Wall clock time and date at job start Mon Mar 30 2020 07:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31536 * 1 3 3 Si 1.86797 * 119.99776 * 2 1 4 4 H 1.48496 * 109.47374 * 240.00362 * 3 2 1 5 5 H 1.48500 * 109.47207 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47171 * 120.00239 * 3 2 1 7 7 C 1.38844 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00238 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99689 * 359.97438 * 7 2 1 10 10 C 1.38530 * 119.99603 * 180.02562 * 9 7 2 11 11 C 1.39703 * 120.53786 * 0.02562 * 10 9 7 12 12 C 1.38136 * 118.31919 * 179.97438 * 11 10 9 13 13 C 1.50706 * 120.39890 * 180.02562 * 12 11 10 14 14 F 1.39895 * 109.47042 * 89.99744 * 13 12 11 15 15 N 1.32552 * 119.19955 * 0.26815 * 12 11 10 16 16 C 1.31800 * 121.02513 * 359.44719 * 15 12 11 17 17 N 1.31739 * 121.84247 * 0.57275 * 16 15 12 18 18 H 0.97002 * 120.00441 * 359.97438 * 1 2 3 19 19 H 0.96993 * 120.00824 * 0.02562 * 9 7 2 20 20 H 1.08001 * 120.84399 * 359.97438 * 11 10 9 21 21 H 1.09001 * 109.46953 * 209.99451 * 13 12 11 22 22 H 1.09000 * 109.47318 * 329.99049 * 13 12 11 23 23 H 1.07999 * 119.08325 * 180.28494 * 16 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6965 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6964 1.2125 7 6 2.0096 -1.2024 -0.0005 8 1 3.0896 -1.2024 -0.0010 9 7 1.3249 -2.3883 -0.0005 10 6 2.0176 -3.5879 -0.0005 11 6 3.4146 -3.6010 0.0000 12 6 4.0585 -4.8231 0.0005 13 6 5.5640 -4.8918 0.0017 14 9 6.0288 -4.9130 1.3210 15 7 3.3363 -5.9345 -0.0049 16 6 2.0191 -5.8888 0.0001 17 7 1.3633 -4.7462 -0.0005 18 1 -0.4851 0.8400 0.0004 19 1 0.3550 -2.3884 -0.0005 20 1 3.9770 -2.6789 0.0000 21 1 5.8867 -5.7975 -0.5118 22 1 5.9680 -4.0194 -0.5120 23 1 1.4617 -6.8138 0.0001 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001537959218.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:38 Heat of formation + Delta-G solvation = -8.555445 kcal Electronic energy + Delta-G solvation = -11790.470904 eV Core-core repulsion = 9359.916773 eV Total energy + Delta-G solvation = -2430.554131 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 197.066 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -47.29286 -39.71067 -35.88093 -33.00488 -32.09683 -29.70082 -26.83327 -25.36622 -22.84412 -21.19964 -18.35696 -17.15039 -16.26911 -15.61456 -15.22866 -14.91776 -14.38591 -14.00031 -13.67630 -13.61755 -13.38762 -11.82374 -11.65756 -11.23813 -10.93247 -10.91987 -10.75468 -10.56991 -9.59285 -9.46428 -8.94081 -8.18684 -7.52145 -6.82900 -4.08572 1.99243 2.32480 3.03858 3.05887 3.06266 3.82330 4.54999 4.61639 4.72978 5.06842 5.11619 5.23652 5.48301 5.94188 6.08526 6.19464 6.46929 6.63678 7.03889 7.29672 7.61040 8.00861 8.50392 8.97642 9.09272 9.50069 10.32232 Molecular weight = 197.07amu Principal moments of inertia in cm(-1) A = 0.041319 B = 0.010309 C = 0.008434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.495849 B = 2715.303479 C = 3319.090940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.030 3.970 3 Si 0.940 3.060 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.311 4.311 8 H 0.107 0.893 9 N -0.507 5.507 10 C 0.370 3.630 11 C -0.279 4.279 12 C 0.137 3.863 13 C 0.125 3.875 14 F -0.211 7.211 15 N -0.606 5.606 16 C 0.331 3.669 17 N -0.605 5.605 18 H 0.281 0.719 19 H 0.407 0.593 20 H 0.131 0.869 21 H 0.086 0.914 22 H 0.086 0.914 23 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.152 -2.859 -1.160 6.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.177 4.177 3 Si 0.765 3.235 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.442 4.442 8 H 0.125 0.875 9 N -0.113 5.113 10 C 0.120 3.880 11 C -0.312 4.312 12 C -0.002 4.002 13 C 0.070 3.930 14 F -0.192 7.192 15 N -0.332 5.332 16 C 0.039 3.961 17 N -0.335 5.335 18 H 0.092 0.908 19 H 0.243 0.757 20 H 0.149 0.851 21 H 0.104 0.896 22 H 0.104 0.896 23 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 5.533 -3.143 -1.137 6.464 hybrid contribution 0.238 1.622 0.070 1.641 sum 5.772 -1.521 -1.067 6.063 Atomic orbital electron populations 1.69675 1.06224 1.29471 1.45602 1.25441 0.95812 1.00333 0.96068 0.85765 0.78888 0.79415 0.79442 1.19345 1.20392 1.19316 1.19772 0.93249 0.81964 1.49196 0.87519 1.40829 1.09037 1.01189 1.60256 1.18341 0.88572 0.86319 0.94726 1.21592 0.94593 0.98764 1.16239 1.21181 0.95522 0.89377 0.94094 1.20607 0.89065 1.03925 0.79453 1.92775 1.89393 1.98183 1.38876 1.68000 1.08291 1.30788 1.26161 1.24092 0.87339 0.94622 0.90022 1.67790 1.41388 0.97956 1.26318 0.90833 0.75686 0.85133 0.89554 0.89596 0.80635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.48 13.05 55.49 0.72 -21.76 14 2 C 0.03 0.74 5.50 -17.45 -0.10 0.65 14 3 Si 0.94 18.76 29.55 -169.99 -5.02 13.73 14 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 14 5 H -0.28 -5.53 7.11 56.52 0.40 -5.13 14 6 H -0.27 -5.29 7.11 56.52 0.40 -4.89 14 7 C -0.31 -7.73 9.56 -15.05 -0.14 -7.88 14 8 H 0.11 2.50 5.73 -52.49 -0.30 2.20 14 9 N -0.51 -12.69 5.43 -10.98 -0.06 -12.75 14 10 C 0.37 8.84 7.68 -154.72 -1.19 7.65 14 11 C -0.28 -6.10 9.07 -39.07 -0.35 -6.45 14 12 C 0.14 2.74 6.53 -82.32 -0.54 2.20 14 13 C 0.13 1.96 7.88 36.01 0.28 2.24 14 14 F -0.21 -3.70 17.34 2.25 0.04 -3.66 14 15 N -0.61 -12.41 10.37 -10.87 -0.11 -12.52 14 16 C 0.33 6.69 12.28 -92.20 -1.13 5.56 14 17 N -0.61 -13.83 10.47 -13.79 -0.14 -13.97 14 18 H 0.28 6.78 8.31 -40.82 -0.34 6.44 14 19 H 0.41 10.50 8.02 -40.82 -0.33 10.18 14 20 H 0.13 2.71 6.07 -52.49 -0.32 2.39 14 21 H 0.09 1.17 8.14 -51.93 -0.42 0.75 14 22 H 0.09 1.11 8.09 -51.93 -0.42 0.69 14 23 H 0.18 2.82 8.06 -52.49 -0.42 2.40 14 LS Contribution 218.47 15.07 3.29 3.29 Total: -1.00 -27.70 218.47 -5.80 -33.50 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -1.35 Total: 10.18 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -3.17 Total: 3.97 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: 0.41 Total: -61.01 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.04 Total: -3.66 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.02 Total: 13.73 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -27.70 -5.80 -33.50 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537959218.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.944 kcal (2) G-P(sol) polarization free energy of solvation -27.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds