Wall clock time and date at job start Mon Mar 30 2020 07:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46893 * 111.00107 * 2 1 4 4 C 1.52999 * 109.47366 * 167.25409 * 3 2 1 5 5 C 1.50708 * 115.54779 * 305.63157 * 4 3 2 6 6 H 1.08000 * 119.99928 * 144.27858 * 5 4 3 7 7 C 1.37877 * 119.99983 * 324.27263 * 5 4 3 8 8 N 1.31513 * 120.00066 * 2.92851 * 7 5 4 9 9 Si 1.86797 * 120.00134 * 182.92466 * 7 5 4 10 10 H 1.48510 * 109.46964 * 4.93602 * 9 7 5 11 11 H 1.48495 * 109.47181 * 124.93574 * 9 7 5 12 12 H 1.48497 * 109.47396 * 244.94002 * 9 7 5 13 13 C 1.52996 * 117.50405 * 159.95618 * 4 3 2 14 14 C 1.52995 * 117.50020 * 91.29488 * 4 3 2 15 15 C 1.46896 * 111.00032 * 236.04568 * 2 1 3 16 16 H 1.08995 * 109.47197 * 171.04671 * 15 2 1 17 17 C 1.52998 * 109.47234 * 51.04959 * 15 2 1 18 18 C 1.52998 * 109.47225 * 180.02562 * 17 15 2 19 19 C 1.53001 * 109.47316 * 60.00182 * 18 17 15 20 20 C 1.52998 * 109.46825 * 300.00063 * 19 18 17 21 21 C 1.52998 * 109.47225 * 59.99881 * 20 19 18 22 22 H 1.08995 * 109.47191 * 60.00297 * 21 20 19 23 23 C 1.52998 * 109.47225 * 179.97438 * 21 20 19 24 24 C 1.52997 * 117.50216 * 255.27553 * 23 21 20 25 25 C 1.52999 * 117.50258 * 186.61561 * 23 21 20 26 26 H 1.08998 * 109.47315 * 179.33876 * 1 2 3 27 27 H 1.09003 * 109.47344 * 299.34434 * 1 2 3 28 28 H 1.09003 * 109.46817 * 59.33891 * 1 2 3 29 29 H 1.09000 * 109.47438 * 287.25679 * 3 2 1 30 30 H 1.09001 * 109.47093 * 47.25666 * 3 2 1 31 31 H 0.96999 * 120.00459 * 185.00426 * 8 7 5 32 32 H 1.09000 * 117.49931 * 0.02562 * 13 4 3 33 33 H 1.09007 * 117.50051 * 145.01914 * 13 4 3 34 34 H 1.09000 * 117.50439 * 214.98321 * 14 4 3 35 35 H 1.09007 * 117.49708 * 0.02562 * 14 4 3 36 36 H 1.08999 * 109.47132 * 59.99686 * 17 15 2 37 37 H 1.09005 * 109.46904 * 299.99850 * 17 15 2 38 38 H 1.08995 * 109.47191 * 299.99703 * 18 17 15 39 39 H 1.09003 * 109.47259 * 179.97438 * 18 17 15 40 40 H 1.09006 * 109.46906 * 59.99682 * 19 18 17 41 41 H 1.08999 * 109.47418 * 179.97438 * 19 18 17 42 42 H 1.08999 * 109.47132 * 180.02562 * 20 19 18 43 43 H 1.09005 * 109.46904 * 300.00045 * 20 19 18 44 44 H 1.09006 * 115.54949 * 40.94317 * 23 21 20 45 45 H 1.09001 * 117.49608 * 359.97438 * 24 23 21 46 46 H 1.09003 * 117.50287 * 145.01637 * 24 23 21 47 47 H 1.08998 * 117.49838 * 214.98344 * 25 23 21 48 48 H 1.08999 * 117.49712 * 359.97411 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.4917 1.3433 0.3182 5 6 3.8725 0.6293 1.5896 6 1 4.7906 0.0624 1.6364 7 6 3.0489 0.6997 2.6931 8 7 1.9035 1.3418 2.6188 9 14 3.5597 -0.1168 4.2936 10 1 4.9324 -0.6659 4.1531 11 1 3.5372 0.8850 5.3896 12 1 2.6160 -1.2186 4.6105 13 6 4.3223 2.5642 -0.0822 14 6 4.4631 1.2537 -0.8604 15 6 1.9955 -0.7660 -1.1375 16 1 3.0733 -0.6196 -1.2065 17 6 1.3317 -0.2829 -2.4286 18 6 1.8795 -1.0811 -3.6133 19 6 1.5780 -2.5673 -3.4101 20 6 2.2418 -3.0504 -2.1190 21 6 1.6940 -2.2521 -0.9343 22 1 0.6161 -2.3981 -0.8652 23 6 2.3573 -2.7356 0.3568 24 6 1.5262 -3.6175 1.2908 25 6 1.8314 -2.1681 1.6768 26 1 -0.3634 -1.0276 -0.0119 27 1 -0.3634 0.5036 0.8958 28 1 -0.3633 0.5241 -0.8840 29 1 1.8411 1.8199 -0.9814 30 1 1.4745 1.9605 0.7547 31 1 1.3579 1.4539 3.4129 32 1 3.8026 3.3877 -0.5720 33 1 5.1443 2.8509 0.5737 34 1 5.3778 0.6786 -0.7162 35 1 4.0362 1.2151 -1.8626 36 1 1.5460 0.7760 -2.5732 37 1 0.2537 -0.4293 -2.3597 38 1 2.9574 -0.9352 -3.6825 39 1 1.4063 -0.7373 -4.5331 40 1 0.5000 -2.7132 -3.3410 41 1 1.9679 -3.1359 -4.2543 42 1 2.0275 -4.1092 -1.9744 43 1 3.3198 -2.9044 -2.1881 44 1 3.4254 -2.9423 0.2878 45 1 0.5066 -3.8529 0.9856 46 1 2.0474 -4.4041 1.8365 47 1 2.5534 -2.0016 2.4762 48 1 1.0131 -1.4499 1.6253 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829188750.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:01 Heat of formation + Delta-G solvation = 52.669644 kcal Electronic energy + Delta-G solvation = -24544.572069 eV Core-core repulsion = 21600.903843 eV Total energy + Delta-G solvation = -2943.668225 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.48876 -36.70247 -35.59278 -34.22343 -31.94377 -30.08767 -28.77481 -26.56646 -25.19387 -23.65031 -22.78289 -21.26585 -21.13178 -20.65192 -19.71024 -18.86243 -18.48539 -16.14841 -15.34046 -14.75917 -14.43203 -14.29087 -14.00690 -13.74913 -13.59755 -13.29278 -13.09670 -12.65660 -12.42280 -12.09185 -11.83258 -11.31223 -11.19992 -11.07572 -10.97460 -10.94279 -10.60573 -10.58187 -10.42038 -10.36630 -10.30462 -10.18664 -9.87036 -9.78467 -9.67118 -9.35562 -9.12179 -8.87033 -8.64928 -8.49169 -7.96865 -6.80622 -5.74998 -3.82253 3.35436 3.45016 3.47993 4.52279 4.72361 4.86681 5.04367 5.16217 5.21378 5.44560 5.51257 5.63997 5.72662 5.75635 5.83279 5.88939 5.93241 6.02859 6.04536 6.09389 6.18011 6.20401 6.22002 6.28687 6.33458 6.34159 6.42988 6.48880 6.53110 6.56255 6.64145 6.68710 6.74297 6.76809 6.82754 6.86010 6.99309 7.02411 7.14285 7.17931 7.34783 7.43193 7.49198 7.74996 8.15013 8.40547 8.45016 8.70241 9.11645 9.77347 11.21519 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.016577 B = 0.008959 C = 0.007112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.648644 B = 3124.640364 C = 3936.331130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.476 5.476 3 C 0.105 3.895 4 C 0.073 3.927 5 C -0.460 4.460 6 H 0.049 0.951 7 C 0.095 3.905 8 N -0.870 5.870 9 Si 0.873 3.127 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.279 1.279 13 C -0.214 4.214 14 C -0.219 4.219 15 C 0.090 3.910 16 H 0.092 0.908 17 C -0.154 4.154 18 C -0.113 4.113 19 C -0.116 4.116 20 C -0.111 4.111 21 C -0.041 4.041 22 H 0.059 0.941 23 C -0.127 4.127 24 C -0.220 4.220 25 C -0.117 4.117 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.005 0.995 29 H -0.020 1.020 30 H 0.118 0.882 31 H 0.252 0.748 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.088 0.912 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.081 0.919 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.182 -5.695 -7.977 10.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.196 5.196 3 C -0.022 4.022 4 C 0.072 3.928 5 C -0.497 4.497 6 H 0.068 0.932 7 C -0.107 4.107 8 N -0.508 5.508 9 Si 0.702 3.298 10 H -0.202 1.202 11 H -0.218 1.218 12 H -0.206 1.206 13 C -0.252 4.252 14 C -0.256 4.256 15 C -0.019 4.019 16 H 0.110 0.890 17 C -0.193 4.193 18 C -0.151 4.151 19 C -0.154 4.154 20 C -0.149 4.149 21 C -0.060 4.060 22 H 0.077 0.923 23 C -0.145 4.145 24 C -0.257 4.257 25 C -0.154 4.154 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.023 0.977 29 H -0.003 1.003 30 H 0.135 0.865 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.106 0.894 45 H 0.096 0.904 46 H 0.093 0.907 47 H 0.099 0.901 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.230 -5.928 -7.405 10.021 hybrid contribution 0.168 0.013 0.001 0.169 sum -3.062 -5.915 -7.405 9.960 Atomic orbital electron populations 1.22346 0.90565 0.99674 0.99545 1.61944 1.04230 1.14777 1.38633 1.21850 0.95904 0.88278 0.96145 1.18970 0.88379 0.93700 0.91749 1.20246 1.05054 1.29977 0.94458 0.93228 1.24612 0.93894 0.94586 0.97625 1.69806 1.11336 1.42411 1.27271 0.86936 0.78658 0.79547 0.84657 1.20248 1.21802 1.20560 1.23003 1.05785 0.91549 1.04903 1.22923 1.03896 1.02325 0.96464 1.21769 1.00680 0.92308 0.87174 0.89024 1.22283 1.00500 0.99629 0.96909 1.21454 1.00895 0.95107 0.97660 1.21516 1.00305 0.96029 0.97512 1.21546 1.00223 0.98962 0.94142 1.20660 0.98522 0.94431 0.92357 0.92266 1.21832 0.97315 1.03498 0.91848 1.23086 0.99924 0.96126 1.06585 1.22933 1.03743 0.92103 0.96586 0.93319 0.91432 0.97662 1.00264 0.86477 0.93690 0.92211 0.90705 0.91155 0.92008 0.92417 0.92431 0.92225 0.93123 0.92588 0.92780 0.92496 0.92118 0.89387 0.90420 0.90693 0.90093 0.86412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 7.29 60.07 0.44 0.93 16 2 N -0.48 -9.43 1.89 -234.89 -0.44 -9.87 16 3 C 0.11 2.34 3.81 -3.83 -0.01 2.32 16 4 C 0.07 1.70 1.59 -155.66 -0.25 1.45 16 5 C -0.46 -11.78 8.74 -34.44 -0.30 -12.08 16 6 H 0.05 1.33 7.81 -52.49 -0.41 0.92 16 7 C 0.10 2.41 4.52 -17.82 -0.08 2.33 16 8 N -0.87 -22.11 10.21 55.43 0.57 -21.55 16 9 Si 0.87 20.57 27.47 -169.99 -4.67 15.90 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.54 7.00 56.52 0.40 -6.14 16 13 C -0.21 -4.78 9.96 -26.70 -0.27 -5.04 16 14 C -0.22 -4.68 8.19 -26.70 -0.22 -4.90 16 15 C 0.09 1.60 1.49 -67.72 -0.10 1.50 16 16 H 0.09 1.85 5.42 -51.93 -0.28 1.57 16 17 C -0.15 -2.45 4.41 -26.73 -0.12 -2.57 16 18 C -0.11 -1.54 5.92 -26.73 -0.16 -1.70 16 19 C -0.12 -1.47 5.92 -26.73 -0.16 -1.63 16 20 C -0.11 -1.55 5.20 -26.73 -0.14 -1.69 16 21 C -0.04 -0.67 1.74 -90.62 -0.16 -0.82 16 22 H 0.06 0.98 6.37 -51.93 -0.33 0.65 16 23 C -0.13 -2.27 5.05 -90.62 -0.46 -2.73 16 24 C -0.22 -3.72 10.18 -26.70 -0.27 -3.99 16 25 C -0.12 -2.34 8.62 -26.70 -0.23 -2.57 16 26 H 0.05 0.83 6.15 -51.93 -0.32 0.51 16 27 H 0.07 1.32 8.12 -51.93 -0.42 0.89 16 28 H 0.01 0.09 6.49 -51.93 -0.34 -0.25 16 29 H -0.02 -0.45 6.43 -51.93 -0.33 -0.78 16 30 H 0.12 2.90 5.79 -51.93 -0.30 2.60 16 31 H 0.25 6.32 8.32 -40.82 -0.34 5.98 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16 34 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.06 1.25 7.93 -51.93 -0.41 0.83 16 36 H 0.06 0.99 6.66 -51.93 -0.35 0.65 16 37 H 0.06 0.90 6.42 -51.93 -0.33 0.57 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 45 H 0.08 1.22 8.09 -51.93 -0.42 0.80 16 46 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 47 H 0.08 1.80 5.42 -51.93 -0.28 1.52 16 48 H 0.12 2.52 5.26 -51.93 -0.27 2.24 16 LS Contribution 343.67 15.07 5.18 5.18 Total: -1.00 -24.27 343.67 -10.44 -34.72 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -8.59 Total: 6.82 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: -2.48 Total: -31.19 kcal Atomic # 7 Polarization: -31.54 SS G_CDS: 0.12 Total: -31.42 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -24.27 -10.44 -34.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829188750.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.385 kcal (2) G-P(sol) polarization free energy of solvation -24.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds