23495.025460 eV Core-core repulsion = 20546.729177 eV Total energy + Delta-G solvation = -2948.296283 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.35387 -38.29736 -35.22423 -33.57964 -33.41594 -33.38288 -31.63584 -28.71179 -27.02949 -26.65353 -25.13669 -24.31801 -22.24583 -22.21280 -21.44265 -20.97466 -18.42362 -17.84253 -16.75785 -16.39223 -15.92734 -15.81961 -15.46186 -15.18682 -14.82448 -14.49923 -14.35220 -14.25075 -14.08740 -13.98886 -13.51453 -13.41195 -13.17974 -13.14995 -12.86296 -12.69051 -12.44232 -12.40686 -12.04463 -11.79899 -11.68018 -11.65192 -11.63096 -11.48879 -11.45057 -11.35449 -10.92014 -10.43606 -10.41807 -10.39216 -10.27834 -8.82849 -8.04388 -6.12443 1.40829 1.43649 1.54856 2.46003 3.24285 3.56743 3.65734 3.72835 3.90802 4.21596 4.30625 4.31561 4.42763 4.44481 4.51025 4.52142 4.54439 4.57015 4.60402 4.63624 4.72053 4.75369 4.82501 4.87183 4.92868 4.98190 5.05137 5.10871 5.15478 5.23103 5.24124 5.27673 5.31205 5.33132 5.35710 5.39297 5.42787 5.44316 5.65359 5.70025 5.72530 5.74740 5.78629 5.81111 5.87770 6.34750 6.73748 6.91794 7.02630 7.55584 9.01230 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.026021 B = 0.004741 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.783883 B = 5903.924671 C = 6232.674798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.138 4.138 3 C 0.224 3.776 4 H -0.010 1.010 5 C -0.493 4.493 6 H 0.051 0.949 7 C 0.012 3.988 8 N -0.923 5.923 9 Si 0.950 3.050 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.282 1.282 13 N -0.680 5.680 14 C 0.068 3.932 15 C -0.061 4.061 16 C -0.068 4.068 17 C -0.106 4.106 18 C -0.084 4.084 19 C -0.102 4.102 20 C -0.083 4.083 21 C -0.105 4.105 22 C -0.101 4.101 23 C -0.079 4.079 24 C -0.108 4.108 25 H 0.049 0.951 26 H 0.040 0.960 27 H 0.046 0.954 28 H 0.021 0.979 29 H 0.060 0.940 30 H 0.258 0.742 31 H 0.329 0.671 32 H 0.006 0.994 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.037 0.963 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.073 0.927 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.803 5.705 18.400 19.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.178 4.178 3 C 0.115 3.885 4 H 0.008 0.992 5 C -0.532 4.532 6 H 0.070 0.930 7 C -0.186 4.186 8 N -0.564 5.564 9 Si 0.777 3.223 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.208 1.208 13 N -0.310 5.310 14 C -0.061 4.061 15 C -0.080 4.080 16 C -0.087 4.087 17 C -0.144 4.144 18 C -0.102 4.102 19 C -0.139 4.139 20 C -0.101 4.101 21 C -0.143 4.143 22 C -0.138 4.138 23 C -0.098 4.098 24 C -0.145 4.145 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.039 0.961 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.147 0.853 32 H 0.024 0.976 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.083 0.917 47 H 0.092 0.908 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.144 6.224 18.079 19.240 hybrid contribution -0.312 -0.917 -1.392 1.696 sum 1.832 5.307 16.687 17.607 Atomic orbital electron populations 1.21466 0.95811 0.99529 1.00881 1.21947 0.96597 1.00200 0.99044 1.18909 0.93125 0.89310 0.87161 0.99208 1.21305 1.29974 1.11122 0.90815 0.93042 1.25596 0.96021 0.95908 1.01045 1.70030 1.40237 1.25233 1.20866 0.85621 0.78178 0.78846 0.79672 1.19351 1.21157 1.20753 1.60661 1.04555 1.62514 1.03318 1.22035 0.96197 0.95692 0.92196 1.21002 0.98710 0.95071 0.93209 1.20826 0.96299 0.94228 0.97331 1.21491 0.95450 1.00019 0.97424 1.21031 0.98309 0.95305 0.95567 1.21507 0.96380 0.99338 0.96675 1.21058 0.94984 0.96254 0.97811 1.21547 0.98965 0.99177 0.94568 1.21502 1.01628 0.94463 0.96251 1.21044 0.94598 0.99270 0.94887 1.21545 0.96532 0.95843 1.00620 0.93219 0.94048 0.93530 0.96080 0.92190 0.93319 0.85326 0.97591 0.92841 0.91964 0.92685 0.94405 0.92606 0.91620 0.91860 0.90915 0.89943 0.92041 0.92054 0.91766 0.90776 0.91715 0.90815 0.93844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 9.40 71.98 0.68 -4.39 16 2 C -0.14 -6.63 5.51 30.59 0.17 -6.46 16 3 C 0.22 11.38 2.33 44.17 0.10 11.48 16 4 H -0.01 -0.58 7.70 -2.39 -0.02 -0.60 16 5 C -0.49 -27.24 7.25 25.60 0.19 -27.06 16 6 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 7 C 0.01 0.67 5.28 84.65 0.45 1.12 16 8 N -0.92 -53.66 11.38 21.45 0.24 -53.42 16 9 Si 0.95 44.49 29.54 68.60 2.03 46.51 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 N -0.68 -28.82 5.66 -495.46 -2.80 -31.62 16 14 C 0.07 2.49 4.19 86.30 0.36 2.85 16 15 C -0.06 -1.75 2.12 -10.80 -0.02 -1.77 16 16 C -0.07 -1.95 2.61 -10.79 -0.03 -1.98 16 17 C -0.11 -3.08 4.92 30.60 0.15 -2.93 16 18 C -0.08 -1.95 3.20 -10.79 -0.03 -1.99 16 19 C -0.10 -1.88 5.19 30.59 0.16 -1.73 16 20 C -0.08 -1.52 3.19 -10.80 -0.03 -1.56 16 21 C -0.11 -2.34 5.19 30.59 0.16 -2.18 16 22 C -0.10 -1.88 5.19 30.59 0.16 -1.72 16 23 C -0.08 -1.85 2.72 -10.80 -0.03 -1.88 16 24 C -0.11 -2.56 4.92 30.59 0.15 -2.41 16 25 H 0.05 1.86 6.63 -2.39 -0.02 1.84 16 26 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.05 2.18 6.85 -2.39 -0.02 2.16 16 28 H 0.02 0.93 7.50 -2.38 -0.02 0.91 16 29 H 0.06 3.27 6.22 -2.39 -0.01 3.26 16 30 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 31 H 0.33 13.21 6.70 -89.69 -0.60 12.61 16 32 H 0.01 0.22 7.54 -2.39 -0.02 0.20 16 33 H 0.05 2.13 4.61 -2.38 -0.01 2.11 16 34 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.05 1.90 7.75 -2.39 -0.02 1.88 16 36 H 0.04 1.34 6.32 -2.38 -0.02 1.32 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 42 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 44 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.04 1.21 6.54 -2.38 -0.02 1.19 16 Total: -1.00 -58.92 337.47 2.35 -56.57 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: 0.31 Total: 24.56 kcal Atomic # 6 Polarization: -45.18 SS G_CDS: 2.57 Total: -42.61 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -2.56 Total: -85.04 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -58.92 2.35 -56.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822132694.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.513 kcal (2) G-P(sol) polarization free energy of solvation -58.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds