Wall clock time and date at job start Mon Mar 30 2020 07:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46902 * 111.00187 * 2 1 4 4 C 1.53003 * 109.46943 * 290.65074 * 3 2 1 5 5 C 1.50696 * 115.55060 * 147.56601 * 4 3 2 6 6 H 1.08000 * 120.00138 * 145.52884 * 5 4 3 7 7 C 1.37882 * 120.00040 * 325.51666 * 5 4 3 8 8 N 1.31516 * 119.99750 * 336.75741 * 7 5 4 9 9 Si 1.86796 * 119.99851 * 156.75090 * 7 5 4 10 10 H 1.48496 * 109.47245 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46927 * 120.00528 * 9 7 5 12 12 H 1.48502 * 109.47017 * 240.00586 * 9 7 5 13 13 C 1.52997 * 117.49790 * 1.84888 * 4 3 2 14 14 C 1.52997 * 60.00341 * 252.51661 * 13 4 3 15 15 C 1.46901 * 111.00393 * 123.95364 * 2 1 3 16 16 H 1.09004 * 109.47037 * 317.09995 * 15 2 1 17 17 C 1.52997 * 109.47341 * 197.10624 * 15 2 1 18 18 C 1.52996 * 109.47151 * 299.99770 * 17 15 2 19 19 C 1.53002 * 109.47383 * 300.00049 * 18 17 15 20 20 C 1.53003 * 109.46783 * 59.99434 * 19 18 17 21 21 C 1.52996 * 109.47624 * 300.00419 * 20 19 18 22 22 H 1.09002 * 109.47008 * 300.00228 * 21 20 19 23 23 C 1.52997 * 109.47151 * 179.97438 * 21 20 19 24 24 C 1.53004 * 117.49670 * 183.61605 * 23 21 20 25 25 C 1.52998 * 59.99912 * 252.50971 * 24 23 21 26 26 H 1.09001 * 109.46897 * 280.99780 * 1 2 3 27 27 H 1.08994 * 109.47372 * 40.99112 * 1 2 3 28 28 H 1.08996 * 109.47093 * 160.99755 * 1 2 3 29 29 H 1.08996 * 109.47305 * 50.64304 * 3 2 1 30 30 H 1.09000 * 109.47227 * 170.64858 * 3 2 1 31 31 H 0.96998 * 119.99523 * 185.01243 * 8 7 5 32 32 H 1.09002 * 117.50386 * 0.02562 * 13 4 3 33 33 H 1.09008 * 117.49556 * 145.02476 * 13 4 3 34 34 H 1.09007 * 117.49763 * 252.51329 * 14 13 4 35 35 H 1.08993 * 117.50401 * 107.49104 * 14 13 4 36 36 H 1.09001 * 109.47331 * 59.99610 * 17 15 2 37 37 H 1.09002 * 109.47353 * 179.97438 * 17 15 2 38 38 H 1.09004 * 109.47314 * 60.00204 * 18 17 15 39 39 H 1.09000 * 109.47651 * 180.02562 * 18 17 15 40 40 H 1.08996 * 109.47454 * 179.97438 * 19 18 17 41 41 H 1.09004 * 109.47022 * 300.00333 * 19 18 17 42 42 H 1.09005 * 109.46671 * 179.97438 * 20 19 18 43 43 H 1.09004 * 109.46607 * 60.00645 * 20 19 18 44 44 H 1.09001 * 115.56380 * 329.29856 * 23 21 20 45 45 H 1.08998 * 117.49756 * 145.02503 * 24 23 21 46 46 H 1.09000 * 117.49976 * 0.02562 * 24 23 21 47 47 H 1.08999 * 117.50283 * 107.48775 * 25 24 23 48 48 H 1.09006 * 117.49882 * 252.48870 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7033 2.0299 -1.3499 5 6 1.4558 3.5158 -1.3082 6 1 1.7819 4.1407 -2.1265 7 6 0.8129 4.0776 -0.2255 8 7 0.0270 3.3398 0.5280 9 14 1.0584 5.8863 0.1711 10 1 1.9829 6.4898 -0.8220 11 1 -0.2501 6.5867 0.1181 12 1 1.6370 6.0206 1.5321 13 6 0.9229 1.2118 -2.3807 14 6 2.4183 1.4669 -2.5798 15 6 1.9955 -0.7660 1.1376 16 1 1.4229 -0.5258 2.0335 17 6 3.4653 -0.4040 1.3596 18 6 4.2691 -0.7409 0.1022 19 6 4.1514 -2.2377 -0.1926 20 6 2.6815 -2.5996 -0.4145 21 6 1.8777 -2.2627 0.8429 22 1 2.2684 -2.8310 1.6870 23 6 0.4077 -2.6241 0.6206 24 6 -0.5804 -2.2828 1.7379 25 6 -0.1842 -3.7388 1.4854 26 1 -0.3633 0.1961 1.0088 27 1 -0.3634 0.7756 -0.6740 28 1 -0.3633 -0.9716 -0.3346 29 1 1.5173 1.9442 0.7946 30 1 3.0723 1.3472 0.1670 31 1 -0.4818 3.7496 1.2449 32 1 0.6173 0.2046 -2.0972 33 1 0.2301 1.7484 -3.0290 34 1 2.7093 2.1713 -3.3592 35 1 3.0968 0.6276 -2.4274 36 1 3.5493 0.6623 1.5695 37 1 3.8559 -0.9720 2.2040 38 1 3.8785 -0.1726 -0.7420 39 1 5.3164 -0.4835 0.2605 40 1 4.7237 -2.4777 -1.0886 41 1 4.5420 -2.8060 0.6516 42 1 2.5977 -3.6659 -0.6249 43 1 2.2909 -2.0313 -1.2587 44 1 0.0534 -2.5422 -0.4069 45 1 -1.5847 -1.9765 1.4453 46 1 -0.1832 -1.8004 2.6310 47 1 0.4736 -4.2149 2.2125 48 1 -0.9281 -4.3906 1.0270 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829188749.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:58 Heat of formation + Delta-G solvation = 54.680420 kcal Electronic energy + Delta-G solvation = -24141.931301 eV Core-core repulsion = 21198.350270 eV Total energy + Delta-G solvation = -2943.581032 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.19984 -38.59488 -37.18181 -35.10984 -34.17032 -31.66772 -30.36616 -28.40082 -27.25538 -25.12012 -23.85009 -23.42480 -22.69567 -22.27063 -21.05176 -20.55421 -19.52691 -18.12803 -17.12160 -16.63899 -16.25590 -15.93897 -15.75607 -15.44173 -14.86074 -14.73669 -14.36667 -14.00999 -13.80175 -13.37140 -13.16148 -13.14105 -13.06642 -12.80591 -12.66077 -12.43748 -12.35097 -12.25087 -12.11568 -11.81381 -11.75484 -11.63575 -11.33706 -11.20886 -11.07088 -11.01225 -10.73655 -10.60383 -10.48127 -10.22411 -9.72127 -8.73974 -8.07004 -6.06955 1.36313 1.42584 1.52602 2.42186 2.97864 3.02210 3.39360 3.78523 3.82288 3.98911 4.02440 4.19096 4.22909 4.26439 4.49127 4.53368 4.60071 4.64905 4.71435 4.73796 4.82949 4.83725 4.85580 4.87250 4.94654 4.97890 5.03209 5.09762 5.10722 5.13854 5.21505 5.28699 5.32826 5.38725 5.41576 5.46473 5.52053 5.55096 5.58059 5.63862 5.65446 5.67698 5.81590 5.86638 6.05916 6.40270 6.61087 6.75834 6.94647 7.46599 8.89556 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.019707 B = 0.006415 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.497850 B = 4363.567378 C = 4840.681917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.508 5.508 3 C 0.089 3.911 4 C 0.034 3.966 5 C -0.524 4.524 6 H 0.043 0.957 7 C 0.039 3.961 8 N -0.877 5.877 9 Si 0.936 3.064 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.279 1.279 13 C -0.190 4.190 14 C -0.190 4.190 15 C 0.090 3.910 16 H 0.015 0.985 17 C -0.119 4.119 18 C -0.115 4.115 19 C -0.106 4.106 20 C -0.097 4.097 21 C -0.032 4.032 22 H 0.075 0.925 23 C -0.140 4.140 24 C -0.188 4.188 25 C -0.167 4.167 26 H -0.001 1.001 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.259 0.741 32 H 0.098 0.902 33 H 0.044 0.956 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.100 0.900 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.099 0.901 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.992 -14.162 3.039 15.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.232 5.232 3 C -0.038 4.038 4 C 0.033 3.967 5 C -0.561 4.561 6 H 0.061 0.939 7 C -0.163 4.163 8 N -0.513 5.513 9 Si 0.762 3.238 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.205 1.205 13 C -0.228 4.228 14 C -0.227 4.227 15 C -0.018 4.018 16 H 0.033 0.967 17 C -0.156 4.156 18 C -0.153 4.153 19 C -0.144 4.144 20 C -0.135 4.135 21 C -0.051 4.051 22 H 0.093 0.907 23 C -0.158 4.158 24 C -0.225 4.225 25 C -0.204 4.204 26 H 0.017 0.983 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.116 0.884 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.118 0.882 45 H 0.104 0.896 46 H 0.097 0.903 47 H 0.117 0.883 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.082 -14.389 2.825 15.221 hybrid contribution -0.644 2.059 0.897 2.337 sum 3.438 -12.329 3.722 13.330 Atomic orbital electron populations 1.22646 0.88250 1.01233 0.98641 1.62064 1.07114 1.13198 1.40819 1.21637 0.97390 0.87369 0.97435 1.19015 0.98459 0.91647 0.87582 1.20804 1.38919 0.92135 1.04242 0.93854 1.25473 0.93984 1.00895 0.95967 1.70131 1.23992 1.36604 1.20549 0.85870 0.77888 0.81920 0.78094 1.19744 1.21017 1.20479 1.22986 0.92388 1.01423 1.06021 1.22791 0.95085 1.02427 1.02397 1.21666 0.94560 0.94603 0.91022 0.96681 1.21723 0.94731 1.00248 0.98917 1.21512 0.98620 0.97495 0.97641 1.21425 0.96496 0.95013 1.01426 1.21365 0.94543 1.00232 0.97341 1.20620 0.92653 0.93228 0.98591 0.90698 1.22374 0.94281 1.03131 0.96003 1.22893 0.99753 0.99272 1.00618 1.23150 1.03502 0.90930 1.02847 0.98262 0.92744 0.90523 0.93896 0.92397 0.93179 0.88367 0.93780 0.92269 0.89504 0.93666 0.90773 0.92298 0.92301 0.91732 0.91539 0.91575 0.92366 0.88189 0.89590 0.90270 0.88262 0.88138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.59 6.45 127.69 0.82 2.42 16 2 N -0.51 -19.10 2.49 -897.07 -2.24 -21.34 16 3 C 0.09 4.04 3.62 86.30 0.31 4.35 16 4 C 0.03 1.66 1.98 -52.93 -0.10 1.56 16 5 C -0.52 -28.98 8.97 25.60 0.23 -28.75 16 6 H 0.04 2.46 7.92 -2.91 -0.02 2.44 16 7 C 0.04 2.11 4.90 84.66 0.42 2.53 16 8 N -0.88 -48.02 11.27 21.45 0.24 -47.78 16 9 Si 0.94 43.03 29.60 68.60 2.03 45.06 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 13 C -0.19 -8.75 7.88 30.59 0.24 -8.51 16 14 C -0.19 -8.34 9.94 30.59 0.30 -8.04 16 15 C 0.09 2.90 1.97 44.91 0.09 2.99 16 16 H 0.02 0.55 6.64 -2.38 -0.02 0.53 16 17 C -0.12 -3.57 4.86 30.59 0.15 -3.42 16 18 C -0.12 -3.23 5.34 30.59 0.16 -3.06 16 19 C -0.11 -2.45 5.92 30.60 0.18 -2.27 16 20 C -0.10 -2.39 5.01 30.59 0.15 -2.24 16 21 C -0.03 -0.82 2.19 -10.80 -0.02 -0.85 16 22 H 0.07 1.74 7.88 -2.39 -0.02 1.72 16 23 C -0.14 -3.52 3.19 -10.79 -0.03 -3.55 16 24 C -0.19 -4.82 7.62 30.59 0.23 -4.59 16 25 C -0.17 -3.45 10.18 30.59 0.31 -3.14 16 26 H 0.00 -0.05 7.03 -2.39 -0.02 -0.07 16 27 H 0.05 2.55 5.40 -2.39 -0.01 2.54 16 28 H 0.08 2.65 4.35 -2.39 -0.01 2.64 16 29 H 0.04 2.26 5.31 -2.39 -0.01 2.25 16 30 H 0.06 2.54 4.34 -2.39 -0.01 2.53 16 31 H 0.26 13.63 8.32 -92.71 -0.77 12.86 16 32 H 0.10 4.24 5.41 -2.39 -0.01 4.22 16 33 H 0.04 2.14 8.14 -2.38 -0.02 2.12 16 34 H 0.06 2.62 8.14 -2.38 -0.02 2.60 16 35 H 0.09 3.49 6.72 -2.39 -0.02 3.47 16 36 H 0.04 1.56 6.16 -2.39 -0.01 1.55 16 37 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.06 1.98 4.98 -2.38 -0.01 1.97 16 39 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 42 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 43 H 0.06 1.72 7.60 -2.38 -0.02 1.70 16 44 H 0.10 2.72 6.63 -2.39 -0.02 2.70 16 45 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 46 H 0.08 2.18 7.38 -2.39 -0.02 2.16 16 47 H 0.10 1.83 8.04 -2.39 -0.02 1.81 16 48 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 Total: -1.00 -55.63 338.09 4.41 -51.23 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: 0.93 Total: 27.40 kcal Atomic # 6 Polarization: -58.02 SS G_CDS: 3.44 Total: -54.57 kcal Atomic # 7 Polarization: -67.12 SS G_CDS: -1.99 Total: -69.11 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -55.63 4.41 -51.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829188749.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.907 kcal (2) G-P(sol) polarization free energy of solvation -55.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds