Wall clock time and date at job start Mon Mar 30 2020 07:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31532 * 1 3 3 Si 1.86794 * 120.00273 * 2 1 4 4 H 1.48501 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47074 * 299.99911 * 3 2 1 6 6 H 1.48494 * 109.47224 * 59.99876 * 3 2 1 7 7 C 1.38853 * 119.99815 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00061 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.38526 * 120.00197 * 179.97438 * 9 7 2 11 11 C 1.39714 * 120.53550 * 0.02562 * 10 9 7 12 12 C 1.38132 * 118.32027 * 180.22802 * 11 10 9 13 13 C 1.50695 * 120.40276 * 179.74235 * 12 11 10 14 14 H 1.09005 * 110.43850 * 203.90602 * 13 12 11 15 15 C 1.54814 * 110.48580 * 81.22206 * 13 12 11 16 16 C 1.55003 * 102.08957 * 220.44496 * 15 13 12 17 17 O 1.44375 * 103.48943 * 37.02345 * 16 15 13 18 18 C 1.43740 * 106.98034 * 319.93627 * 17 16 15 19 19 N 1.32570 * 119.19344 * 359.48982 * 12 11 10 20 20 C 1.31787 * 121.02801 * 0.52023 * 19 12 11 21 21 N 1.31739 * 121.84407 * 359.73358 * 20 19 12 22 22 H 0.96994 * 119.99839 * 359.97438 * 1 2 3 23 23 H 0.97003 * 120.00004 * 359.97438 * 9 7 2 24 24 H 1.08002 * 120.83777 * 359.94612 * 11 10 9 25 25 H 1.08997 * 110.90714 * 338.64265 * 15 13 12 26 26 H 1.08994 * 110.90773 * 102.24761 * 15 13 12 27 27 H 1.09003 * 110.61597 * 278.51769 * 16 15 13 28 28 H 1.08998 * 110.74881 * 155.58825 * 16 15 13 29 29 H 1.09003 * 109.88185 * 267.10021 * 18 17 16 30 30 H 1.08993 * 110.00832 * 146.00910 * 18 17 16 31 31 H 1.08001 * 119.07950 * 179.70608 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2494 1.6176 0.0000 4 1 3.7094 1.3463 -0.0006 5 1 1.8907 2.3963 -1.2125 6 1 1.8907 2.3964 1.2124 7 6 2.0095 -1.2025 0.0005 8 1 3.0895 -1.2026 0.0001 9 7 1.3249 -2.3883 0.0005 10 6 2.0174 -3.5881 0.0005 11 6 3.4145 -3.6012 0.0011 12 6 4.0584 -4.8233 -0.0038 13 6 5.5637 -4.8922 -0.0093 14 1 5.8998 -5.8415 -0.4264 15 6 6.1202 -4.6989 1.4224 16 6 7.3559 -3.7974 1.1715 17 8 6.9213 -2.9174 0.1127 18 6 6.1547 -3.7132 -0.8066 19 7 3.3359 -5.9348 0.0015 20 6 2.0188 -5.8889 0.0011 21 7 1.3631 -4.7463 0.0006 22 1 -0.4849 0.8400 0.0004 23 1 0.3548 -2.3883 0.0005 24 1 3.9768 -2.6791 0.0006 25 1 5.3926 -4.1936 2.0576 26 1 6.4169 -5.6536 1.8566 27 1 8.2080 -4.3955 0.8482 28 1 7.6060 -3.2273 2.0661 29 1 6.8011 -4.0893 -1.5997 30 1 5.3504 -3.1160 -1.2360 31 1 1.4614 -6.8139 0.0007 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001537959517.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:54 Heat of formation + Delta-G solvation = -18.684528 kcal Electronic energy + Delta-G solvation = -16338.655903 eV Core-core repulsion = 13619.132947 eV Total energy + Delta-G solvation = -2719.522955 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.69448 -40.04551 -37.60595 -35.04318 -34.07004 -32.16981 -31.18787 -29.54458 -27.16160 -25.37077 -23.81164 -23.33024 -21.60389 -20.10844 -18.61611 -18.09537 -17.03301 -16.78975 -16.37757 -16.01244 -15.77608 -15.60265 -15.43815 -15.09177 -14.29796 -13.70596 -13.55702 -13.45873 -12.95545 -12.64471 -12.52814 -12.34612 -12.24663 -12.10066 -11.81444 -11.16826 -11.09400 -10.76015 -10.34065 -9.83707 -9.25457 -8.62668 -5.96257 0.44825 0.66979 1.40099 1.45698 1.54902 2.17504 2.83466 2.92710 3.04422 3.23601 3.33186 3.74324 3.80573 3.99107 4.18964 4.25860 4.38265 4.40455 4.66097 4.76523 4.81381 4.86246 4.93816 5.00607 5.06408 5.20734 5.26252 5.61363 5.93573 5.96786 6.33193 6.70883 7.23075 7.32376 7.78898 8.55218 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.021030 B = 0.008893 C = 0.006529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.124241 B = 3147.767692 C = 4287.319761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.016 4.016 3 Si 1.003 2.997 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.326 4.326 8 H 0.109 0.891 9 N -0.535 5.535 10 C 0.364 3.636 11 C -0.314 4.314 12 C 0.200 3.800 13 C -0.065 4.065 14 H 0.118 0.882 15 C -0.136 4.136 16 C 0.047 3.953 17 O -0.401 6.401 18 C 0.051 3.949 19 N -0.607 5.607 20 C 0.328 3.672 21 N -0.631 5.631 22 H 0.281 0.719 23 H 0.395 0.605 24 H 0.127 0.873 25 H 0.055 0.945 26 H 0.108 0.892 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.297 -6.392 1.026 13.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.218 4.218 3 Si 0.825 3.175 4 H -0.180 1.180 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.456 4.456 8 H 0.126 0.874 9 N -0.143 5.143 10 C 0.117 3.883 11 C -0.345 4.345 12 C 0.061 3.939 13 C -0.084 4.084 14 H 0.136 0.864 15 C -0.174 4.174 16 C -0.029 4.029 17 O -0.320 6.320 18 C -0.026 4.026 19 N -0.332 5.332 20 C 0.037 3.963 21 N -0.361 5.361 22 H 0.091 0.909 23 H 0.229 0.771 24 H 0.145 0.855 25 H 0.074 0.926 26 H 0.126 0.874 27 H 0.107 0.893 28 H 0.122 0.878 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 11.737 -6.501 1.004 13.455 hybrid contribution -0.520 1.408 -0.008 1.501 sum 11.217 -5.093 0.996 12.359 Atomic orbital electron populations 1.69787 1.07569 1.29900 1.48139 1.26310 0.96539 1.03194 0.95765 0.84710 0.78616 0.75976 0.78227 1.18016 1.19803 1.19824 1.20079 0.93444 0.82497 1.49544 0.87374 1.40846 1.08346 1.01789 1.63305 1.18805 0.89664 0.86373 0.93477 1.21646 0.93433 1.00139 1.19324 1.21200 0.96280 0.87646 0.88819 1.21464 0.87880 1.01152 0.97952 0.86392 1.23141 0.97608 1.02057 0.94619 1.23781 0.96019 0.92121 0.90991 1.88858 1.70974 1.34793 1.37418 1.23359 0.95112 0.91580 0.92533 1.68160 1.08098 1.30971 1.25991 1.24920 0.87934 0.95072 0.88402 1.67847 1.42263 0.98411 1.27535 0.90903 0.77082 0.85547 0.92603 0.87394 0.89339 0.87787 0.89528 0.91051 0.76957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.59 13.05 21.65 0.28 -49.31 16 2 C -0.02 -0.84 5.50 84.88 0.47 -0.37 16 3 Si 1.00 40.33 29.55 68.60 2.03 42.36 16 4 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 5 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 6 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 7 C -0.33 -17.10 9.56 84.04 0.80 -16.30 16 8 H 0.11 5.50 5.73 -2.91 -0.02 5.48 16 9 N -0.54 -28.21 5.43 -188.65 -1.02 -29.23 16 10 C 0.36 17.79 7.68 133.18 1.02 18.82 16 11 C -0.31 -13.80 8.05 22.60 0.18 -13.62 16 12 C 0.20 7.51 5.75 42.42 0.24 7.75 16 13 C -0.07 -1.84 3.46 -10.55 -0.04 -1.88 16 14 H 0.12 2.86 8.14 -2.38 -0.02 2.84 16 15 C -0.14 -3.32 6.70 31.90 0.21 -3.10 16 16 C 0.05 1.00 7.72 72.67 0.56 1.57 16 17 O -0.40 -11.93 11.52 -148.98 -1.72 -13.64 16 18 C 0.05 1.45 6.88 72.36 0.50 1.95 16 19 N -0.61 -22.91 10.37 -188.33 -1.95 -24.87 16 20 C 0.33 12.55 12.28 180.90 2.22 14.77 16 21 N -0.63 -28.77 10.47 -197.54 -2.07 -30.84 16 22 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 23 H 0.39 21.76 8.02 -92.71 -0.74 21.02 16 24 H 0.13 5.68 4.80 -2.91 -0.01 5.66 16 25 H 0.06 1.65 7.86 -2.39 -0.02 1.63 16 26 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.09 1.96 8.14 -2.39 -0.02 1.95 16 30 H 0.07 2.38 6.03 -2.39 -0.01 2.36 16 31 H 0.21 6.19 8.06 -2.91 -0.02 6.17 16 Total: -1.00 -61.43 264.81 2.15 -59.28 By element: Atomic # 1 Polarization: 36.23 SS G_CDS: 0.42 Total: 36.66 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 6.18 Total: 9.59 kcal Atomic # 7 Polarization: -129.48 SS G_CDS: -4.76 Total: -134.25 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -1.72 Total: -13.64 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Total: -61.43 2.15 -59.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537959517.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.599 kcal (2) G-P(sol) polarization free energy of solvation -61.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds