Wall clock time and date at job start Mon Mar 30 2020 07:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46902 * 111.00187 * 2 1 4 4 C 1.53003 * 109.46943 * 290.65074 * 3 2 1 5 5 C 1.50696 * 115.55060 * 147.56601 * 4 3 2 6 6 H 1.08000 * 120.00138 * 145.52884 * 5 4 3 7 7 C 1.37882 * 120.00040 * 325.51666 * 5 4 3 8 8 N 1.31516 * 119.99750 * 336.75741 * 7 5 4 9 9 Si 1.86796 * 119.99851 * 156.75090 * 7 5 4 10 10 H 1.48496 * 109.47245 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46927 * 120.00528 * 9 7 5 12 12 H 1.48502 * 109.47017 * 240.00586 * 9 7 5 13 13 C 1.52997 * 117.49790 * 1.84888 * 4 3 2 14 14 C 1.52997 * 60.00341 * 252.51661 * 13 4 3 15 15 C 1.46901 * 111.00393 * 123.95364 * 2 1 3 16 16 H 1.09004 * 109.47037 * 317.09995 * 15 2 1 17 17 C 1.52997 * 109.47341 * 197.10624 * 15 2 1 18 18 C 1.52996 * 109.47151 * 299.99770 * 17 15 2 19 19 C 1.53002 * 109.47383 * 300.00049 * 18 17 15 20 20 C 1.53003 * 109.46783 * 59.99434 * 19 18 17 21 21 C 1.52996 * 109.47624 * 300.00419 * 20 19 18 22 22 H 1.09002 * 109.47008 * 300.00228 * 21 20 19 23 23 C 1.52997 * 109.47151 * 179.97438 * 21 20 19 24 24 C 1.53004 * 117.49670 * 183.61605 * 23 21 20 25 25 C 1.52998 * 59.99912 * 252.50971 * 24 23 21 26 26 H 1.09001 * 109.46897 * 280.99780 * 1 2 3 27 27 H 1.08994 * 109.47372 * 40.99112 * 1 2 3 28 28 H 1.08996 * 109.47093 * 160.99755 * 1 2 3 29 29 H 1.08996 * 109.47305 * 50.64304 * 3 2 1 30 30 H 1.09000 * 109.47227 * 170.64858 * 3 2 1 31 31 H 0.96998 * 119.99523 * 185.01243 * 8 7 5 32 32 H 1.09002 * 117.50386 * 0.02562 * 13 4 3 33 33 H 1.09008 * 117.49556 * 145.02476 * 13 4 3 34 34 H 1.09007 * 117.49763 * 252.51329 * 14 13 4 35 35 H 1.08993 * 117.50401 * 107.49104 * 14 13 4 36 36 H 1.09001 * 109.47331 * 59.99610 * 17 15 2 37 37 H 1.09002 * 109.47353 * 179.97438 * 17 15 2 38 38 H 1.09004 * 109.47314 * 60.00204 * 18 17 15 39 39 H 1.09000 * 109.47651 * 180.02562 * 18 17 15 40 40 H 1.08996 * 109.47454 * 179.97438 * 19 18 17 41 41 H 1.09004 * 109.47022 * 300.00333 * 19 18 17 42 42 H 1.09005 * 109.46671 * 179.97438 * 20 19 18 43 43 H 1.09004 * 109.46607 * 60.00645 * 20 19 18 44 44 H 1.09001 * 115.56380 * 329.29856 * 23 21 20 45 45 H 1.08998 * 117.49756 * 145.02503 * 24 23 21 46 46 H 1.09000 * 117.49976 * 0.02562 * 24 23 21 47 47 H 1.08999 * 117.50283 * 107.48775 * 25 24 23 48 48 H 1.09006 * 117.49882 * 252.48870 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7033 2.0299 -1.3499 5 6 1.4558 3.5158 -1.3082 6 1 1.7819 4.1407 -2.1265 7 6 0.8129 4.0776 -0.2255 8 7 0.0270 3.3398 0.5280 9 14 1.0584 5.8863 0.1711 10 1 1.9829 6.4898 -0.8220 11 1 -0.2501 6.5867 0.1181 12 1 1.6370 6.0206 1.5321 13 6 0.9229 1.2118 -2.3807 14 6 2.4183 1.4669 -2.5798 15 6 1.9955 -0.7660 1.1376 16 1 1.4229 -0.5258 2.0335 17 6 3.4653 -0.4040 1.3596 18 6 4.2691 -0.7409 0.1022 19 6 4.1514 -2.2377 -0.1926 20 6 2.6815 -2.5996 -0.4145 21 6 1.8777 -2.2627 0.8429 22 1 2.2684 -2.8310 1.6870 23 6 0.4077 -2.6241 0.6206 24 6 -0.5804 -2.2828 1.7379 25 6 -0.1842 -3.7388 1.4854 26 1 -0.3633 0.1961 1.0088 27 1 -0.3634 0.7756 -0.6740 28 1 -0.3633 -0.9716 -0.3346 29 1 1.5173 1.9442 0.7946 30 1 3.0723 1.3472 0.1670 31 1 -0.4818 3.7496 1.2449 32 1 0.6173 0.2046 -2.0972 33 1 0.2301 1.7484 -3.0290 34 1 2.7093 2.1713 -3.3592 35 1 3.0968 0.6276 -2.4274 36 1 3.5493 0.6623 1.5695 37 1 3.8559 -0.9720 2.2040 38 1 3.8785 -0.1726 -0.7420 39 1 5.3164 -0.4835 0.2605 40 1 4.7237 -2.4777 -1.0886 41 1 4.5420 -2.8060 0.6516 42 1 2.5977 -3.6659 -0.6249 43 1 2.2909 -2.0313 -1.2587 44 1 0.0534 -2.5422 -0.4069 45 1 -1.5847 -1.9765 1.4453 46 1 -0.1832 -1.8004 2.6310 47 1 0.4736 -4.2149 2.2125 48 1 -0.9281 -4.3906 1.0270 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829188749.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:58 Heat of formation + Delta-G solvation = 64.433195 kcal Electronic energy + Delta-G solvation = -24141.508389 eV Core-core repulsion = 21198.350270 eV Total energy + Delta-G solvation = -2943.158120 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.87520 -37.02701 -35.96166 -33.59523 -32.14867 -30.47908 -29.08229 -26.64743 -25.32202 -23.72355 -22.59731 -22.29480 -21.20752 -20.71055 -19.94506 -18.81702 -18.09711 -16.31965 -15.77948 -14.92514 -14.72676 -14.54407 -14.32653 -13.96632 -13.55602 -13.37003 -12.75439 -12.61384 -12.35637 -11.91597 -11.81963 -11.60091 -11.44901 -11.23293 -11.17033 -11.00641 -10.78585 -10.72576 -10.57916 -10.49549 -10.18778 -10.12281 -10.05629 -9.81920 -9.78146 -9.50660 -9.24742 -9.05001 -8.82284 -8.46198 -7.85045 -7.09562 -6.05993 -3.98444 3.25273 3.35982 3.41473 4.06141 4.38931 4.73277 4.94020 5.03606 5.10959 5.18542 5.28809 5.33028 5.42148 5.61900 5.71623 5.78385 5.79456 5.87713 5.88579 5.98224 6.01445 6.08159 6.12124 6.22122 6.28283 6.32054 6.35535 6.45984 6.55617 6.56727 6.64183 6.66122 6.70631 6.73255 6.78377 6.81401 6.89333 7.04162 7.08315 7.23684 7.38971 7.47841 7.63792 7.64323 7.97049 8.19085 8.26989 8.63410 8.95150 9.53721 10.94122 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.019707 B = 0.006415 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.497850 B = 4363.567378 C = 4840.681917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.521 5.521 3 C 0.073 3.927 4 C 0.059 3.941 5 C -0.495 4.495 6 H 0.059 0.941 7 C 0.075 3.925 8 N -0.863 5.863 9 Si 0.879 3.121 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.283 1.283 13 C -0.199 4.199 14 C -0.208 4.208 15 C 0.092 3.908 16 H 0.033 0.967 17 C -0.120 4.120 18 C -0.118 4.118 19 C -0.111 4.111 20 C -0.101 4.101 21 C -0.040 4.040 22 H 0.059 0.941 23 C -0.127 4.127 24 C -0.176 4.176 25 C -0.194 4.194 26 H 0.015 0.985 27 H 0.088 0.912 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.259 0.741 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.051 0.949 38 H 0.085 0.915 39 H 0.047 0.953 40 H 0.053 0.947 41 H 0.048 0.952 42 H 0.046 0.954 43 H 0.080 0.920 44 H 0.109 0.891 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.086 0.914 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.013 -12.022 2.588 12.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.245 5.245 3 C -0.053 4.053 4 C 0.058 3.942 5 C -0.533 4.533 6 H 0.077 0.923 7 C -0.128 4.128 8 N -0.499 5.499 9 Si 0.706 3.294 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.209 1.209 13 C -0.237 4.237 14 C -0.245 4.245 15 C -0.017 4.017 16 H 0.051 0.949 17 C -0.158 4.158 18 C -0.155 4.155 19 C -0.149 4.149 20 C -0.139 4.139 21 C -0.059 4.059 22 H 0.077 0.923 23 C -0.145 4.145 24 C -0.213 4.213 25 C -0.231 4.231 26 H 0.033 0.967 27 H 0.107 0.893 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.099 0.901 44 H 0.127 0.873 45 H 0.109 0.891 46 H 0.107 0.893 47 H 0.104 0.896 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.103 -12.242 2.379 12.851 hybrid contribution -0.317 1.396 1.028 1.763 sum 2.786 -10.846 3.407 11.705 Atomic orbital electron populations 1.22816 0.87757 1.01270 1.00496 1.62049 1.07794 1.15087 1.39538 1.21953 0.97500 0.86170 0.99717 1.18912 0.96834 0.92464 0.86013 1.20594 1.38169 0.90475 1.04036 0.92276 1.24916 0.94315 0.97474 0.96132 1.70027 1.23895 1.35433 1.20545 0.86758 0.78135 0.86018 0.78454 1.19669 1.21288 1.20892 1.23108 0.92207 1.01415 1.06964 1.22815 0.95337 1.02448 1.03925 1.21549 0.94347 0.93072 0.92726 0.94947 1.21744 0.95127 1.01387 0.97523 1.21565 0.98375 0.96257 0.99330 1.21448 0.96724 0.96532 1.00173 1.21408 0.94389 0.99416 0.98646 1.20681 0.92071 0.95472 0.97708 0.92266 1.22433 0.94547 1.01182 0.96372 1.22936 1.00029 0.97336 1.00974 1.23103 1.04031 0.91940 1.04068 0.96663 0.89311 0.92946 0.90416 0.92806 0.93112 0.89512 0.92074 0.91936 0.91306 0.91262 0.93013 0.89604 0.93449 0.92788 0.93354 0.93526 0.90110 0.87307 0.89120 0.89290 0.89590 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 6.45 60.06 0.39 0.86 16 2 N -0.52 -9.72 2.49 -234.89 -0.59 -10.31 16 3 C 0.07 1.62 3.62 -3.82 -0.01 1.61 16 4 C 0.06 1.41 1.98 -155.66 -0.31 1.10 16 5 C -0.50 -13.32 8.97 -34.44 -0.31 -13.63 16 6 H 0.06 1.63 7.92 -52.49 -0.42 1.21 16 7 C 0.08 1.99 4.90 -17.82 -0.09 1.90 16 8 N -0.86 -22.96 11.27 55.43 0.62 -22.34 16 9 Si 0.88 20.54 29.60 -169.99 -5.03 15.51 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 13 C -0.20 -4.50 7.88 -26.73 -0.21 -4.71 16 14 C -0.21 -4.57 9.94 -26.73 -0.27 -4.84 16 15 C 0.09 1.51 1.97 -67.71 -0.13 1.38 16 16 H 0.03 0.58 6.64 -51.93 -0.34 0.24 16 17 C -0.12 -1.88 4.86 -26.73 -0.13 -2.01 16 18 C -0.12 -1.76 5.34 -26.73 -0.14 -1.91 16 19 C -0.11 -1.47 5.92 -26.73 -0.16 -1.63 16 20 C -0.10 -1.39 5.01 -26.73 -0.13 -1.53 16 21 C -0.04 -0.57 2.19 -90.62 -0.20 -0.77 16 22 H 0.06 0.80 7.88 -51.93 -0.41 0.39 16 23 C -0.13 -1.73 3.19 -90.62 -0.29 -2.02 16 24 C -0.18 -2.36 7.62 -26.73 -0.20 -2.56 16 25 C -0.19 -2.31 10.18 -26.73 -0.27 -2.58 16 26 H 0.01 0.31 7.03 -51.93 -0.36 -0.06 16 27 H 0.09 2.03 5.40 -51.93 -0.28 1.74 16 28 H 0.05 0.91 4.35 -51.93 -0.23 0.68 16 29 H 0.08 1.97 5.31 -51.93 -0.28 1.70 16 30 H 0.05 1.16 4.34 -51.93 -0.23 0.93 16 31 H 0.26 6.66 8.32 -40.82 -0.34 6.32 16 32 H 0.09 1.86 5.41 -51.93 -0.28 1.58 16 33 H 0.06 1.45 8.14 -51.92 -0.42 1.03 16 34 H 0.06 1.38 8.14 -51.92 -0.42 0.96 16 35 H 0.07 1.41 6.72 -51.93 -0.35 1.07 16 36 H 0.07 1.19 6.16 -51.93 -0.32 0.88 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 1.49 4.98 -51.93 -0.26 1.23 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.08 1.28 7.60 -51.93 -0.39 0.88 16 44 H 0.11 1.58 6.63 -51.93 -0.34 1.23 16 45 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 46 H 0.09 1.25 7.38 -51.93 -0.38 0.87 16 47 H 0.09 0.97 8.04 -51.93 -0.42 0.55 16 48 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 338.09 15.07 5.09 5.09 Total: -1.00 -25.41 338.09 -10.60 -36.01 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -8.23 Total: 7.36 kcal Atomic # 6 Polarization: -28.86 SS G_CDS: -2.47 Total: -31.33 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 0.04 Total: -32.65 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.51 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -25.41 -10.60 -36.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829188749.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.440 kcal (2) G-P(sol) polarization free energy of solvation -25.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds