Wall clock time and date at job start Mon Mar 30 2020 07:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47466 * 180.02562 * 4 3 2 6 6 C 1.38124 * 120.40138 * 125.00021 * 5 4 3 7 7 C 1.39619 * 118.33454 * 179.97438 * 6 5 4 8 8 N 1.38542 * 120.53619 * 180.02562 * 7 6 5 9 9 C 1.46493 * 120.00327 * 184.99688 * 8 7 6 10 10 C 1.46501 * 119.99411 * 4.99829 * 8 7 6 11 11 C 1.50695 * 109.47628 * 89.99820 * 10 8 7 12 12 H 1.08003 * 119.99742 * 0.02562 * 11 10 8 13 13 C 1.37875 * 120.00165 * 179.97438 * 11 10 8 14 14 N 1.31516 * 120.00146 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 119.99980 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47189 * 90.00192 * 15 13 11 17 17 H 1.48504 * 109.46911 * 209.99767 * 15 13 11 18 18 H 1.48497 * 109.47135 * 329.99661 * 15 13 11 19 19 N 1.32999 * 118.93697 * 359.97438 * 7 6 5 20 20 C 1.31747 * 120.68537 * 0.02562 * 19 7 6 21 21 N 1.31793 * 121.83270 * 359.73042 * 20 19 7 22 22 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 23 23 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 25 25 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 26 26 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 27 27 H 1.09002 * 109.47153 * 300.00307 * 4 3 2 28 28 H 1.08998 * 109.47533 * 59.99936 * 4 3 2 29 29 H 1.08000 * 120.82991 * 359.95583 * 6 5 4 30 30 H 1.08999 * 109.47403 * 90.00216 * 9 8 7 31 31 H 1.09005 * 109.46837 * 209.99707 * 9 8 7 32 32 H 1.08995 * 109.47071 * 329.99770 * 9 8 7 33 33 H 1.09004 * 109.47109 * 210.00229 * 10 8 7 34 34 H 1.09002 * 109.47307 * 329.99785 * 10 8 7 35 35 H 0.97000 * 120.00711 * 180.02562 * 14 13 11 36 36 H 1.08004 * 119.08680 * 179.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1485 2.5613 0.0000 6 6 5.0574 2.9212 0.9757 7 6 5.5990 4.2074 0.9348 8 7 6.5150 4.6163 1.8904 9 6 6.9930 6.0010 1.9019 10 6 7.0056 3.6637 2.8895 11 6 8.2397 2.9762 2.3648 12 1 8.6208 3.2244 1.3852 13 6 8.8829 2.0312 3.1356 14 7 9.9602 1.4316 2.6779 15 14 8.2241 1.6025 4.8302 16 1 7.2518 0.4859 4.7154 17 1 9.3485 1.1913 5.7089 18 1 7.5485 2.7893 5.4135 19 7 5.2223 5.0337 -0.0370 20 6 4.3519 4.6480 -0.9476 21 7 3.8263 3.4394 -0.9391 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6886 1.8464 -0.8900 26 1 1.6887 1.8463 0.8900 27 1 3.8575 0.6435 0.8891 28 1 3.8568 0.6439 -0.8908 29 1 5.3418 2.2253 1.7511 30 1 6.3406 6.6054 2.5321 31 1 8.0088 6.0314 2.2960 32 1 6.9853 6.3964 0.8862 33 1 7.2491 4.1951 3.8095 34 1 6.2344 2.9206 3.0925 35 1 10.4125 0.7665 3.2200 36 1 4.0638 5.3402 -1.7251 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001537959240.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:56 Heat of formation + Delta-G solvation = 7.272634 kcal Electronic energy + Delta-G solvation = -18124.114032 eV Core-core repulsion = 15222.867566 eV Total energy + Delta-G solvation = -2901.246466 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.44514 -37.93485 -36.62723 -34.03652 -32.69914 -31.17784 -29.99824 -28.59337 -26.68940 -25.57337 -23.84769 -23.37704 -21.99337 -20.08974 -17.20100 -17.07403 -16.82605 -16.16379 -15.93792 -15.05739 -14.89416 -14.62316 -14.38702 -14.07794 -13.82030 -13.25345 -13.01573 -12.65710 -12.46699 -12.01449 -11.84089 -11.57301 -11.41289 -11.18524 -11.09247 -10.75410 -10.56364 -10.06583 -10.05990 -9.69321 -9.61052 -9.17989 -8.76397 -8.67515 -7.14599 -6.24814 -4.27150 1.57154 1.92255 3.14880 3.21992 3.23403 3.55270 3.71800 4.22783 4.41291 4.56909 4.82101 5.05255 5.09714 5.12661 5.25372 5.32179 5.36472 5.51962 5.53513 5.75308 5.86059 5.90768 5.96798 6.04949 6.08969 6.26378 6.32234 6.52781 6.58979 6.88142 7.11353 7.28243 7.38182 7.92756 7.97814 8.33852 8.77788 8.83309 9.33032 10.87990 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.017523 B = 0.006335 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.487609 B = 4418.777108 C = 5539.376323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.394 6.394 3 C 0.073 3.927 4 C -0.064 4.064 5 C 0.191 3.809 6 C -0.270 4.270 7 C 0.448 3.552 8 N -0.573 5.573 9 C 0.099 3.901 10 C 0.219 3.781 11 C -0.542 4.542 12 H 0.077 0.923 13 C 0.077 3.923 14 N -0.889 5.889 15 Si 0.871 3.129 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.265 1.265 19 N -0.592 5.592 20 C 0.330 3.670 21 N -0.579 5.579 22 H 0.040 0.960 23 H 0.084 0.916 24 H 0.039 0.961 25 H 0.062 0.938 26 H 0.046 0.954 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.146 0.854 30 H 0.040 0.960 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.038 0.962 34 H 0.031 0.969 35 H 0.267 0.733 36 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.781 2.422 -2.535 15.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.313 6.313 3 C -0.004 4.004 4 C -0.102 4.102 5 C 0.050 3.950 6 C -0.299 4.299 7 C 0.204 3.796 8 N -0.281 5.281 9 C -0.044 4.044 10 C 0.098 3.902 11 C -0.581 4.581 12 H 0.095 0.905 13 C -0.127 4.127 14 N -0.527 5.527 15 Si 0.698 3.302 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.189 1.189 19 N -0.319 5.319 20 C 0.040 3.960 21 N -0.301 5.301 22 H 0.059 0.941 23 H 0.102 0.898 24 H 0.058 0.942 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.163 0.837 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -14.584 2.781 -2.965 15.140 hybrid contribution 0.047 -0.601 1.514 1.629 sum -14.536 2.180 -1.451 14.770 Atomic orbital electron populations 1.22701 0.81199 1.02481 0.99920 1.87844 1.19568 1.28437 1.95486 1.22390 0.93004 0.84098 1.00899 1.20332 0.93266 0.91893 1.04758 1.20855 0.91046 0.94311 0.88757 1.22079 1.04459 0.98327 1.05001 1.18538 0.86118 0.88624 0.86340 1.46678 1.40788 1.11221 1.29382 1.21527 0.99058 0.81515 1.02325 1.19850 0.95229 0.88158 0.86913 1.21368 1.09448 1.22236 1.05030 0.90471 1.24866 0.94551 0.95314 0.97953 1.69886 1.18626 1.26366 1.37793 0.86924 0.79221 0.79557 0.84524 1.19674 1.20724 1.18929 1.67917 1.19731 1.37908 1.06300 1.24378 0.87370 0.90750 0.93534 1.68082 1.30877 1.04160 1.26935 0.94107 0.89789 0.94241 0.91933 0.93581 0.89257 0.88911 0.83664 0.94109 0.91114 0.90919 0.94433 0.95131 0.92262 0.79768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.39 -5.24 10.70 -35.23 -0.38 -5.62 16 3 C 0.07 0.96 5.81 37.16 0.22 1.18 16 4 C -0.06 -0.95 6.01 -27.89 -0.17 -1.11 16 5 C 0.19 3.30 6.19 -82.33 -0.51 2.79 16 6 C -0.27 -5.25 8.95 -39.11 -0.35 -5.60 16 7 C 0.45 9.13 7.39 -154.77 -1.14 7.98 16 8 N -0.57 -11.90 2.96 -182.93 -0.54 -12.44 16 9 C 0.10 1.74 10.51 59.84 0.63 2.37 16 10 C 0.22 4.95 4.10 -5.20 -0.02 4.93 16 11 C -0.54 -14.62 9.94 -34.44 -0.34 -14.96 16 12 H 0.08 2.36 8.06 -52.48 -0.42 1.94 16 13 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 14 N -0.89 -26.17 13.96 55.43 0.77 -25.40 16 15 Si 0.87 19.90 27.47 -169.99 -4.67 15.23 16 16 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 19 N -0.59 -11.11 9.23 -13.81 -0.13 -11.24 16 20 C 0.33 5.41 12.28 -92.20 -1.13 4.28 16 21 N -0.58 -9.82 10.04 -10.88 -0.11 -9.93 16 22 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 23 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.82 7.99 -51.93 -0.41 0.40 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.09 1.27 7.93 -51.93 -0.41 0.86 16 28 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.15 2.87 6.10 -52.49 -0.32 2.55 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 32 H 0.07 1.24 7.33 -51.93 -0.38 0.86 16 33 H 0.04 0.83 7.13 -51.93 -0.37 0.46 16 34 H 0.03 0.67 5.47 -51.93 -0.28 0.39 16 35 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.19 2.28 8.06 -52.48 -0.42 1.85 16 LS Contribution 306.09 15.07 4.61 4.61 Total: -1.00 -30.67 306.09 -7.40 -38.07 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -5.15 Total: 1.43 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -1.81 Total: 5.29 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: 0.00 Total: -59.01 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -0.38 Total: -5.62 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.67 Total: 15.23 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.67 -7.40 -38.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537959240.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.340 kcal (2) G-P(sol) polarization free energy of solvation -30.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds