Wall clock time and date at job start Mon Mar 30 2020 07:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31538 * 1 3 3 Si 1.86798 * 120.00032 * 2 1 4 4 H 1.48502 * 109.47152 * 269.99956 * 3 2 1 5 5 H 1.48503 * 109.47362 * 30.00050 * 3 2 1 6 6 H 1.48503 * 109.47097 * 149.99727 * 3 2 1 7 7 C 1.38852 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99828 * 0.02562 * 7 2 1 9 9 N 1.36916 * 119.99838 * 179.97438 * 7 2 1 10 10 C 1.38570 * 119.99856 * 180.02562 * 9 7 2 11 11 C 1.39368 * 120.49183 * 359.97438 * 10 9 7 12 12 C 1.39403 * 118.21540 * 179.97438 * 11 10 9 13 13 C 1.48181 * 120.51637 * 179.97438 * 12 11 10 14 14 C 1.46800 * 127.13136 * 185.26259 * 13 12 11 15 15 C 1.34314 * 106.00150 * 180.15601 * 14 13 12 16 16 O 1.34181 * 109.02082 * 359.60423 * 15 14 13 17 17 C 1.33947 * 110.79614 * 0.26294 * 16 15 14 18 18 N 1.33435 * 118.96645 * 0.26168 * 12 11 10 19 19 C 1.31676 * 120.87324 * 359.47728 * 18 12 11 20 20 N 1.31749 * 121.98317 * 0.53876 * 19 18 12 21 21 H 0.97003 * 119.99691 * 0.02562 * 1 2 3 22 22 H 0.96998 * 120.00730 * 0.02562 * 9 7 2 23 23 H 1.08004 * 120.88831 * 0.02562 * 11 10 9 24 24 H 1.07995 * 126.99748 * 0.04974 * 14 13 12 25 25 H 1.08002 * 125.49093 * 179.87361 * 15 14 13 26 26 H 1.07994 * 125.77427 * 179.97438 * 17 16 15 27 27 H 1.08001 * 119.00887 * 180.24391 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 2.4969 2.0464 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5469 1.4401 0.7001 7 6 2.0096 -1.2025 0.0005 8 1 1.4696 -2.1378 0.0005 9 7 3.3788 -1.2025 0.0000 10 6 4.0716 -2.4025 0.0000 11 6 3.3852 -3.6154 0.0011 12 6 4.1296 -4.7940 0.0005 13 6 3.4521 -6.1119 0.0021 14 6 4.0836 -7.4328 0.1091 15 6 3.0822 -8.3268 0.0632 16 8 1.9166 -7.6722 -0.0517 17 6 2.1164 -6.3482 -0.0897 18 7 5.4617 -4.7170 0.0042 19 6 6.0711 -3.5497 -0.0018 20 7 5.4033 -2.4140 -0.0013 21 1 -0.4850 0.8401 -0.0004 22 1 3.8639 -0.3625 -0.0004 23 1 2.3055 -3.6414 0.0015 24 1 5.1387 -7.6430 0.2036 25 1 3.1964 -9.3995 0.1151 26 1 1.3467 -5.5959 -0.1789 27 1 7.1507 -3.5225 -0.0026 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001537959776.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:34 Heat of formation + Delta-G solvation = 67.424647 kcal Electronic energy + Delta-G solvation = -14886.126104 eV Core-core repulsion = 12224.960080 eV Total energy + Delta-G solvation = -2661.166024 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.075 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.11401 -39.70006 -35.97781 -33.65269 -32.46623 -31.14204 -30.18779 -28.64789 -25.15651 -23.94945 -22.34330 -20.87354 -20.21100 -18.62302 -17.86028 -16.50686 -15.73744 -15.70644 -14.98789 -14.56590 -14.13431 -13.93677 -13.87175 -13.15219 -12.60577 -12.41295 -12.29110 -11.96968 -11.84171 -11.05216 -10.82509 -10.35504 -10.18531 -9.60023 -9.22649 -8.89110 -8.26788 -8.14157 -7.59875 -6.69383 -4.05511 1.49233 2.16810 2.27067 2.95264 2.97863 3.01826 3.19360 3.27573 3.85657 4.32476 4.65970 4.72063 4.88941 5.11580 5.26767 5.42668 5.64162 5.83466 6.11536 6.21331 6.28134 6.44426 6.60118 6.66876 7.19301 7.30421 7.36043 7.68210 8.03071 8.34684 8.91816 8.98704 9.38073 10.40256 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.032741 B = 0.006963 C = 0.005755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.000867 B = 4020.480414 C = 4864.350473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.050 3.950 3 Si 0.883 3.117 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.263 1.263 7 C -0.311 4.311 8 H 0.122 0.878 9 N -0.544 5.544 10 C 0.388 3.612 11 C -0.284 4.284 12 C 0.251 3.749 13 C -0.136 4.136 14 C -0.176 4.176 15 C -0.057 4.057 16 O -0.183 6.183 17 C -0.004 4.004 18 N -0.600 5.600 19 C 0.334 3.666 20 N -0.614 5.614 21 H 0.281 0.719 22 H 0.385 0.615 23 H 0.134 0.866 24 H 0.154 0.846 25 H 0.201 0.799 26 H 0.211 0.789 27 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.561 -9.000 -0.002 10.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.158 4.158 3 Si 0.708 3.292 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.188 1.188 7 C -0.441 4.441 8 H 0.139 0.861 9 N -0.154 5.154 10 C 0.141 3.859 11 C -0.315 4.315 12 C 0.114 3.886 13 C -0.138 4.138 14 C -0.195 4.195 15 C -0.123 4.123 16 O -0.079 6.079 17 C -0.074 4.074 18 N -0.326 5.326 19 C 0.042 3.958 20 N -0.344 5.344 21 H 0.091 0.909 22 H 0.221 0.779 23 H 0.152 0.848 24 H 0.172 0.828 25 H 0.217 0.783 26 H 0.227 0.773 27 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 4.693 -8.864 -0.010 10.030 hybrid contribution -0.166 1.404 0.031 1.414 sum 4.527 -7.460 0.021 8.726 Atomic orbital electron populations 1.69648 1.05656 1.28595 1.45784 1.25021 0.95624 0.98626 0.96507 0.86561 0.80085 0.82981 0.79548 1.19075 1.19652 1.18846 1.19432 0.78568 0.96948 1.49155 0.86086 1.41018 1.06164 1.03742 1.64481 1.18064 0.87649 0.86602 0.93590 1.21728 1.01350 0.91552 1.16834 1.18706 0.89240 0.89639 0.90975 1.19983 0.92281 0.92357 1.09196 1.22848 1.00368 0.90742 1.05570 1.23831 0.82415 0.98158 1.07913 1.83837 1.33885 1.18558 1.71612 1.24265 0.97321 0.82353 1.03455 1.68227 1.09299 1.29176 1.25907 1.24055 0.99488 0.82311 0.89957 1.67745 1.07209 1.32365 1.27086 0.90856 0.77906 0.84793 0.82831 0.78257 0.77285 0.80565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.77 13.96 55.49 0.77 -21.99 15 2 C 0.05 1.25 5.50 -17.45 -0.10 1.15 15 3 Si 0.88 18.73 27.73 -169.99 -4.71 14.01 15 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 15 5 H -0.27 -5.70 7.11 56.52 0.40 -5.30 15 6 H -0.26 -5.41 6.52 56.52 0.37 -5.04 15 7 C -0.31 -7.85 10.04 -15.05 -0.15 -8.00 15 8 H 0.12 3.16 5.96 -52.48 -0.31 2.85 15 9 N -0.54 -12.83 5.23 -11.03 -0.06 -12.89 15 10 C 0.39 8.94 7.67 -154.69 -1.19 7.75 15 11 C -0.28 -6.16 8.92 -38.73 -0.35 -6.50 15 12 C 0.25 5.11 6.79 -82.65 -0.56 4.55 15 13 C -0.14 -2.38 6.29 -103.17 -0.65 -3.03 15 14 C -0.18 -2.61 11.02 -37.51 -0.41 -3.02 15 15 C -0.06 -0.71 12.04 29.35 0.35 -0.35 15 16 O -0.18 -2.59 10.54 6.98 0.07 -2.52 15 17 C 0.00 -0.07 11.56 29.91 0.35 0.28 15 18 N -0.60 -12.10 10.29 -11.19 -0.12 -12.21 15 19 C 0.33 6.48 12.28 -92.29 -1.13 5.34 15 20 N -0.61 -13.36 10.46 -13.86 -0.14 -13.51 15 21 H 0.28 6.89 8.31 -40.82 -0.34 6.55 15 22 H 0.39 8.72 5.88 -40.82 -0.24 8.48 15 23 H 0.13 2.83 5.23 -52.48 -0.27 2.55 15 24 H 0.15 2.12 8.06 -52.49 -0.42 1.70 15 25 H 0.20 1.56 8.06 -52.49 -0.42 1.14 15 26 H 0.21 2.82 7.42 -52.49 -0.39 2.43 15 27 H 0.18 2.68 8.06 -52.49 -0.42 2.26 15 LS Contribution 248.05 15.07 3.74 3.74 Total: -1.00 -28.85 248.05 -5.94 -34.78 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -1.65 Total: 12.42 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -3.84 Total: -1.84 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: 0.46 Total: -60.60 kcal Atomic # 8 Polarization: -2.59 SS G_CDS: 0.07 Total: -2.52 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -4.71 Total: 14.01 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -28.85 -5.94 -34.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537959776.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.208 kcal (2) G-P(sol) polarization free energy of solvation -28.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds