Wall clock time and date at job start Mon Mar 30 2020 07:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46505 * 119.99771 * 2 1 4 4 C 1.50696 * 109.47083 * 269.99815 * 3 2 1 5 5 H 1.08005 * 120.00103 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00127 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99885 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00209 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46925 * 0.02562 * 8 6 4 10 10 H 1.48490 * 109.47070 * 120.00305 * 8 6 4 11 11 H 1.48506 * 109.46929 * 240.00452 * 8 6 4 12 12 C 1.38538 * 119.99892 * 179.97438 * 2 1 3 13 13 C 1.39672 * 120.52805 * 184.99817 * 12 2 1 14 14 C 1.38077 * 118.32665 * 179.97438 * 13 12 2 15 15 C 1.50706 * 120.39419 * 180.02562 * 14 13 12 16 16 F 1.39895 * 109.47042 * 89.99874 * 15 14 13 17 17 N 1.32577 * 119.20531 * 0.27251 * 14 13 12 18 18 C 1.31759 * 121.00879 * 359.44705 * 17 14 13 19 19 N 1.31780 * 121.83574 * 0.56539 * 18 17 14 20 20 H 1.08996 * 109.46889 * 270.00348 * 1 2 3 21 21 H 1.09003 * 109.46691 * 30.00110 * 1 2 3 22 22 H 1.08992 * 109.47079 * 149.99798 * 1 2 3 23 23 H 1.08995 * 109.47408 * 30.00292 * 3 2 1 24 24 H 1.09004 * 109.46713 * 150.00586 * 3 2 1 25 25 H 0.96997 * 120.00145 * 179.97438 * 7 6 4 26 26 H 1.07989 * 120.83527 * 0.02562 * 13 12 2 27 27 H 1.09001 * 109.46953 * 209.99581 * 15 14 13 28 28 H 1.09000 * 109.47318 * 329.99179 * 15 14 13 29 29 H 1.08008 * 119.08362 * 180.26657 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0982 1.0958 -2.2417 6 6 3.1269 2.8775 -1.6728 7 7 3.5551 3.6172 -0.6731 8 14 3.4376 3.4171 -3.4339 9 1 2.8587 2.4177 -4.3673 10 1 2.8007 4.7381 -3.6665 11 1 4.9002 3.5246 -3.6679 12 6 2.1577 -1.1998 0.0005 13 6 3.5504 -1.2149 0.1054 14 6 4.1945 -2.4363 0.1018 15 6 5.6958 -2.5069 0.2131 16 9 6.0602 -2.5853 1.5614 17 7 3.4767 -3.5458 -0.0056 18 6 2.1632 -3.4983 -0.0975 19 7 1.5073 -2.3553 -0.0982 20 1 -0.3633 0.0001 1.0276 21 1 -0.3633 0.8900 -0.5139 22 1 -0.3633 -0.8899 -0.5138 23 1 1.6085 2.0284 0.5138 24 1 3.1500 1.1384 0.5138 25 1 4.0325 4.4427 -0.8504 26 1 4.1093 -0.2946 0.1879 27 1 6.0579 -3.3902 -0.3131 28 1 6.1355 -1.6139 -0.2309 29 1 1.6089 -4.4216 -0.1794 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001537959461.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:41 Heat of formation + Delta-G solvation = -15.448905 kcal Electronic energy + Delta-G solvation = -15135.306414 eV Core-core repulsion = 12393.378122 eV Total energy + Delta-G solvation = -2741.928291 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 225.097 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.69747 -41.79930 -38.14737 -35.12760 -34.36427 -32.46842 -30.02034 -28.82621 -26.69738 -25.63596 -24.07025 -22.00663 -18.78416 -18.65746 -18.36847 -17.05481 -16.73798 -16.67982 -16.25780 -15.97276 -15.80030 -15.33184 -14.93932 -14.74479 -14.02673 -13.39816 -13.18100 -12.86499 -12.71626 -12.62364 -12.26294 -12.12008 -12.10668 -11.60077 -11.49836 -10.83897 -10.67386 -10.16576 -8.82305 -8.21758 -6.43017 0.06161 0.40246 1.37241 1.40073 1.50954 2.05768 2.37291 2.91165 3.02217 3.03379 3.40726 3.68876 3.96464 4.13350 4.22346 4.42326 4.53815 4.63523 4.68852 4.75108 4.89847 4.95986 5.10668 5.43067 5.57480 5.80633 5.96391 6.38714 6.47707 6.70842 7.26337 7.34784 8.78843 Molecular weight = 225.10amu Principal moments of inertia in cm(-1) A = 0.024165 B = 0.008783 C = 0.007331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.443434 B = 3187.174895 C = 3818.734109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.587 5.587 3 C 0.261 3.739 4 C -0.548 4.548 5 H 0.049 0.951 6 C 0.021 3.979 7 N -0.920 5.920 8 Si 0.962 3.038 9 H -0.273 1.273 10 H -0.275 1.275 11 H -0.274 1.274 12 C 0.428 3.572 13 C -0.278 4.278 14 C 0.145 3.855 15 C 0.122 3.878 16 F -0.217 7.217 17 N -0.571 5.571 18 C 0.329 3.671 19 N -0.595 5.595 20 H 0.057 0.943 21 H 0.067 0.933 22 H 0.078 0.922 23 H 0.027 0.973 24 H 0.025 0.975 25 H 0.270 0.730 26 H 0.136 0.864 27 H 0.120 0.880 28 H 0.112 0.888 29 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.032 -9.579 0.025 9.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.296 5.296 3 C 0.140 3.860 4 C -0.587 4.587 5 H 0.068 0.932 6 C -0.179 4.179 7 N -0.559 5.559 8 Si 0.787 3.213 9 H -0.198 1.198 10 H -0.201 1.201 11 H -0.200 1.200 12 C 0.184 3.816 13 C -0.307 4.307 14 C 0.003 3.997 15 C 0.067 3.933 16 F -0.198 7.198 17 N -0.292 5.292 18 C 0.040 3.960 19 N -0.321 5.321 20 H 0.075 0.925 21 H 0.086 0.914 22 H 0.096 0.904 23 H 0.045 0.955 24 H 0.043 0.957 25 H 0.079 0.921 26 H 0.153 0.847 27 H 0.138 0.862 28 H 0.130 0.870 29 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -0.476 -9.987 0.035 9.998 hybrid contribution 0.477 1.510 -0.578 1.686 sum 0.001 -8.477 -0.543 8.494 Atomic orbital electron populations 1.21617 0.78172 1.02997 1.01496 1.47019 1.06920 1.02999 1.72670 1.19102 0.91652 0.78805 0.96409 1.21668 1.37259 1.07023 0.92730 0.93237 1.25694 0.94770 0.96054 1.01431 1.70016 1.38368 1.14804 1.32725 0.85446 0.78191 0.78151 0.79521 1.19765 1.20059 1.19982 1.18814 0.88932 0.86971 0.86918 1.22171 0.94835 1.00668 1.12988 1.21957 0.98157 0.88105 0.91460 1.20913 0.86948 1.07080 0.78396 1.92772 1.92134 1.98166 1.36765 1.68228 1.09076 1.30861 1.21066 1.25322 0.87356 0.95629 0.87727 1.68007 1.41669 0.98074 1.24332 0.92483 0.91394 0.90358 0.95516 0.95744 0.92090 0.84658 0.86173 0.87021 0.75313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.52 10.51 127.77 1.34 4.86 15 2 N -0.59 -25.14 2.96 -732.63 -2.17 -27.31 15 3 C 0.26 12.83 5.03 85.63 0.43 13.26 15 4 C -0.55 -29.03 9.39 25.60 0.24 -28.79 15 5 H 0.05 2.69 7.81 -2.91 -0.02 2.67 15 6 C 0.02 1.11 5.46 84.65 0.46 1.57 15 7 N -0.92 -50.85 13.29 21.45 0.28 -50.57 15 8 Si 0.96 41.80 29.54 68.60 2.03 43.83 15 9 H -0.27 -11.79 7.11 99.48 0.71 -11.08 15 10 H -0.28 -11.62 7.11 99.48 0.71 -10.92 15 11 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 12 C 0.43 17.69 7.39 133.18 0.98 18.68 15 13 C -0.28 -11.10 9.01 22.58 0.20 -10.90 15 14 C 0.15 4.99 6.53 42.41 0.28 5.26 15 15 C 0.12 3.27 7.88 71.24 0.56 3.83 15 16 F -0.22 -6.72 17.34 44.97 0.78 -5.94 15 17 N -0.57 -18.89 10.37 -188.34 -1.95 -20.84 15 18 C 0.33 10.24 12.28 180.90 2.22 12.46 15 19 N -0.59 -21.81 9.23 -197.59 -1.82 -23.63 15 20 H 0.06 1.80 8.14 -2.39 -0.02 1.78 15 21 H 0.07 2.38 8.07 -2.39 -0.02 2.36 15 22 H 0.08 2.61 7.33 -2.39 -0.02 2.59 15 23 H 0.03 1.37 8.07 -2.39 -0.02 1.36 15 24 H 0.02 1.27 6.05 -2.39 -0.01 1.26 15 25 H 0.27 14.02 8.31 -92.71 -0.77 13.25 15 26 H 0.14 5.77 6.16 -2.92 -0.02 5.75 15 27 H 0.12 2.55 8.14 -2.39 -0.02 2.53 15 28 H 0.11 2.63 8.09 -2.39 -0.02 2.61 15 29 H 0.23 4.88 8.06 -2.91 -0.02 4.85 15 Total: -1.00 -61.12 261.76 5.03 -56.10 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 1.16 Total: 8.12 kcal Atomic # 6 Polarization: 13.51 SS G_CDS: 6.72 Total: 20.24 kcal Atomic # 7 Polarization: -116.69 SS G_CDS: -5.66 Total: -122.35 kcal Atomic # 9 Polarization: -6.72 SS G_CDS: 0.78 Total: -5.94 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -61.12 5.03 -56.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537959461.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.649 kcal (2) G-P(sol) polarization free energy of solvation -61.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds