Wall clock time and date at job start Mon Mar 30 2020 07:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31532 * 1 3 3 Si 1.86794 * 120.00273 * 2 1 4 4 H 1.48501 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47074 * 299.99911 * 3 2 1 6 6 H 1.48494 * 109.47224 * 59.99876 * 3 2 1 7 7 C 1.38853 * 119.99815 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00061 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.38526 * 120.00197 * 179.97438 * 9 7 2 11 11 C 1.39714 * 120.53550 * 0.02562 * 10 9 7 12 12 C 1.38132 * 118.32027 * 180.22802 * 11 10 9 13 13 C 1.50695 * 120.40276 * 179.74235 * 12 11 10 14 14 H 1.09005 * 110.43850 * 203.90602 * 13 12 11 15 15 C 1.54814 * 110.48580 * 81.22206 * 13 12 11 16 16 C 1.55003 * 102.08957 * 220.44496 * 15 13 12 17 17 O 1.44375 * 103.48943 * 37.02345 * 16 15 13 18 18 C 1.43740 * 106.98034 * 319.93627 * 17 16 15 19 19 N 1.32570 * 119.19344 * 359.48982 * 12 11 10 20 20 C 1.31787 * 121.02801 * 0.52023 * 19 12 11 21 21 N 1.31739 * 121.84407 * 359.73358 * 20 19 12 22 22 H 0.96994 * 119.99839 * 359.97438 * 1 2 3 23 23 H 0.97003 * 120.00004 * 359.97438 * 9 7 2 24 24 H 1.08002 * 120.83777 * 359.94612 * 11 10 9 25 25 H 1.08997 * 110.90714 * 338.64265 * 15 13 12 26 26 H 1.08994 * 110.90773 * 102.24761 * 15 13 12 27 27 H 1.09003 * 110.61597 * 278.51769 * 16 15 13 28 28 H 1.08998 * 110.74881 * 155.58825 * 16 15 13 29 29 H 1.09003 * 109.88185 * 267.10021 * 18 17 16 30 30 H 1.08993 * 110.00832 * 146.00910 * 18 17 16 31 31 H 1.08001 * 119.07950 * 179.70608 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2494 1.6176 0.0000 4 1 3.7094 1.3463 -0.0006 5 1 1.8907 2.3963 -1.2125 6 1 1.8907 2.3964 1.2124 7 6 2.0095 -1.2025 0.0005 8 1 3.0895 -1.2026 0.0001 9 7 1.3249 -2.3883 0.0005 10 6 2.0174 -3.5881 0.0005 11 6 3.4145 -3.6012 0.0011 12 6 4.0584 -4.8233 -0.0038 13 6 5.5637 -4.8922 -0.0093 14 1 5.8998 -5.8415 -0.4264 15 6 6.1202 -4.6989 1.4224 16 6 7.3559 -3.7974 1.1715 17 8 6.9213 -2.9174 0.1127 18 6 6.1547 -3.7132 -0.8066 19 7 3.3359 -5.9348 0.0015 20 6 2.0188 -5.8889 0.0011 21 7 1.3631 -4.7463 0.0006 22 1 -0.4849 0.8400 0.0004 23 1 0.3548 -2.3883 0.0005 24 1 3.9768 -2.6791 0.0006 25 1 5.3926 -4.1936 2.0576 26 1 6.4169 -5.6536 1.8566 27 1 8.2080 -4.3955 0.8482 28 1 7.6060 -3.2273 2.0661 29 1 6.8011 -4.0893 -1.5997 30 1 5.3504 -3.1160 -1.2360 31 1 1.4614 -6.8139 0.0007 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001537959517.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:54 Heat of formation + Delta-G solvation = -1.059615 kcal Electronic energy + Delta-G solvation = -16337.891629 eV Core-core repulsion = 13619.132947 eV Total energy + Delta-G solvation = -2718.758682 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.11239 -38.74880 -35.80902 -33.52093 -32.30744 -30.69231 -29.68392 -28.18146 -25.29838 -23.83947 -22.35997 -22.01732 -20.19217 -18.27568 -16.98804 -16.58358 -15.81284 -15.36541 -14.86138 -14.52994 -14.25464 -13.92442 -13.73939 -13.44872 -12.90860 -12.55173 -11.87002 -11.76524 -11.51146 -11.25302 -11.19996 -10.81991 -10.73102 -10.61102 -10.47887 -9.63063 -9.44085 -9.26848 -8.72973 -8.11000 -7.43497 -6.76653 -4.01851 2.11014 2.40970 3.08937 3.09864 3.15344 3.88796 4.10097 4.55446 4.62868 4.75626 4.88332 5.03323 5.22658 5.28598 5.34452 5.43737 5.57451 5.79520 5.87378 5.92081 6.07575 6.17921 6.28561 6.35549 6.59716 6.79252 7.02322 7.13592 7.39342 7.69940 8.10346 8.58237 9.06289 9.17277 9.57980 10.38869 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.021030 B = 0.008893 C = 0.006529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.124241 B = 3147.767692 C = 4287.319761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.029 3.971 3 Si 0.936 3.064 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.307 4.307 8 H 0.108 0.892 9 N -0.511 5.511 10 C 0.373 3.627 11 C -0.298 4.298 12 C 0.190 3.810 13 C -0.065 4.065 14 H 0.095 0.905 15 C -0.140 4.140 16 C 0.047 3.953 17 O -0.376 6.376 18 C 0.049 3.951 19 N -0.615 5.615 20 C 0.330 3.670 21 N -0.610 5.610 22 H 0.279 0.721 23 H 0.406 0.594 24 H 0.133 0.867 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.966 -5.182 0.886 11.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.438 4.438 8 H 0.126 0.874 9 N -0.117 5.117 10 C 0.124 3.876 11 C -0.330 4.330 12 C 0.052 3.948 13 C -0.085 4.085 14 H 0.114 0.886 15 C -0.178 4.178 16 C -0.030 4.030 17 O -0.294 6.294 18 C -0.028 4.028 19 N -0.341 5.341 20 C 0.038 3.962 21 N -0.340 5.340 22 H 0.089 0.911 23 H 0.242 0.758 24 H 0.151 0.849 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.077 0.923 30 H 0.115 0.885 31 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 9.379 -5.242 0.861 10.779 hybrid contribution 0.132 1.307 0.021 1.314 sum 9.510 -3.935 0.883 10.330 Atomic orbital electron populations 1.69692 1.06198 1.29099 1.46294 1.25419 0.95782 1.00275 0.96263 0.85688 0.79761 0.80186 0.78219 1.18610 1.20241 1.20236 1.19868 0.93301 0.81917 1.48689 0.87406 1.40827 1.08944 1.01230 1.60715 1.18372 0.88662 0.86208 0.94339 1.21584 0.94253 0.99158 1.18009 1.20546 0.94020 0.88754 0.91523 1.21301 0.91038 0.99894 0.96249 0.88630 1.23144 0.97693 1.00638 0.96348 1.23555 0.95934 0.92304 0.91218 1.88883 1.70814 1.33312 1.36421 1.23395 0.95184 0.92252 0.91970 1.67987 1.08079 1.31110 1.26950 1.24044 0.87452 0.94535 0.90143 1.67775 1.41472 0.97982 1.26743 0.91074 0.75840 0.84950 0.90085 0.90058 0.92390 0.89091 0.92312 0.88500 0.80958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.96 13.05 55.49 0.72 -22.24 16 2 C 0.03 0.72 5.50 -17.45 -0.10 0.63 16 3 Si 0.94 19.38 29.55 -169.99 -5.02 14.35 16 4 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.31 -7.79 9.56 -15.05 -0.14 -7.93 16 8 H 0.11 2.64 5.73 -52.49 -0.30 2.34 16 9 N -0.51 -12.94 5.43 -10.98 -0.06 -13.00 16 10 C 0.37 8.94 7.68 -154.73 -1.19 7.75 16 11 C -0.30 -6.50 8.05 -39.07 -0.31 -6.82 16 12 C 0.19 3.70 5.75 -82.31 -0.47 3.23 16 13 C -0.07 -1.01 3.46 -90.24 -0.31 -1.32 16 14 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 15 C -0.14 -1.91 6.70 -24.72 -0.17 -2.08 16 16 C 0.05 0.58 7.72 38.22 0.29 0.87 16 17 O -0.38 -5.97 11.52 -35.23 -0.41 -6.38 16 18 C 0.05 0.74 6.88 37.74 0.26 1.00 16 19 N -0.61 -12.31 10.37 -10.88 -0.11 -12.42 16 20 C 0.33 6.63 12.28 -92.21 -1.13 5.50 16 21 N -0.61 -13.94 10.47 -13.79 -0.14 -14.09 16 22 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 23 H 0.41 10.61 8.02 -40.82 -0.33 10.29 16 24 H 0.13 2.89 4.80 -52.49 -0.25 2.64 16 25 H 0.08 1.26 7.86 -51.93 -0.41 0.85 16 26 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.10 1.63 6.03 -51.93 -0.31 1.32 16 31 H 0.17 2.78 8.06 -52.49 -0.42 2.35 16 LS Contribution 264.81 15.07 3.99 3.99 Total: -1.00 -28.06 264.81 -7.58 -35.63 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -3.27 Total: 13.31 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -3.27 Total: 0.83 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: 0.41 Total: -61.74 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -0.41 Total: -6.38 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.06 -7.58 -35.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537959517.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.574 kcal (2) G-P(sol) polarization free energy of solvation -28.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds