Wall clock time and date at job start Mon Mar 30 2020 07:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38035 * 120.09879 * 2 1 4 4 C 1.38651 * 120.38510 * 180.02562 * 3 2 1 5 5 C 1.37887 * 119.89057 * 0.18508 * 4 3 2 6 6 C 1.38655 * 119.75232 * 359.69987 * 5 4 3 7 7 C 1.38280 * 120.35708 * 0.21414 * 6 5 4 8 8 F 1.35094 * 120.09410 * 180.02562 * 7 6 5 9 9 C 1.50629 * 121.84157 * 179.42675 * 5 4 3 10 10 H 1.09001 * 109.26878 * 257.46906 * 9 5 4 11 11 C 1.52996 * 109.27502 * 137.99150 * 9 5 4 12 12 C 1.50700 * 109.47098 * 175.00214 * 11 9 5 13 13 H 1.08000 * 119.99987 * 359.97438 * 12 11 9 14 14 C 1.37879 * 119.99886 * 179.97438 * 12 11 9 15 15 N 1.31516 * 120.00005 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00053 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47422 * 89.99551 * 16 14 12 18 18 H 1.48504 * 109.47000 * 210.00106 * 16 14 12 19 19 H 1.48502 * 109.47022 * 329.99529 * 16 14 12 20 20 N 1.46632 * 110.49603 * 17.72883 * 9 5 4 21 21 C 1.47153 * 110.27762 * 307.46766 * 20 9 5 22 22 C 1.50727 * 118.46485 * 180.40763 * 4 3 2 23 23 H 1.08994 * 109.46955 * 89.99984 * 1 2 3 24 24 H 1.08996 * 109.46616 * 210.00016 * 1 2 3 25 25 H 1.09006 * 109.47154 * 329.99697 * 1 2 3 26 26 H 1.08002 * 119.80835 * 359.76193 * 3 2 1 27 27 H 1.08004 * 119.82541 * 180.20043 * 6 5 4 28 28 H 1.09004 * 109.47029 * 295.00040 * 11 9 5 29 29 H 1.08998 * 109.47109 * 54.99957 * 11 9 5 30 30 H 0.96997 * 120.00099 * 180.02562 * 15 14 12 31 31 H 1.00899 * 111.00458 * 70.91129 * 20 9 5 32 32 H 1.09000 * 109.63200 * 311.52413 * 21 20 9 33 33 H 1.08995 * 109.63260 * 190.93650 * 21 20 9 34 34 H 1.08994 * 109.39252 * 317.10801 * 22 4 3 35 35 H 1.08997 * 109.39074 * 76.91018 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.1942 0.0000 4 6 3.5857 1.2012 -0.0005 5 6 4.2789 0.0092 -0.0049 6 6 3.5841 -1.1908 -0.0025 7 6 2.2013 -1.1977 -0.0001 8 9 1.5298 -2.3699 0.0028 9 6 5.7844 -0.0346 -0.0185 10 1 6.1284 -0.2698 -1.0257 11 6 6.2669 -1.1204 0.9454 12 6 7.7647 -1.2521 0.8447 13 1 8.3172 -0.6244 0.1612 14 6 8.4297 -2.1739 1.6252 15 7 9.7368 -2.2892 1.5370 16 14 7.4739 -3.2600 2.8068 17 1 7.0689 -4.5092 2.1136 18 1 8.3299 -3.5961 3.9728 19 1 6.2631 -2.5380 3.2735 20 7 6.3394 1.2589 0.3927 21 6 5.7554 2.3435 -0.4123 22 6 4.2975 2.5298 0.0089 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3632 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5139 26 1 1.6577 2.1287 -0.0039 27 1 4.1258 -2.1251 -0.0027 28 1 5.9938 -0.8485 1.9651 29 1 5.8002 -2.0705 0.6854 30 1 10.2046 -2.9380 2.0857 31 1 6.1909 1.4194 1.3777 32 1 5.8005 2.0802 -1.4691 33 1 6.3077 3.2669 -0.2382 34 1 3.8042 3.2096 -0.6856 35 1 4.2636 2.9513 1.0135 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962374879.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:21 Heat of formation + Delta-G solvation = -51.717770 kcal Electronic energy + Delta-G solvation = -18112.879925 eV Core-core repulsion = 15216.466960 eV Total energy + Delta-G solvation = -2896.412965 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.93506 -41.24982 -37.88600 -35.44187 -34.09040 -33.11001 -31.17184 -29.07154 -28.14401 -25.20403 -24.18625 -23.60837 -21.89509 -20.80531 -19.07318 -17.96448 -17.67645 -16.88022 -16.70621 -16.31824 -15.81054 -15.34607 -15.11681 -14.79934 -14.59114 -14.47143 -14.26403 -14.08005 -13.55658 -13.47154 -13.37173 -12.93876 -12.63021 -12.52245 -12.34236 -11.96968 -11.86866 -11.70310 -11.49423 -11.25753 -10.71978 -9.76813 -9.37473 -9.16928 -8.22186 -6.22362 0.12282 0.20188 1.33427 1.35199 1.45476 2.37068 2.49986 3.10167 3.22763 3.45480 3.64913 3.71882 3.85184 3.99800 4.14849 4.28253 4.44567 4.51037 4.58696 4.63485 4.74814 4.79209 4.87285 4.99582 5.01716 5.06366 5.16992 5.18027 5.25013 5.32466 5.36923 5.58463 5.69295 5.94785 6.23791 6.43356 6.60024 6.86690 7.38946 8.94800 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021743 B = 0.007575 C = 0.005885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.484874 B = 3695.383085 C = 4757.081631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.123 4.123 3 C -0.087 4.087 4 C -0.090 4.090 5 C -0.096 4.096 6 C -0.160 4.160 7 C 0.069 3.931 8 F -0.148 7.148 9 C 0.148 3.852 10 H 0.069 0.931 11 C 0.000 4.000 12 C -0.498 4.498 13 H 0.043 0.957 14 C 0.005 3.995 15 N -0.951 5.951 16 Si 0.937 3.063 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.253 1.253 20 N -0.676 5.676 21 C 0.051 3.949 22 C -0.108 4.108 23 H 0.084 0.916 24 H 0.062 0.938 25 H 0.095 0.905 26 H 0.167 0.833 27 H 0.123 0.877 28 H 0.015 0.985 29 H 0.021 0.979 30 H 0.263 0.737 31 H 0.341 0.659 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.875 9.855 -2.657 22.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.124 4.124 3 C -0.105 4.105 4 C -0.090 4.090 5 C -0.098 4.098 6 C -0.180 4.180 7 C 0.050 3.950 8 F -0.127 7.127 9 C 0.037 3.963 10 H 0.087 0.913 11 C -0.037 4.037 12 C -0.536 4.536 13 H 0.061 0.939 14 C -0.191 4.191 15 N -0.593 5.593 16 Si 0.762 3.238 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.177 1.177 20 N -0.305 5.305 21 C -0.078 4.078 22 C -0.146 4.146 23 H 0.103 0.897 24 H 0.081 0.919 25 H 0.113 0.887 26 H 0.184 0.816 27 H 0.141 0.859 28 H 0.034 0.966 29 H 0.039 0.961 30 H 0.072 0.928 31 H 0.159 0.841 32 H 0.084 0.916 33 H 0.115 0.885 34 H 0.127 0.873 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.159 9.670 -2.978 21.666 hybrid contribution -0.530 -1.402 0.860 1.728 sum -19.689 8.268 -2.118 21.459 Atomic orbital electron populations 1.20762 0.87989 1.04063 1.03650 1.20211 0.98455 0.91194 1.02539 1.21176 0.92577 0.98034 0.98691 1.19983 0.94286 0.94922 0.99839 1.20548 0.97541 0.92670 0.99031 1.21260 0.92771 0.99845 1.04081 1.17690 0.89783 0.81581 1.05912 1.91428 1.80426 1.46577 1.94263 1.20153 0.85985 0.90977 0.99169 0.91304 1.19639 0.95015 0.94147 0.94919 1.21256 0.91832 1.18507 1.22036 0.93894 1.25852 0.95534 0.98759 0.98911 1.70056 1.09140 1.37564 1.42573 0.85859 0.79319 0.79595 0.79050 1.19649 1.21028 1.17699 1.60829 1.59640 1.01123 1.08862 1.22224 0.92557 0.95091 0.97931 1.21234 0.96490 0.92913 1.03974 0.89744 0.91883 0.88664 0.81552 0.85932 0.96622 0.96113 0.92805 0.84083 0.91603 0.88483 0.87342 0.89109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.80 9.84 71.24 0.70 -1.10 16 2 C -0.12 -2.94 5.88 -19.86 -0.12 -3.06 16 3 C -0.09 -1.86 9.31 22.32 0.21 -1.65 16 4 C -0.09 -2.34 5.77 -19.84 -0.11 -2.45 16 5 C -0.10 -3.21 5.47 -19.87 -0.11 -3.32 16 6 C -0.16 -5.53 9.05 22.38 0.20 -5.33 16 7 C 0.07 2.12 7.24 22.33 0.16 2.28 16 8 F -0.15 -4.62 16.49 44.97 0.74 -3.87 16 9 C 0.15 5.86 2.47 44.20 0.11 5.97 16 10 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 11 C 0.00 0.01 3.24 29.85 0.10 0.11 16 12 C -0.50 -28.80 9.36 25.60 0.24 -28.56 16 13 H 0.04 2.76 7.99 -2.91 -0.02 2.74 16 14 C 0.01 0.32 5.47 84.65 0.46 0.78 16 15 N -0.95 -60.65 13.96 21.45 0.30 -60.35 16 16 Si 0.94 45.49 27.47 68.60 1.88 47.37 16 17 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 18 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 19 H -0.25 -11.58 6.54 99.48 0.65 -10.93 16 20 N -0.68 -24.44 6.32 -495.77 -3.14 -27.57 16 21 C 0.05 1.32 6.62 86.22 0.57 1.89 16 22 C -0.11 -2.18 5.82 29.82 0.17 -2.01 16 23 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.06 1.13 7.65 -2.39 -0.02 1.11 16 25 H 0.09 1.11 8.09 -2.38 -0.02 1.09 16 26 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 27 H 0.12 4.53 6.33 -2.91 -0.02 4.51 16 28 H 0.02 0.74 7.17 -2.39 -0.02 0.72 16 29 H 0.02 0.98 5.67 -2.39 -0.01 0.96 16 30 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 31 H 0.34 12.03 8.54 -89.69 -0.77 11.26 16 32 H 0.07 1.77 8.05 -2.39 -0.02 1.75 16 33 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -68.69 287.10 2.65 -66.03 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.28 Total: 14.83 kcal Atomic # 6 Polarization: -39.02 SS G_CDS: 2.59 Total: -36.44 kcal Atomic # 7 Polarization: -85.09 SS G_CDS: -2.84 Total: -87.92 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.74 Total: -3.87 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.88 Total: 47.37 kcal Total: -68.69 2.65 -66.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962374879.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.314 kcal (2) G-P(sol) polarization free energy of solvation -68.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds