Wall clock time and date at job start Mon Mar 30 2020 07:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46905 * 111.00016 * 2 1 4 4 C 1.52997 * 109.46930 * 70.32702 * 3 2 1 5 5 C 1.50699 * 115.55412 * 294.84727 * 4 3 2 6 6 H 1.07997 * 120.00109 * 144.31628 * 5 4 3 7 7 C 1.37879 * 119.99608 * 324.31124 * 5 4 3 8 8 N 1.31514 * 120.00322 * 357.73391 * 7 5 4 9 9 Si 1.86799 * 119.99698 * 177.73286 * 7 5 4 10 10 H 1.48496 * 109.47260 * 5.00382 * 9 7 5 11 11 H 1.48501 * 109.47206 * 125.00185 * 9 7 5 12 12 H 1.48501 * 109.47372 * 244.99881 * 9 7 5 13 13 C 1.53000 * 117.49660 * 149.17263 * 4 3 2 14 14 C 1.53001 * 117.49655 * 80.51523 * 4 3 2 15 15 C 1.46902 * 111.00355 * 236.04828 * 2 1 3 16 16 H 1.08998 * 109.46777 * 52.30329 * 15 2 1 17 17 C 1.52993 * 109.47637 * 172.30653 * 15 2 1 18 18 C 1.52996 * 109.47573 * 179.97438 * 17 15 2 19 19 C 1.52995 * 109.47074 * 300.00047 * 18 17 15 20 20 C 1.53003 * 109.47241 * 59.99855 * 19 18 17 21 21 C 1.52996 * 109.47205 * 300.00064 * 20 19 18 22 22 H 1.08995 * 109.47700 * 180.02562 * 21 20 19 23 23 C 1.53008 * 109.47146 * 300.00163 * 21 20 19 24 24 C 1.53000 * 117.49436 * 254.92389 * 23 21 20 25 25 C 1.52999 * 117.50031 * 186.26495 * 23 21 20 26 26 H 1.09002 * 109.47018 * 174.09079 * 1 2 3 27 27 H 1.09000 * 109.47245 * 294.08929 * 1 2 3 28 28 H 1.08999 * 109.47342 * 54.09043 * 1 2 3 29 29 H 1.08998 * 109.47052 * 190.32930 * 3 2 1 30 30 H 1.08999 * 109.46927 * 310.33113 * 3 2 1 31 31 H 0.96994 * 120.00165 * 185.00658 * 8 7 5 32 32 H 1.08994 * 117.49983 * 0.02562 * 13 4 3 33 33 H 1.09002 * 117.49641 * 145.02766 * 13 4 3 34 34 H 1.09004 * 117.50161 * 214.97749 * 14 4 3 35 35 H 1.09007 * 117.50159 * 359.97335 * 14 4 3 36 36 H 1.09006 * 109.47011 * 300.00230 * 17 15 2 37 37 H 1.09004 * 109.46922 * 59.99852 * 17 15 2 38 38 H 1.09004 * 109.47003 * 60.00042 * 18 17 15 39 39 H 1.08999 * 109.47219 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.47094 * 179.97438 * 19 18 17 41 41 H 1.08997 * 109.47393 * 300.00187 * 19 18 17 42 42 H 1.08997 * 109.47414 * 179.97438 * 20 19 18 43 43 H 1.09004 * 109.47009 * 59.99900 * 20 19 18 44 44 H 1.08998 * 115.54996 * 40.59053 * 23 21 20 45 45 H 1.08999 * 117.50305 * 359.97438 * 24 23 21 46 46 H 1.08999 * 117.49496 * 145.02116 * 24 23 21 47 47 H 1.08999 * 117.49967 * 214.97623 * 25 23 21 48 48 H 1.08999 * 117.49739 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.7248 2.0216 1.3583 5 6 0.2724 2.2342 1.6994 6 1 -0.0645 2.1238 2.7195 7 6 -0.6263 2.5699 0.7090 8 7 -0.2085 2.7482 -0.5252 9 14 -2.4372 2.7715 1.1204 10 1 -2.6296 2.6381 2.5868 11 1 -2.8984 4.1128 0.6807 12 1 -3.2234 1.7238 0.4206 13 6 2.7271 3.0660 1.8538 14 6 2.6776 1.6822 2.5063 15 6 1.9955 -0.7659 -1.1376 16 1 1.5390 -0.4066 -2.0599 17 6 3.5127 -0.5856 -1.2155 18 6 4.0612 -1.3838 -2.3999 19 6 3.7328 -2.8662 -2.2116 20 6 2.2155 -3.0466 -2.1338 21 6 1.6670 -2.2484 -0.9494 22 1 0.5862 -2.3773 -0.8936 23 6 2.3077 -2.7522 0.3456 24 6 1.4489 -3.6205 1.2672 25 6 1.7815 -2.1798 1.6633 26 1 -0.3633 -1.0222 -0.1058 27 1 -0.3634 0.4194 0.9382 28 1 -0.3634 0.6027 -0.8323 29 1 3.0694 1.3484 -0.1843 30 1 1.5047 1.9490 -0.7834 31 1 -0.8266 3.0548 -1.2069 32 1 3.5790 3.2902 1.2119 33 1 2.3360 3.9067 2.4268 34 1 2.2541 1.6131 3.5083 35 1 3.4970 0.9953 2.2939 36 1 3.7467 0.4707 -1.3491 37 1 3.9691 -0.9449 -0.2931 38 1 3.6048 -1.0249 -3.3224 39 1 5.1422 -1.2556 -2.4551 40 1 4.1232 -3.4348 -3.0557 41 1 4.1891 -3.2251 -1.2891 42 1 1.9815 -4.1028 -2.0002 43 1 1.7591 -2.6877 -3.0564 44 1 3.3716 -2.9813 0.2856 45 1 0.4275 -3.8326 0.9513 46 1 1.9480 -4.4206 1.8139 47 1 2.4992 -2.0327 2.4704 48 1 0.9792 -1.4441 1.6077 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829188748.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:55 Heat of formation + Delta-G solvation = 54.450138 kcal Electronic energy + Delta-G solvation = -24179.316145 eV Core-core repulsion = 21235.725127 eV Total energy + Delta-G solvation = -2943.591017 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.96887 -38.69665 -36.65442 -35.72660 -34.23978 -31.55256 -30.14273 -27.98087 -27.63104 -24.74381 -23.73835 -22.93310 -22.79181 -22.43972 -21.69885 -20.53675 -19.11327 -17.99612 -17.21778 -16.65599 -16.13161 -15.86971 -15.39501 -15.16527 -15.07414 -14.68448 -14.58438 -14.09664 -13.88662 -13.52281 -13.31435 -13.19906 -12.91567 -12.83803 -12.65066 -12.34058 -12.15568 -12.09066 -12.00723 -11.97463 -11.86454 -11.73745 -11.25965 -11.11862 -10.99190 -10.87695 -10.67116 -10.60319 -10.39308 -10.29225 -9.85319 -8.67797 -7.76905 -6.02765 1.37162 1.43684 1.51045 2.41782 3.03721 3.22860 3.43297 3.78027 3.86605 3.95896 4.19245 4.27059 4.36637 4.40474 4.41526 4.49280 4.54311 4.65053 4.65906 4.73148 4.81615 4.85193 4.88221 4.93847 4.98349 5.01043 5.06599 5.08423 5.12422 5.23387 5.25489 5.31373 5.35182 5.42090 5.42664 5.45829 5.50808 5.54805 5.61698 5.64230 5.66591 5.68679 5.77157 5.90572 6.20708 6.55864 6.73742 6.80874 6.99562 7.50490 8.95221 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.018499 B = 0.006734 C = 0.006429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.248891 B = 4156.860901 C = 4353.966761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.500 5.500 3 C 0.084 3.916 4 C 0.040 3.960 5 C -0.484 4.484 6 H 0.043 0.957 7 C 0.046 3.954 8 N -0.892 5.892 9 Si 0.929 3.071 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.278 1.278 13 C -0.211 4.211 14 C -0.178 4.178 15 C 0.093 3.907 16 H 0.002 0.998 17 C -0.108 4.108 18 C -0.113 4.113 19 C -0.112 4.112 20 C -0.106 4.106 21 C -0.043 4.043 22 H 0.049 0.951 23 C -0.124 4.124 24 C -0.187 4.187 25 C -0.162 4.162 26 H 0.031 0.969 27 H 0.081 0.919 28 H 0.014 0.986 29 H 0.039 0.961 30 H 0.072 0.928 31 H 0.256 0.744 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.054 0.946 44 H 0.105 0.895 45 H 0.081 0.919 46 H 0.099 0.901 47 H 0.076 0.924 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.278 -11.603 -3.306 13.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.222 5.222 3 C -0.044 4.044 4 C 0.040 3.960 5 C -0.522 4.522 6 H 0.062 0.938 7 C -0.154 4.154 8 N -0.531 5.531 9 Si 0.756 3.244 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.204 1.204 13 C -0.250 4.250 14 C -0.216 4.216 15 C -0.016 4.016 16 H 0.019 0.981 17 C -0.145 4.145 18 C -0.151 4.151 19 C -0.149 4.149 20 C -0.144 4.144 21 C -0.062 4.062 22 H 0.067 0.933 23 C -0.142 4.142 24 C -0.224 4.224 25 C -0.200 4.200 26 H 0.049 0.951 27 H 0.100 0.900 28 H 0.033 0.967 29 H 0.057 0.943 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.072 0.928 44 H 0.123 0.877 45 H 0.100 0.900 46 H 0.117 0.883 47 H 0.095 0.905 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.328 -11.837 -3.071 13.769 hybrid contribution -1.487 1.227 -0.412 1.971 sum 4.841 -10.609 -3.483 12.171 Atomic orbital electron populations 1.22662 0.89025 0.96951 1.03189 1.62090 1.06812 1.13385 1.39939 1.21944 0.95855 0.88596 0.97999 1.19011 0.89892 0.95511 0.91628 1.20682 0.92224 1.45969 0.93290 0.93828 1.25325 1.00857 0.94540 0.94664 1.69899 1.35028 1.46380 1.01788 0.85962 0.82470 0.77558 0.78403 1.19728 1.21104 1.20368 1.22961 1.03618 0.92653 1.05777 1.22656 1.03675 0.97349 0.97885 1.21562 0.95217 0.93949 0.90828 0.98053 1.21617 0.94310 0.99255 0.99342 1.21514 1.00728 0.95714 0.97152 1.21530 0.95376 0.95621 1.02399 1.21487 0.96430 0.99884 0.96629 1.20656 0.98180 0.93024 0.94348 0.93264 1.22016 0.98196 1.03290 0.90726 1.23048 1.00242 0.94485 1.04608 1.22856 1.04045 0.95415 0.97645 0.95072 0.90032 0.96735 0.94267 0.91091 0.93348 0.90966 0.91614 0.91524 0.90180 0.93537 0.91506 0.92869 0.90857 0.90623 0.91268 0.90736 0.92761 0.87694 0.89997 0.88257 0.90539 0.88761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.34 6.32 127.69 0.81 2.15 16 2 N -0.50 -20.52 2.39 -897.06 -2.15 -22.67 16 3 C 0.08 3.84 4.37 86.30 0.38 4.22 16 4 C 0.04 1.94 2.03 -52.93 -0.11 1.83 16 5 C -0.48 -25.39 6.88 25.60 0.18 -25.21 16 6 H 0.04 2.36 7.81 -2.91 -0.02 2.33 16 7 C 0.05 2.36 3.12 84.66 0.26 2.62 16 8 N -0.89 -47.19 8.46 21.45 0.18 -47.01 16 9 Si 0.93 41.93 29.41 68.60 2.02 43.95 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 13 C -0.21 -9.53 9.93 30.62 0.30 -9.22 16 14 C -0.18 -7.70 9.96 30.62 0.30 -7.40 16 15 C 0.09 3.28 1.67 44.91 0.07 3.36 16 16 H 0.00 0.06 8.10 -2.39 -0.02 0.04 16 17 C -0.11 -3.33 4.39 30.59 0.13 -3.20 16 18 C -0.11 -2.72 5.92 30.59 0.18 -2.54 16 19 C -0.11 -2.33 5.69 30.59 0.17 -2.15 16 20 C -0.11 -2.51 5.45 30.59 0.17 -2.34 16 21 C -0.04 -1.28 2.21 -10.79 -0.02 -1.31 16 22 H 0.05 1.62 6.24 -2.39 -0.01 1.60 16 23 C -0.12 -3.49 3.77 -10.79 -0.04 -3.53 16 24 C -0.19 -4.96 10.18 30.62 0.31 -4.64 16 25 C -0.16 -5.27 9.16 30.62 0.28 -4.99 16 26 H 0.03 1.27 6.04 -2.39 -0.01 1.26 16 27 H 0.08 4.04 4.47 -2.39 -0.01 4.03 16 28 H 0.01 0.71 6.12 -2.39 -0.01 0.69 16 29 H 0.04 1.71 5.28 -2.39 -0.01 1.70 16 30 H 0.07 3.75 5.15 -2.39 -0.01 3.74 16 31 H 0.26 13.21 8.32 -92.71 -0.77 12.44 16 32 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 33 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 34 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 35 H 0.08 3.22 8.14 -2.38 -0.02 3.20 16 36 H 0.05 1.59 6.02 -2.38 -0.01 1.58 16 37 H 0.07 2.09 6.98 -2.38 -0.02 2.07 16 38 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 41 H 0.07 1.40 6.20 -2.39 -0.01 1.38 16 42 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 44 H 0.11 2.72 5.81 -2.39 -0.01 2.71 16 45 H 0.08 2.19 8.09 -2.39 -0.02 2.17 16 46 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 48 H 0.09 3.68 5.22 -2.39 -0.01 3.66 16 Total: -1.00 -52.68 338.03 4.36 -48.32 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: 0.92 Total: 29.76 kcal Atomic # 6 Polarization: -55.74 SS G_CDS: 3.38 Total: -52.36 kcal Atomic # 7 Polarization: -67.71 SS G_CDS: -1.96 Total: -69.67 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.02 Total: 43.95 kcal Total: -52.68 4.36 -48.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829188748.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.766 kcal (2) G-P(sol) polarization free energy of solvation -52.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds