Wall clock time and date at job start Mon Mar 30 2020 07:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38035 * 120.09879 * 2 1 4 4 C 1.38651 * 120.38510 * 180.02562 * 3 2 1 5 5 C 1.37887 * 119.89057 * 0.18508 * 4 3 2 6 6 C 1.38655 * 119.75232 * 359.69987 * 5 4 3 7 7 C 1.38280 * 120.35708 * 0.21414 * 6 5 4 8 8 F 1.35094 * 120.09410 * 180.02562 * 7 6 5 9 9 C 1.50629 * 121.84157 * 179.42675 * 5 4 3 10 10 H 1.09001 * 109.26878 * 257.46906 * 9 5 4 11 11 C 1.52996 * 109.27502 * 137.99150 * 9 5 4 12 12 C 1.50700 * 109.47098 * 175.00214 * 11 9 5 13 13 H 1.08000 * 119.99987 * 359.97438 * 12 11 9 14 14 C 1.37879 * 119.99886 * 179.97438 * 12 11 9 15 15 N 1.31516 * 120.00005 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00053 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47422 * 89.99551 * 16 14 12 18 18 H 1.48504 * 109.47000 * 210.00106 * 16 14 12 19 19 H 1.48502 * 109.47022 * 329.99529 * 16 14 12 20 20 N 1.46632 * 110.49603 * 17.72883 * 9 5 4 21 21 C 1.47153 * 110.27762 * 307.46766 * 20 9 5 22 22 C 1.50727 * 118.46485 * 180.40763 * 4 3 2 23 23 H 1.08994 * 109.46955 * 89.99984 * 1 2 3 24 24 H 1.08996 * 109.46616 * 210.00016 * 1 2 3 25 25 H 1.09006 * 109.47154 * 329.99697 * 1 2 3 26 26 H 1.08002 * 119.80835 * 359.76193 * 3 2 1 27 27 H 1.08004 * 119.82541 * 180.20043 * 6 5 4 28 28 H 1.09004 * 109.47029 * 295.00040 * 11 9 5 29 29 H 1.08998 * 109.47109 * 54.99957 * 11 9 5 30 30 H 0.96997 * 120.00099 * 180.02562 * 15 14 12 31 31 H 1.00899 * 111.00458 * 70.91129 * 20 9 5 32 32 H 1.09000 * 109.63200 * 311.52413 * 21 20 9 33 33 H 1.08995 * 109.63260 * 190.93650 * 21 20 9 34 34 H 1.08994 * 109.39252 * 317.10801 * 22 4 3 35 35 H 1.08997 * 109.39074 * 76.91018 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.1942 0.0000 4 6 3.5857 1.2012 -0.0005 5 6 4.2789 0.0092 -0.0049 6 6 3.5841 -1.1908 -0.0025 7 6 2.2013 -1.1977 -0.0001 8 9 1.5298 -2.3699 0.0028 9 6 5.7844 -0.0346 -0.0185 10 1 6.1284 -0.2698 -1.0257 11 6 6.2669 -1.1204 0.9454 12 6 7.7647 -1.2521 0.8447 13 1 8.3172 -0.6244 0.1612 14 6 8.4297 -2.1739 1.6252 15 7 9.7368 -2.2892 1.5370 16 14 7.4739 -3.2600 2.8068 17 1 7.0689 -4.5092 2.1136 18 1 8.3299 -3.5961 3.9728 19 1 6.2631 -2.5380 3.2735 20 7 6.3394 1.2589 0.3927 21 6 5.7554 2.3435 -0.4123 22 6 4.2975 2.5298 0.0089 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3632 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5139 26 1 1.6577 2.1287 -0.0039 27 1 4.1258 -2.1251 -0.0027 28 1 5.9938 -0.8485 1.9651 29 1 5.8002 -2.0705 0.6854 30 1 10.2046 -2.9380 2.0857 31 1 6.1909 1.4194 1.3777 32 1 5.8005 2.0802 -1.4691 33 1 6.3077 3.2669 -0.2382 34 1 3.8042 3.2096 -0.6856 35 1 4.2636 2.9513 1.0135 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962374879.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:21 Heat of formation + Delta-G solvation = -32.592591 kcal Electronic energy + Delta-G solvation = -18112.050595 eV Core-core repulsion = 15216.466960 eV Total energy + Delta-G solvation = -2895.583635 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.73586 -40.04472 -36.64312 -33.82407 -32.45562 -31.79732 -29.68912 -27.56769 -27.08074 -23.56027 -22.97888 -22.40529 -20.27403 -19.63586 -17.30666 -16.50587 -16.34686 -15.62159 -15.50829 -14.60472 -14.39572 -14.07678 -13.67038 -13.63027 -13.41470 -13.18300 -13.01158 -12.58729 -12.47761 -12.21414 -11.79920 -11.60096 -11.23894 -11.14787 -10.90937 -10.73034 -10.26762 -9.92346 -9.72023 -9.15448 -8.60809 -8.48705 -8.20403 -7.86172 -5.97181 -3.93220 1.27462 1.34924 3.32364 3.40743 3.43263 3.64628 4.38238 4.48958 4.63464 4.71970 4.83007 4.98352 5.13291 5.18860 5.30489 5.36085 5.47059 5.47986 5.59898 5.73663 5.74698 5.94032 6.05459 6.09408 6.13158 6.26498 6.28944 6.36928 6.43926 6.78260 6.98143 7.09259 7.23171 7.61470 7.81289 7.96889 8.62920 9.15569 9.64793 11.16297 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021743 B = 0.007575 C = 0.005885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.484874 B = 3695.383085 C = 4757.081631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.132 4.132 3 C -0.096 4.096 4 C -0.092 4.092 5 C -0.074 4.074 6 C -0.140 4.140 7 C 0.089 3.911 8 F -0.143 7.143 9 C 0.136 3.864 10 H 0.092 0.908 11 C -0.006 4.006 12 C -0.500 4.500 13 H 0.083 0.917 14 C 0.066 3.934 15 N -0.903 5.903 16 Si 0.870 3.130 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.268 1.268 20 N -0.652 5.652 21 C 0.052 3.948 22 C -0.116 4.116 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.125 0.875 27 H 0.142 0.858 28 H 0.017 0.983 29 H 0.020 0.980 30 H 0.261 0.739 31 H 0.341 0.659 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.556 8.032 -3.156 18.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.133 4.133 3 C -0.114 4.114 4 C -0.093 4.093 5 C -0.076 4.076 6 C -0.160 4.160 7 C 0.070 3.930 8 F -0.121 7.121 9 C 0.026 3.974 10 H 0.110 0.890 11 C -0.043 4.043 12 C -0.538 4.538 13 H 0.101 0.899 14 C -0.135 4.135 15 N -0.543 5.543 16 Si 0.697 3.303 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.192 1.192 20 N -0.280 5.280 21 C -0.078 4.078 22 C -0.155 4.155 23 H 0.088 0.912 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.143 0.857 27 H 0.160 0.840 28 H 0.035 0.965 29 H 0.038 0.962 30 H 0.071 0.929 31 H 0.160 0.840 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.818 7.834 -3.464 17.988 hybrid contribution -1.570 -0.914 1.104 2.126 sum -17.388 6.920 -2.360 18.863 Atomic orbital electron populations 1.20655 0.90576 1.02904 1.02376 1.19763 0.96579 0.92024 1.04898 1.20766 0.93344 0.96710 1.00571 1.19663 0.93245 0.95007 1.01367 1.20845 0.99299 0.91360 0.96111 1.21325 0.91778 1.00337 1.02514 1.17514 0.90162 0.80707 1.04637 1.91448 1.80532 1.46080 1.94088 1.20608 0.83855 0.91295 1.01654 0.88980 1.19770 0.98298 0.92365 0.93914 1.21033 0.89433 1.19815 1.23531 0.89882 1.24988 0.94677 0.97008 0.96790 1.69902 1.07232 1.36179 1.40941 0.86947 0.80415 0.81462 0.81447 1.20407 1.21411 1.19230 1.60899 1.58194 1.00504 1.08363 1.22130 0.90748 0.95962 0.98954 1.21238 0.98327 0.93677 1.02268 0.91212 0.91462 0.91336 0.85664 0.84040 0.96474 0.96217 0.92892 0.84027 0.90977 0.90400 0.90706 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 9.84 36.01 0.35 -0.78 16 2 C -0.13 -1.79 5.88 -104.62 -0.62 -2.41 16 3 C -0.10 -1.24 9.31 -39.50 -0.37 -1.61 16 4 C -0.09 -1.34 5.77 -104.58 -0.60 -1.94 16 5 C -0.07 -1.26 5.47 -104.63 -0.57 -1.83 16 6 C -0.14 -2.41 9.05 -39.41 -0.36 -2.77 16 7 C 0.09 1.41 7.24 -39.49 -0.29 1.12 16 8 F -0.14 -2.27 16.49 2.25 0.04 -2.23 16 9 C 0.14 2.63 2.47 -69.05 -0.17 2.46 16 10 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 11 C -0.01 -0.14 3.24 -27.89 -0.09 -0.23 16 12 C -0.50 -13.87 9.36 -34.44 -0.32 -14.19 16 13 H 0.08 2.52 7.99 -52.49 -0.42 2.10 16 14 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 15 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 16 Si 0.87 21.65 27.47 -169.99 -4.67 16.98 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 20 N -0.65 -11.72 6.32 -108.05 -0.68 -12.41 16 21 C 0.05 0.72 6.62 -3.74 -0.02 0.70 16 22 C -0.12 -1.41 5.82 -27.92 -0.16 -1.57 16 23 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.71 7.65 -51.93 -0.40 0.31 16 25 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 26 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 27 H 0.14 2.49 6.33 -52.48 -0.33 2.16 16 28 H 0.02 0.40 7.17 -51.93 -0.37 0.03 16 29 H 0.02 0.45 5.67 -51.93 -0.29 0.16 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.34 6.06 8.54 -39.29 -0.34 5.72 16 32 H 0.07 1.01 8.05 -51.93 -0.42 0.59 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 287.10 15.07 4.33 4.33 Total: -1.00 -30.37 287.10 -8.22 -38.59 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -4.69 Total: 2.99 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -3.32 Total: -21.24 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.09 Total: -39.41 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.37 -8.22 -38.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962374879.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.998 kcal (2) G-P(sol) polarization free energy of solvation -30.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds