Wall clock time and date at job start Mon Mar 30 2020 07:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47193 * 2 1 4 4 C 1.53001 * 109.46590 * 240.00114 * 2 1 3 5 5 C 1.50700 * 109.47356 * 120.00119 * 2 1 3 6 6 C 1.38177 * 120.39808 * 75.30237 * 5 2 1 7 7 C 1.39668 * 118.31703 * 180.25937 * 6 5 2 8 8 N 1.38524 * 120.54043 * 179.70937 * 7 6 5 9 9 C 1.36931 * 119.99575 * 359.72898 * 8 7 6 10 10 H 1.08002 * 120.00438 * 359.97438 * 9 8 7 11 11 C 1.38853 * 119.99605 * 179.71908 * 9 8 7 12 12 N 1.31534 * 120.00351 * 0.27497 * 11 9 8 13 13 Si 1.86803 * 119.99786 * 180.27670 * 11 9 8 14 14 H 1.48498 * 109.47174 * 90.00112 * 13 11 9 15 15 H 1.48501 * 109.47062 * 210.00063 * 13 11 9 16 16 H 1.48503 * 109.47284 * 329.99759 * 13 11 9 17 17 N 1.33073 * 118.92369 * 359.44729 * 7 6 5 18 18 C 1.31705 * 120.68734 * 0.26503 * 17 7 6 19 19 N 1.31821 * 121.84499 * 0.03320 * 18 17 7 20 20 H 1.08999 * 109.46858 * 300.00151 * 1 2 3 21 21 H 1.08998 * 109.47436 * 59.99896 * 1 2 3 22 22 H 1.08994 * 109.47234 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46953 * 180.02562 * 3 2 1 24 24 H 1.09008 * 109.46997 * 300.00360 * 3 2 1 25 25 H 1.08999 * 109.46690 * 59.99767 * 3 2 1 26 26 H 1.08997 * 109.47083 * 299.99482 * 4 2 1 27 27 H 1.08998 * 109.47244 * 60.00658 * 4 2 1 28 28 H 1.09011 * 109.46709 * 179.97438 * 4 2 1 29 29 H 1.07995 * 120.84120 * 359.97438 * 6 5 2 30 30 H 0.97000 * 120.00005 * 179.72233 * 8 7 6 31 31 H 0.97000 * 119.99596 * 179.97438 * 12 11 9 32 32 H 1.08001 * 119.07603 * 180.02562 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.9804 -2.0888 1.3122 7 6 2.4528 -2.7018 2.4748 8 7 2.4169 -4.0801 2.6082 9 6 1.9102 -4.8528 1.5976 10 1 1.5382 -4.3876 0.6967 11 6 1.8796 -6.2347 1.7289 12 7 2.3323 -6.8014 2.8263 13 14 1.1956 -7.2893 0.3471 14 1 2.2909 -7.6511 -0.5881 15 1 0.6015 -8.5258 0.9157 16 1 0.1505 -6.5293 -0.3848 17 7 2.9427 -1.9407 3.4502 18 6 2.9782 -0.6299 3.3266 19 7 2.5349 -0.0211 2.2447 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6766 -1.7489 -1.2492 27 1 1.6766 -0.2073 -2.1392 28 1 3.1300 -0.7209 -1.2496 29 1 1.5804 -2.6769 0.4995 30 1 2.7507 -4.4979 3.4175 31 1 2.3105 -7.7668 2.9181 32 1 3.3818 -0.0373 4.1342 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001537959415.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:36 Heat of formation + Delta-G solvation = 14.481740 kcal Electronic energy + Delta-G solvation = -14930.015298 eV Core-core repulsion = 12503.301253 eV Total energy + Delta-G solvation = -2426.714045 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.57203 -38.19105 -37.16629 -34.23331 -32.61564 -30.99644 -28.16877 -28.07158 -26.97494 -24.93723 -23.77151 -20.53815 -20.01101 -18.36665 -17.54856 -16.52919 -15.93169 -15.68980 -15.58549 -15.45475 -14.80760 -14.69722 -14.47280 -13.52814 -13.36300 -13.05558 -12.85410 -12.58293 -12.51912 -12.46904 -12.11753 -12.02172 -11.85064 -11.81719 -11.04219 -11.02533 -10.42665 -9.74650 -9.21317 -8.59435 -5.93445 0.52673 0.74297 1.40648 1.48586 1.54436 2.19105 2.88535 2.98204 3.41283 3.41566 3.74934 4.09868 4.17902 4.26373 4.46028 4.68732 4.82273 4.85951 4.87819 4.95686 5.05674 5.08892 5.14042 5.20081 5.29045 5.31940 5.48111 5.60125 5.68889 6.02834 6.38782 6.74084 7.27247 7.37251 7.83992 8.58582 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.031018 B = 0.008532 C = 0.007011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.498071 B = 3281.108060 C = 3992.544813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.021 4.021 3 C -0.114 4.114 4 C -0.135 4.135 5 C 0.201 3.799 6 C -0.315 4.315 7 C 0.364 3.636 8 N -0.540 5.540 9 C -0.326 4.326 10 H 0.111 0.889 11 C -0.020 4.020 12 N -0.920 5.920 13 Si 1.005 2.995 14 H -0.269 1.269 15 H -0.278 1.278 16 H -0.254 1.254 17 N -0.634 5.634 18 C 0.323 3.677 19 N -0.602 5.602 20 H 0.047 0.953 21 H 0.089 0.911 22 H 0.047 0.953 23 H 0.043 0.957 24 H 0.075 0.925 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.088 0.912 28 H 0.045 0.955 29 H 0.129 0.871 30 H 0.393 0.607 31 H 0.280 0.720 32 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.910 9.779 -7.784 12.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.022 4.022 3 C -0.171 4.171 4 C -0.192 4.192 5 C 0.061 3.939 6 C -0.346 4.346 7 C 0.117 3.883 8 N -0.148 5.148 9 C -0.456 4.456 10 H 0.129 0.871 11 C -0.221 4.221 12 N -0.558 5.558 13 Si 0.827 3.173 14 H -0.194 1.194 15 H -0.203 1.203 16 H -0.178 1.178 17 N -0.364 5.364 18 C 0.032 3.968 19 N -0.327 5.327 20 H 0.066 0.934 21 H 0.108 0.892 22 H 0.066 0.934 23 H 0.062 0.938 24 H 0.094 0.906 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.107 0.893 28 H 0.064 0.936 29 H 0.146 0.854 30 H 0.227 0.773 31 H 0.090 0.910 32 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -2.628 9.828 -7.154 12.437 hybrid contribution -0.139 -1.699 -0.126 1.710 sum -2.768 8.129 -7.279 11.257 Atomic orbital electron populations 1.21803 0.92287 1.01868 1.02759 1.19611 0.96493 0.96164 0.89900 1.21562 1.00331 0.93182 1.02044 1.21884 1.00634 1.00281 0.96429 1.21526 0.88830 0.89455 0.94048 1.21648 1.15992 0.96363 1.00578 1.18846 0.92813 0.85759 0.90892 1.40834 1.54554 1.00890 1.18534 1.20072 1.38559 0.88897 0.98076 0.87098 1.26354 0.97153 0.98063 1.00533 1.69797 1.45369 1.12633 1.28005 0.84738 0.78681 0.77138 0.76773 1.19437 1.20307 1.17804 1.67832 1.27469 1.08638 1.32424 1.24890 0.90436 0.86717 0.94746 1.68185 1.20921 1.40601 1.02955 0.93358 0.89173 0.93422 0.93824 0.90585 0.92636 0.93037 0.89274 0.93565 0.85355 0.77267 0.91036 0.77372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 8.42 71.98 0.61 -2.69 16 2 C -0.02 -0.60 0.88 -52.92 -0.05 -0.64 16 3 C -0.11 -2.86 7.83 71.98 0.56 -2.29 16 4 C -0.13 -3.49 8.09 71.98 0.58 -2.91 16 5 C 0.20 7.69 5.56 42.44 0.24 7.93 16 6 C -0.31 -13.80 8.44 22.60 0.19 -13.61 16 7 C 0.36 17.92 7.68 133.15 1.02 18.95 16 8 N -0.54 -28.56 5.43 -188.66 -1.02 -29.59 16 9 C -0.33 -16.95 9.56 84.04 0.80 -16.15 16 10 H 0.11 5.44 5.73 -2.91 -0.02 5.42 16 11 C -0.02 -1.01 5.50 84.88 0.47 -0.54 16 12 N -0.92 -49.91 13.05 21.65 0.28 -49.63 16 13 Si 1.00 39.46 29.55 68.60 2.03 41.48 16 14 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 15 H -0.28 -10.74 7.11 99.48 0.71 -10.03 16 16 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 17 N -0.63 -29.48 10.47 -197.55 -2.07 -31.55 16 18 C 0.32 12.75 12.28 180.90 2.22 14.98 16 19 N -0.60 -23.31 9.19 -188.32 -1.73 -25.04 16 20 H 0.05 1.28 8.14 -2.39 -0.02 1.27 16 21 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.05 1.31 8.12 -2.39 -0.02 1.29 16 23 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 25 H 0.05 1.48 7.88 -2.39 -0.02 1.47 16 26 H 0.05 1.44 6.78 -2.39 -0.02 1.42 16 27 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.13 5.52 4.83 -2.91 -0.01 5.50 16 30 H 0.39 21.88 8.02 -92.71 -0.74 21.13 16 31 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 32 H 0.21 6.39 8.06 -2.91 -0.02 6.37 16 Total: -1.00 -59.61 269.85 4.52 -55.09 By element: Atomic # 1 Polarization: 35.84 SS G_CDS: 0.38 Total: 36.22 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 6.65 Total: 3.01 kcal Atomic # 7 Polarization: -131.27 SS G_CDS: -4.54 Total: -135.81 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.48 kcal Total: -59.61 4.52 -55.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537959415.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.572 kcal (2) G-P(sol) polarization free energy of solvation -59.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds