Wall clock time and date at job start Mon Mar 30 2020 07:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46905 * 111.00016 * 2 1 4 4 C 1.52997 * 109.46930 * 70.32702 * 3 2 1 5 5 C 1.50699 * 115.55412 * 294.84727 * 4 3 2 6 6 H 1.07997 * 120.00109 * 144.31628 * 5 4 3 7 7 C 1.37879 * 119.99608 * 324.31124 * 5 4 3 8 8 N 1.31514 * 120.00322 * 357.73391 * 7 5 4 9 9 Si 1.86799 * 119.99698 * 177.73286 * 7 5 4 10 10 H 1.48496 * 109.47260 * 5.00382 * 9 7 5 11 11 H 1.48501 * 109.47206 * 125.00185 * 9 7 5 12 12 H 1.48501 * 109.47372 * 244.99881 * 9 7 5 13 13 C 1.53000 * 117.49660 * 149.17263 * 4 3 2 14 14 C 1.53001 * 117.49655 * 80.51523 * 4 3 2 15 15 C 1.46902 * 111.00355 * 236.04828 * 2 1 3 16 16 H 1.08998 * 109.46777 * 52.30329 * 15 2 1 17 17 C 1.52993 * 109.47637 * 172.30653 * 15 2 1 18 18 C 1.52996 * 109.47573 * 179.97438 * 17 15 2 19 19 C 1.52995 * 109.47074 * 300.00047 * 18 17 15 20 20 C 1.53003 * 109.47241 * 59.99855 * 19 18 17 21 21 C 1.52996 * 109.47205 * 300.00064 * 20 19 18 22 22 H 1.08995 * 109.47700 * 180.02562 * 21 20 19 23 23 C 1.53008 * 109.47146 * 300.00163 * 21 20 19 24 24 C 1.53000 * 117.49436 * 254.92389 * 23 21 20 25 25 C 1.52999 * 117.50031 * 186.26495 * 23 21 20 26 26 H 1.09002 * 109.47018 * 174.09079 * 1 2 3 27 27 H 1.09000 * 109.47245 * 294.08929 * 1 2 3 28 28 H 1.08999 * 109.47342 * 54.09043 * 1 2 3 29 29 H 1.08998 * 109.47052 * 190.32930 * 3 2 1 30 30 H 1.08999 * 109.46927 * 310.33113 * 3 2 1 31 31 H 0.96994 * 120.00165 * 185.00658 * 8 7 5 32 32 H 1.08994 * 117.49983 * 0.02562 * 13 4 3 33 33 H 1.09002 * 117.49641 * 145.02766 * 13 4 3 34 34 H 1.09004 * 117.50161 * 214.97749 * 14 4 3 35 35 H 1.09007 * 117.50159 * 359.97335 * 14 4 3 36 36 H 1.09006 * 109.47011 * 300.00230 * 17 15 2 37 37 H 1.09004 * 109.46922 * 59.99852 * 17 15 2 38 38 H 1.09004 * 109.47003 * 60.00042 * 18 17 15 39 39 H 1.08999 * 109.47219 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.47094 * 179.97438 * 19 18 17 41 41 H 1.08997 * 109.47393 * 300.00187 * 19 18 17 42 42 H 1.08997 * 109.47414 * 179.97438 * 20 19 18 43 43 H 1.09004 * 109.47009 * 59.99900 * 20 19 18 44 44 H 1.08998 * 115.54996 * 40.59053 * 23 21 20 45 45 H 1.08999 * 117.50305 * 359.97438 * 24 23 21 46 46 H 1.08999 * 117.49496 * 145.02116 * 24 23 21 47 47 H 1.08999 * 117.49967 * 214.97623 * 25 23 21 48 48 H 1.08999 * 117.49739 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.7248 2.0216 1.3583 5 6 0.2724 2.2342 1.6994 6 1 -0.0645 2.1238 2.7195 7 6 -0.6263 2.5699 0.7090 8 7 -0.2085 2.7482 -0.5252 9 14 -2.4372 2.7715 1.1204 10 1 -2.6296 2.6381 2.5868 11 1 -2.8984 4.1128 0.6807 12 1 -3.2234 1.7238 0.4206 13 6 2.7271 3.0660 1.8538 14 6 2.6776 1.6822 2.5063 15 6 1.9955 -0.7659 -1.1376 16 1 1.5390 -0.4066 -2.0599 17 6 3.5127 -0.5856 -1.2155 18 6 4.0612 -1.3838 -2.3999 19 6 3.7328 -2.8662 -2.2116 20 6 2.2155 -3.0466 -2.1338 21 6 1.6670 -2.2484 -0.9494 22 1 0.5862 -2.3773 -0.8936 23 6 2.3077 -2.7522 0.3456 24 6 1.4489 -3.6205 1.2672 25 6 1.7815 -2.1798 1.6633 26 1 -0.3633 -1.0222 -0.1058 27 1 -0.3634 0.4194 0.9382 28 1 -0.3634 0.6027 -0.8323 29 1 3.0694 1.3484 -0.1843 30 1 1.5047 1.9490 -0.7834 31 1 -0.8266 3.0548 -1.2069 32 1 3.5790 3.2902 1.2119 33 1 2.3360 3.9067 2.4268 34 1 2.2541 1.6131 3.5083 35 1 3.4970 0.9953 2.2939 36 1 3.7467 0.4707 -1.3491 37 1 3.9691 -0.9449 -0.2931 38 1 3.6048 -1.0249 -3.3224 39 1 5.1422 -1.2556 -2.4551 40 1 4.1232 -3.4348 -3.0557 41 1 4.1891 -3.2251 -1.2891 42 1 1.9815 -4.1028 -2.0002 43 1 1.7591 -2.6877 -3.0564 44 1 3.3716 -2.9813 0.2856 45 1 0.4275 -3.8326 0.9513 46 1 1.9480 -4.4206 1.8139 47 1 2.4992 -2.0327 2.4704 48 1 0.9792 -1.4441 1.6077 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829188748.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:56 Heat of formation + Delta-G solvation = 62.788313 kcal Electronic energy + Delta-G solvation = -24178.954574 eV Core-core repulsion = 21235.725127 eV Total energy + Delta-G solvation = -2943.229447 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.61537 -36.98515 -35.42465 -34.13822 -32.33213 -30.34411 -28.77827 -26.24252 -25.68146 -23.21794 -22.53935 -21.65021 -21.16650 -21.02923 -20.27298 -18.70264 -17.82388 -16.11145 -15.86510 -14.89453 -14.76605 -14.26928 -13.98832 -13.68809 -13.58314 -13.26685 -13.11692 -12.45060 -12.40460 -12.22370 -11.90027 -11.57784 -11.37726 -11.13964 -11.00062 -10.83037 -10.76288 -10.62174 -10.47668 -10.40250 -10.28422 -10.02884 -9.94558 -9.72034 -9.60540 -9.38594 -9.22762 -9.04280 -8.72680 -8.53132 -7.97687 -6.92724 -5.85070 -4.02557 3.22165 3.32491 3.36089 4.32672 4.47224 4.81403 4.95819 5.07334 5.12660 5.36155 5.43828 5.54625 5.60063 5.67745 5.71111 5.81098 5.88487 5.92730 5.98711 6.02128 6.05498 6.13770 6.22693 6.29871 6.33765 6.36231 6.47773 6.58088 6.60378 6.67461 6.69810 6.74727 6.79952 6.83173 6.86629 6.91162 6.98656 7.08348 7.16840 7.27765 7.41888 7.45383 7.63414 7.68345 8.11565 8.46150 8.53465 8.56143 8.91177 9.49526 10.93160 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.018499 B = 0.006734 C = 0.006429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.248891 B = 4156.860901 C = 4353.966761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.509 5.509 3 C 0.073 3.927 4 C 0.065 3.935 5 C -0.470 4.470 6 H 0.058 0.942 7 C 0.072 3.928 8 N -0.879 5.879 9 Si 0.883 3.117 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.280 1.280 13 C -0.211 4.211 14 C -0.198 4.198 15 C 0.095 3.905 16 H 0.025 0.975 17 C -0.114 4.114 18 C -0.117 4.117 19 C -0.117 4.117 20 C -0.110 4.110 21 C -0.047 4.047 22 H 0.066 0.934 23 C -0.131 4.131 24 C -0.207 4.207 25 C -0.142 4.142 26 H 0.017 0.983 27 H 0.104 0.896 28 H 0.039 0.961 29 H 0.031 0.969 30 H 0.102 0.898 31 H 0.258 0.742 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.066 -9.526 -2.964 11.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.232 5.232 3 C -0.054 4.054 4 C 0.064 3.936 5 C -0.507 4.507 6 H 0.076 0.924 7 C -0.129 4.129 8 N -0.518 5.518 9 Si 0.711 3.289 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.206 1.206 13 C -0.250 4.250 14 C -0.235 4.235 15 C -0.014 4.014 16 H 0.043 0.957 17 C -0.152 4.152 18 C -0.155 4.155 19 C -0.154 4.154 20 C -0.148 4.148 21 C -0.066 4.066 22 H 0.084 0.916 23 C -0.149 4.149 24 C -0.244 4.244 25 C -0.179 4.179 26 H 0.036 0.964 27 H 0.122 0.878 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.119 0.881 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.110 0.890 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.095 0.905 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.112 -9.756 -2.731 11.347 hybrid contribution -1.103 0.567 -0.531 1.349 sum 4.009 -9.189 -3.262 10.543 Atomic orbital electron populations 1.22953 0.87897 0.96967 1.05631 1.62074 1.07932 1.14532 1.38637 1.22192 0.95759 0.87876 0.99591 1.18891 0.90273 0.94096 0.90311 1.20608 0.90853 1.45360 0.93886 0.92356 1.24916 0.98386 0.94754 0.94807 1.69740 1.34443 1.46172 1.01449 0.86676 0.85611 0.77817 0.78797 1.19663 1.21076 1.20641 1.22957 1.03701 0.92620 1.05705 1.22724 1.04326 0.97771 0.98707 1.21445 0.94138 0.92882 0.92980 0.95737 1.21697 0.95806 0.99731 0.97932 1.21536 0.99826 0.95261 0.98907 1.21546 0.96347 0.96468 1.01088 1.21501 0.95630 0.99515 0.98156 1.20706 0.98916 0.94385 0.92590 0.91613 1.22000 0.97431 1.03611 0.91837 1.23018 1.00169 0.95409 1.05835 1.23031 1.04286 0.94225 0.96320 0.96389 0.87830 0.94240 0.95074 0.88105 0.93054 0.92124 0.90913 0.91385 0.91505 0.91723 0.91372 0.92560 0.92654 0.92970 0.91830 0.92434 0.92549 0.89013 0.89967 0.90412 0.90477 0.85775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 6.32 60.06 0.38 0.66 16 2 N -0.51 -10.29 2.39 -234.89 -0.56 -10.85 16 3 C 0.07 1.64 4.37 -3.82 -0.02 1.62 16 4 C 0.07 1.55 2.03 -155.66 -0.32 1.23 16 5 C -0.47 -12.02 6.88 -34.44 -0.24 -12.26 16 6 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 7 C 0.07 1.82 3.12 -17.82 -0.06 1.76 16 8 N -0.88 -22.62 8.46 55.43 0.47 -22.15 16 9 Si 0.88 20.07 29.41 -169.99 -5.00 15.07 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 C -0.21 -4.77 9.93 -26.69 -0.26 -5.03 16 14 C -0.20 -4.32 9.96 -26.69 -0.27 -4.58 16 15 C 0.09 1.68 1.67 -67.71 -0.11 1.56 16 16 H 0.02 0.48 8.10 -51.93 -0.42 0.06 16 17 C -0.11 -1.83 4.39 -26.74 -0.12 -1.95 16 18 C -0.12 -1.56 5.92 -26.74 -0.16 -1.72 16 19 C -0.12 -1.43 5.69 -26.73 -0.15 -1.59 16 20 C -0.11 -1.45 5.45 -26.73 -0.15 -1.60 16 21 C -0.05 -0.73 2.21 -90.61 -0.20 -0.93 16 22 H 0.07 1.11 6.24 -51.93 -0.32 0.78 16 23 C -0.13 -1.98 3.77 -90.62 -0.34 -2.33 16 24 C -0.21 -3.01 10.18 -26.69 -0.27 -3.28 16 25 C -0.14 -2.37 9.16 -26.69 -0.24 -2.62 16 26 H 0.02 0.35 6.04 -51.93 -0.31 0.04 16 27 H 0.10 2.48 4.47 -51.93 -0.23 2.25 16 28 H 0.04 0.94 6.12 -51.93 -0.32 0.62 16 29 H 0.03 0.68 5.28 -51.93 -0.27 0.40 16 30 H 0.10 2.58 5.15 -51.93 -0.27 2.31 16 31 H 0.26 6.49 8.32 -40.82 -0.34 6.15 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 34 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 35 H 0.07 1.39 8.14 -51.92 -0.42 0.97 16 36 H 0.06 1.12 6.02 -51.93 -0.31 0.81 16 37 H 0.07 1.13 6.98 -51.93 -0.36 0.77 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.78 6.20 -51.93 -0.32 0.46 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.09 1.35 5.81 -51.93 -0.30 1.05 16 45 H 0.08 1.19 8.09 -51.93 -0.42 0.77 16 46 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 48 H 0.12 2.40 5.22 -51.93 -0.27 2.13 16 LS Contribution 338.03 15.07 5.09 5.09 Total: -1.00 -24.27 338.03 -10.85 -35.12 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -8.33 Total: 8.75 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: -2.52 Total: -31.03 kcal Atomic # 7 Polarization: -32.91 SS G_CDS: -0.09 Total: -33.00 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.00 Total: 15.07 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -24.27 -10.85 -35.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829188748.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.913 kcal (2) G-P(sol) polarization free energy of solvation -24.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds