Wall clock time and date at job start Mon Mar 30 2020 07:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31538 * 1 3 3 Si 1.86798 * 120.00032 * 2 1 4 4 H 1.48502 * 109.47152 * 269.99956 * 3 2 1 5 5 H 1.48503 * 109.47362 * 30.00050 * 3 2 1 6 6 H 1.48503 * 109.47097 * 149.99727 * 3 2 1 7 7 C 1.38852 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99828 * 0.02562 * 7 2 1 9 9 N 1.36916 * 119.99838 * 179.97438 * 7 2 1 10 10 C 1.38570 * 119.99856 * 180.02562 * 9 7 2 11 11 C 1.39368 * 120.49183 * 359.97438 * 10 9 7 12 12 C 1.39403 * 118.21540 * 179.97438 * 11 10 9 13 13 C 1.48181 * 120.51637 * 179.97438 * 12 11 10 14 14 C 1.46800 * 127.13136 * 185.26259 * 13 12 11 15 15 C 1.34314 * 106.00150 * 180.15601 * 14 13 12 16 16 O 1.34181 * 109.02082 * 359.60423 * 15 14 13 17 17 C 1.33947 * 110.79614 * 0.26294 * 16 15 14 18 18 N 1.33435 * 118.96645 * 0.26168 * 12 11 10 19 19 C 1.31676 * 120.87324 * 359.47728 * 18 12 11 20 20 N 1.31749 * 121.98317 * 0.53876 * 19 18 12 21 21 H 0.97003 * 119.99691 * 0.02562 * 1 2 3 22 22 H 0.96998 * 120.00730 * 0.02562 * 9 7 2 23 23 H 1.08004 * 120.88831 * 0.02562 * 11 10 9 24 24 H 1.07995 * 126.99748 * 0.04974 * 14 13 12 25 25 H 1.08002 * 125.49093 * 179.87361 * 15 14 13 26 26 H 1.07994 * 125.77427 * 179.97438 * 17 16 15 27 27 H 1.08001 * 119.00887 * 180.24391 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 2.4969 2.0464 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5469 1.4401 0.7001 7 6 2.0096 -1.2025 0.0005 8 1 1.4696 -2.1378 0.0005 9 7 3.3788 -1.2025 0.0000 10 6 4.0716 -2.4025 0.0000 11 6 3.3852 -3.6154 0.0011 12 6 4.1296 -4.7940 0.0005 13 6 3.4521 -6.1119 0.0021 14 6 4.0836 -7.4328 0.1091 15 6 3.0822 -8.3268 0.0632 16 8 1.9166 -7.6722 -0.0517 17 6 2.1164 -6.3482 -0.0897 18 7 5.4617 -4.7170 0.0042 19 6 6.0711 -3.5497 -0.0018 20 7 5.4033 -2.4140 -0.0013 21 1 -0.4850 0.8401 -0.0004 22 1 3.8639 -0.3625 -0.0004 23 1 2.3055 -3.6414 0.0015 24 1 5.1387 -7.6430 0.2036 25 1 3.1964 -9.3995 0.1151 26 1 1.3467 -5.5959 -0.1789 27 1 7.1507 -3.5225 -0.0026 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001537959776.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:34 Heat of formation + Delta-G solvation = 49.890787 kcal Electronic energy + Delta-G solvation = -14886.886430 eV Core-core repulsion = 12224.960080 eV Total energy + Delta-G solvation = -2661.926350 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.075 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.28230 -41.37107 -37.73882 -35.14252 -34.24420 -32.57569 -31.73579 -30.00022 -26.98236 -25.51181 -23.92715 -22.08965 -21.61301 -20.39767 -19.21445 -18.13898 -17.32403 -16.88463 -16.48912 -16.23809 -15.62968 -15.61508 -15.30444 -14.90852 -14.17612 -13.81021 -13.66763 -13.58874 -13.16008 -12.70491 -12.56674 -12.09270 -11.72277 -11.31331 -10.99484 -10.16958 -9.94660 -9.54808 -9.28443 -8.56849 -5.99726 -0.01654 0.54407 1.07542 1.27935 1.31169 1.35150 1.80905 2.10769 2.17586 2.59723 2.85136 3.30839 3.38280 3.62148 3.94471 4.12868 4.24638 4.49627 4.63975 4.80402 4.86558 5.06608 5.19208 5.39400 5.51704 5.60372 5.87610 6.17258 6.31914 6.49642 7.11670 7.16802 7.66695 8.56163 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.032741 B = 0.006963 C = 0.005755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.000867 B = 4020.480414 C = 4864.350473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.004 3.996 3 Si 0.945 3.055 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.253 1.253 7 C -0.320 4.320 8 H 0.098 0.902 9 N -0.557 5.557 10 C 0.384 3.616 11 C -0.308 4.308 12 C 0.258 3.742 13 C -0.176 4.176 14 C -0.198 4.198 15 C -0.030 4.030 16 O -0.182 6.182 17 C 0.005 3.995 18 N -0.599 5.599 19 C 0.334 3.666 20 N -0.625 5.625 21 H 0.284 0.716 22 H 0.388 0.612 23 H 0.130 0.870 24 H 0.162 0.838 25 H 0.251 0.749 26 H 0.219 0.781 27 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.071 -10.433 0.032 12.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.199 4.199 3 Si 0.767 3.233 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.178 1.178 7 C -0.450 4.450 8 H 0.116 0.884 9 N -0.171 5.171 10 C 0.138 3.862 11 C -0.339 4.339 12 C 0.120 3.880 13 C -0.179 4.179 14 C -0.217 4.217 15 C -0.095 4.095 16 O -0.077 6.077 17 C -0.065 4.065 18 N -0.323 5.323 19 C 0.043 3.957 20 N -0.355 5.355 21 H 0.094 0.906 22 H 0.224 0.776 23 H 0.148 0.852 24 H 0.179 0.821 25 H 0.267 0.733 26 H 0.235 0.765 27 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 6.238 -10.333 0.025 12.070 hybrid contribution -0.509 1.512 0.018 1.595 sum 5.729 -8.822 0.043 10.519 Atomic orbital electron populations 1.69746 1.07107 1.29569 1.48002 1.25711 0.96293 1.01735 0.96153 0.85607 0.79160 0.78747 0.79775 1.18530 1.19171 1.17790 1.19294 0.79430 0.96469 1.49831 0.88428 1.40844 1.05423 1.04056 1.66756 1.18423 0.88471 0.86851 0.92473 1.21829 1.01483 0.91992 1.18562 1.19124 0.89388 0.90567 0.88882 1.20130 0.93467 0.92328 1.11967 1.23003 1.01472 0.89856 1.07354 1.24722 0.80753 0.99778 1.04262 1.83884 1.34842 1.17914 1.71098 1.24450 0.96934 0.83194 1.01967 1.68363 1.09179 1.29491 1.25309 1.24995 1.01291 0.81448 0.88002 1.67839 1.06530 1.33503 1.27589 0.90612 0.77553 0.85219 0.82060 0.73310 0.76456 0.76204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.45 13.96 21.65 0.30 -49.14 15 2 C 0.00 0.21 5.50 84.88 0.47 0.67 15 3 Si 0.94 38.85 27.73 68.60 1.90 40.76 15 4 H -0.26 -10.42 7.11 99.48 0.71 -9.71 15 5 H -0.27 -10.67 7.11 99.48 0.71 -9.97 15 6 H -0.25 -9.88 6.52 99.48 0.65 -9.23 15 7 C -0.32 -16.73 10.04 84.05 0.84 -15.88 15 8 H 0.10 5.40 5.96 -2.91 -0.02 5.39 15 9 N -0.56 -26.67 5.23 -188.80 -0.99 -27.66 15 10 C 0.38 17.78 7.67 133.03 1.02 18.80 15 11 C -0.31 -13.61 8.92 22.82 0.20 -13.40 15 12 C 0.26 10.39 6.79 41.82 0.28 10.67 15 13 C -0.18 -6.00 6.29 -18.92 -0.12 -6.12 15 14 C -0.20 -5.38 11.02 23.61 0.26 -5.12 15 15 C -0.03 -0.63 12.04 66.92 0.81 0.18 15 16 O -0.18 -4.67 10.54 2.08 0.02 -4.65 15 17 C 0.00 0.14 11.56 67.29 0.78 0.92 15 18 N -0.60 -23.18 10.29 -189.31 -1.95 -25.13 15 19 C 0.33 12.24 12.28 180.93 2.22 14.46 15 20 N -0.62 -26.52 10.46 -197.75 -2.07 -28.59 15 21 H 0.28 14.32 8.31 -92.71 -0.77 13.55 15 22 H 0.39 17.53 5.88 -92.71 -0.54 16.99 15 23 H 0.13 5.74 5.23 -2.91 -0.02 5.73 15 24 H 0.16 4.05 8.06 -2.91 -0.02 4.02 15 25 H 0.25 2.49 8.06 -2.91 -0.02 2.47 15 26 H 0.22 5.88 7.42 -2.91 -0.02 5.85 15 27 H 0.22 5.90 8.06 -2.91 -0.02 5.88 15 Total: -1.00 -62.88 248.05 4.61 -58.27 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: 0.62 Total: 30.97 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 6.76 Total: 5.18 kcal Atomic # 7 Polarization: -125.82 SS G_CDS: -4.70 Total: -130.52 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: 0.02 Total: -4.65 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 1.90 Total: 40.76 kcal Total: -62.88 4.61 -58.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537959776.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.158 kcal (2) G-P(sol) polarization free energy of solvation -62.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds