Wall clock time and date at job start Mon Mar 30 2020 07:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46893 * 111.00107 * 2 1 4 4 C 1.52999 * 109.47366 * 167.25409 * 3 2 1 5 5 C 1.50708 * 115.54779 * 305.63157 * 4 3 2 6 6 H 1.08000 * 119.99928 * 144.27858 * 5 4 3 7 7 C 1.37877 * 119.99983 * 324.27263 * 5 4 3 8 8 N 1.31513 * 120.00066 * 2.92851 * 7 5 4 9 9 Si 1.86797 * 120.00134 * 182.92466 * 7 5 4 10 10 H 1.48510 * 109.46964 * 4.93602 * 9 7 5 11 11 H 1.48495 * 109.47181 * 124.93574 * 9 7 5 12 12 H 1.48497 * 109.47396 * 244.94002 * 9 7 5 13 13 C 1.52996 * 117.50405 * 159.95618 * 4 3 2 14 14 C 1.52995 * 117.50020 * 91.29488 * 4 3 2 15 15 C 1.46896 * 111.00032 * 236.04568 * 2 1 3 16 16 H 1.08995 * 109.47197 * 171.04671 * 15 2 1 17 17 C 1.52998 * 109.47234 * 51.04959 * 15 2 1 18 18 C 1.52998 * 109.47225 * 180.02562 * 17 15 2 19 19 C 1.53001 * 109.47316 * 60.00182 * 18 17 15 20 20 C 1.52998 * 109.46825 * 300.00063 * 19 18 17 21 21 C 1.52998 * 109.47225 * 59.99881 * 20 19 18 22 22 H 1.08995 * 109.47191 * 60.00297 * 21 20 19 23 23 C 1.52998 * 109.47225 * 179.97438 * 21 20 19 24 24 C 1.52997 * 117.50216 * 255.27553 * 23 21 20 25 25 C 1.52999 * 117.50258 * 186.61561 * 23 21 20 26 26 H 1.08998 * 109.47315 * 179.33876 * 1 2 3 27 27 H 1.09003 * 109.47344 * 299.34434 * 1 2 3 28 28 H 1.09003 * 109.46817 * 59.33891 * 1 2 3 29 29 H 1.09000 * 109.47438 * 287.25679 * 3 2 1 30 30 H 1.09001 * 109.47093 * 47.25666 * 3 2 1 31 31 H 0.96999 * 120.00459 * 185.00426 * 8 7 5 32 32 H 1.09000 * 117.49931 * 0.02562 * 13 4 3 33 33 H 1.09007 * 117.50051 * 145.01914 * 13 4 3 34 34 H 1.09000 * 117.50439 * 214.98321 * 14 4 3 35 35 H 1.09007 * 117.49708 * 0.02562 * 14 4 3 36 36 H 1.08999 * 109.47132 * 59.99686 * 17 15 2 37 37 H 1.09005 * 109.46904 * 299.99850 * 17 15 2 38 38 H 1.08995 * 109.47191 * 299.99703 * 18 17 15 39 39 H 1.09003 * 109.47259 * 179.97438 * 18 17 15 40 40 H 1.09006 * 109.46906 * 59.99682 * 19 18 17 41 41 H 1.08999 * 109.47418 * 179.97438 * 19 18 17 42 42 H 1.08999 * 109.47132 * 180.02562 * 20 19 18 43 43 H 1.09005 * 109.46904 * 300.00045 * 20 19 18 44 44 H 1.09006 * 115.54949 * 40.94317 * 23 21 20 45 45 H 1.09001 * 117.49608 * 359.97438 * 24 23 21 46 46 H 1.09003 * 117.50287 * 145.01637 * 24 23 21 47 47 H 1.08998 * 117.49838 * 214.98344 * 25 23 21 48 48 H 1.08999 * 117.49712 * 359.97411 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.4917 1.3433 0.3182 5 6 3.8725 0.6293 1.5896 6 1 4.7906 0.0624 1.6364 7 6 3.0489 0.6997 2.6931 8 7 1.9035 1.3418 2.6188 9 14 3.5597 -0.1168 4.2936 10 1 4.9324 -0.6659 4.1531 11 1 3.5372 0.8850 5.3896 12 1 2.6160 -1.2186 4.6105 13 6 4.3223 2.5642 -0.0822 14 6 4.4631 1.2537 -0.8604 15 6 1.9955 -0.7660 -1.1375 16 1 3.0733 -0.6196 -1.2065 17 6 1.3317 -0.2829 -2.4286 18 6 1.8795 -1.0811 -3.6133 19 6 1.5780 -2.5673 -3.4101 20 6 2.2418 -3.0504 -2.1190 21 6 1.6940 -2.2521 -0.9343 22 1 0.6161 -2.3981 -0.8652 23 6 2.3573 -2.7356 0.3568 24 6 1.5262 -3.6175 1.2908 25 6 1.8314 -2.1681 1.6768 26 1 -0.3634 -1.0276 -0.0119 27 1 -0.3634 0.5036 0.8958 28 1 -0.3633 0.5241 -0.8840 29 1 1.8411 1.8199 -0.9814 30 1 1.4745 1.9605 0.7547 31 1 1.3579 1.4539 3.4129 32 1 3.8026 3.3877 -0.5720 33 1 5.1443 2.8509 0.5737 34 1 5.3778 0.6786 -0.7162 35 1 4.0362 1.2151 -1.8626 36 1 1.5460 0.7760 -2.5732 37 1 0.2537 -0.4293 -2.3597 38 1 2.9574 -0.9352 -3.6825 39 1 1.4063 -0.7373 -4.5331 40 1 0.5000 -2.7132 -3.3410 41 1 1.9679 -3.1359 -4.2543 42 1 2.0275 -4.1092 -1.9744 43 1 3.3198 -2.9044 -2.1881 44 1 3.4254 -2.9423 0.2878 45 1 0.5066 -3.8529 0.9856 46 1 2.0474 -4.4041 1.8365 47 1 2.5534 -2.0016 2.4762 48 1 1.0131 -1.4499 1.6253 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829188750.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:00 Heat of formation + Delta-G solvation = 44.502375 kcal Electronic energy + Delta-G solvation = -24544.926228 eV Core-core repulsion = 21600.903843 eV Total energy + Delta-G solvation = -2944.022385 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.88686 -38.38177 -36.97694 -35.69639 -33.91447 -31.30800 -30.08891 -28.22614 -27.14226 -25.11549 -24.01519 -22.90043 -22.75086 -22.03821 -20.99277 -20.55833 -19.97728 -17.97211 -16.78231 -16.60454 -15.88671 -15.78832 -15.43530 -15.30514 -15.03336 -14.82186 -14.49563 -14.11823 -13.88387 -13.49131 -13.20375 -13.02450 -12.90878 -12.76859 -12.43322 -12.38435 -12.29582 -12.17445 -11.99459 -11.90873 -11.72043 -11.63717 -11.32786 -11.19713 -11.13387 -11.05625 -10.64578 -10.55700 -10.34183 -10.19375 -9.85693 -8.32885 -7.71659 -5.83855 1.42323 1.49498 1.53215 2.56107 3.21885 3.28755 3.56114 3.79975 3.86889 4.00465 4.21821 4.26846 4.35280 4.41205 4.45031 4.55418 4.58988 4.62213 4.68075 4.72247 4.79656 4.83693 4.87719 4.88653 4.91166 4.97671 4.99988 5.05209 5.05985 5.16885 5.21053 5.27305 5.29532 5.32144 5.38938 5.45491 5.49857 5.55099 5.57942 5.60586 5.67057 5.78779 5.82356 5.92447 6.23341 6.59846 6.83871 6.97315 7.14634 7.76530 9.21108 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.016577 B = 0.008959 C = 0.007112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.648644 B = 3124.640364 C = 3936.331130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.487 5.487 3 C 0.119 3.881 4 C 0.053 3.947 5 C -0.471 4.471 6 H 0.028 0.972 7 C 0.077 3.923 8 N -0.875 5.875 9 Si 0.908 3.092 10 H -0.285 1.285 11 H -0.293 1.293 12 H -0.277 1.277 13 C -0.217 4.217 14 C -0.197 4.197 15 C 0.093 3.907 16 H 0.066 0.934 17 C -0.147 4.147 18 C -0.110 4.110 19 C -0.110 4.110 20 C -0.107 4.107 21 C -0.034 4.034 22 H 0.063 0.937 23 C -0.126 4.126 24 C -0.193 4.193 25 C -0.141 4.141 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.015 0.985 29 H -0.019 1.019 30 H 0.090 0.910 31 H 0.250 0.750 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.041 0.959 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.076 0.924 45 H 0.096 0.904 46 H 0.085 0.915 47 H 0.052 0.948 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.051 -7.189 -9.774 12.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.207 5.207 3 C -0.009 4.009 4 C 0.052 3.948 5 C -0.508 4.508 6 H 0.046 0.954 7 C -0.125 4.125 8 N -0.513 5.513 9 Si 0.738 3.262 10 H -0.210 1.210 11 H -0.220 1.220 12 H -0.203 1.203 13 C -0.255 4.255 14 C -0.234 4.234 15 C -0.016 4.016 16 H 0.084 0.916 17 C -0.186 4.186 18 C -0.148 4.148 19 C -0.148 4.148 20 C -0.145 4.145 21 C -0.053 4.053 22 H 0.082 0.918 23 C -0.144 4.144 24 C -0.229 4.229 25 C -0.178 4.178 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.034 0.966 29 H -0.001 1.001 30 H 0.108 0.892 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.095 0.905 45 H 0.114 0.886 46 H 0.104 0.896 47 H 0.071 0.929 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.098 -7.425 -9.207 12.518 hybrid contribution 0.477 0.482 0.590 0.899 sum -3.621 -6.943 -8.617 11.643 Atomic orbital electron populations 1.22250 0.89612 1.00374 0.99046 1.61856 1.05114 1.13503 1.40255 1.21528 0.94772 0.89434 0.95133 1.19026 0.89546 0.94372 0.91854 1.20233 1.04399 1.30301 0.95878 0.95382 1.24866 0.93959 0.94837 0.98790 1.69918 1.11433 1.42688 1.27288 0.86395 0.77953 0.78938 0.82940 1.21025 1.22039 1.20326 1.23016 1.05384 0.92044 1.05076 1.22823 1.02927 1.01146 0.96482 1.21708 0.99222 0.93172 0.87538 0.91558 1.22180 1.00644 0.98981 0.96808 1.21443 1.00540 0.95648 0.97202 1.21488 1.00751 0.95224 0.97312 1.21517 0.99796 0.99391 0.93789 1.20625 0.98607 0.93489 0.92574 0.91836 1.21882 0.97142 1.03391 0.91997 1.23124 1.00740 0.94322 1.04760 1.22683 1.03339 0.94387 0.97368 0.91942 0.93343 0.96626 1.00094 0.89202 0.93938 0.91063 0.91500 0.91572 0.90505 0.94011 0.91869 0.92833 0.91352 0.91760 0.90641 0.91023 0.92861 0.90546 0.88560 0.89605 0.92940 0.87875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.27 7.29 127.69 0.93 2.20 16 2 N -0.49 -19.22 1.89 -897.07 -1.70 -20.92 16 3 C 0.12 5.32 3.81 86.30 0.33 5.65 16 4 C 0.05 2.49 1.59 -52.93 -0.08 2.41 16 5 C -0.47 -24.67 8.74 25.60 0.22 -24.44 16 6 H 0.03 1.55 7.81 -2.91 -0.02 1.53 16 7 C 0.08 3.98 4.52 84.65 0.38 4.36 16 8 N -0.88 -45.34 10.21 21.45 0.22 -45.12 16 9 Si 0.91 43.03 27.47 68.60 1.88 44.91 16 10 H -0.28 -13.71 7.11 99.48 0.71 -13.01 16 11 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 12 H -0.28 -12.94 7.00 99.48 0.70 -12.25 16 13 C -0.22 -9.67 9.96 30.62 0.30 -9.37 16 14 C -0.20 -8.35 8.19 30.61 0.25 -8.10 16 15 C 0.09 3.20 1.49 44.92 0.07 3.27 16 16 H 0.07 2.65 5.42 -2.39 -0.01 2.63 16 17 C -0.15 -4.37 4.41 30.59 0.13 -4.24 16 18 C -0.11 -2.67 5.92 30.59 0.18 -2.49 16 19 C -0.11 -2.36 5.92 30.59 0.18 -2.18 16 20 C -0.11 -2.68 5.20 30.59 0.16 -2.52 16 21 C -0.03 -1.05 1.74 -10.79 -0.02 -1.06 16 22 H 0.06 1.91 6.37 -2.39 -0.02 1.89 16 23 C -0.13 -4.38 5.05 -10.80 -0.05 -4.43 16 24 C -0.19 -6.10 10.18 30.62 0.31 -5.79 16 25 C -0.14 -5.62 8.62 30.62 0.26 -5.36 16 26 H 0.06 2.03 6.15 -2.39 -0.01 2.02 16 27 H 0.05 1.90 8.12 -2.39 -0.02 1.88 16 28 H 0.02 0.52 6.49 -2.39 -0.02 0.50 16 29 H -0.02 -0.81 6.43 -2.39 -0.02 -0.83 16 30 H 0.09 4.53 5.79 -2.39 -0.01 4.52 16 31 H 0.25 12.76 8.32 -92.71 -0.77 11.99 16 32 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 33 H 0.07 3.05 8.14 -2.38 -0.02 3.03 16 34 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 35 H 0.08 3.01 7.93 -2.38 -0.02 3.00 16 36 H 0.04 1.37 6.66 -2.39 -0.02 1.35 16 37 H 0.06 1.81 6.42 -2.38 -0.02 1.79 16 38 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 41 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 44 H 0.08 2.82 8.14 -2.38 -0.02 2.80 16 45 H 0.10 2.71 8.09 -2.39 -0.02 2.69 16 46 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 47 H 0.05 2.38 5.42 -2.39 -0.01 2.36 16 48 H 0.10 4.43 5.26 -2.39 -0.01 4.41 16 Total: -1.00 -52.29 343.67 4.87 -47.42 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: 0.90 Total: 25.80 kcal Atomic # 6 Polarization: -55.65 SS G_CDS: 3.56 Total: -52.09 kcal Atomic # 7 Polarization: -64.56 SS G_CDS: -1.48 Total: -66.04 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.88 Total: 44.91 kcal Total: -52.29 4.87 -47.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829188750.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.926 kcal (2) G-P(sol) polarization free energy of solvation -52.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds